{"id":"https://openalex.org/W2911267413","doi":"https://doi.org/10.1002/0471142727.mb2112s75","title":"Paired\u2010End diTagging for Transcriptome and Genome Analysis","display_name":"Paired\u2010End diTagging for Transcriptome and Genome Analysis","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2911267413","doi":"https://doi.org/10.1002/0471142727.mb2112s75","mag":"2911267413"},"language":"en","primary_location":{"id":"doi:10.1002/0471142727.mb2112s75","doi":"https://doi.org/10.1002/0471142727.mb2112s75","is_oa":false,"landing_page_url":"https://doi.org/10.1002/0471142727.mb2112s75","pdf_url":null,"source":{"id":"https://openalex.org/S2755386604","display_name":"Current Protocols in Molecular Biology","issn_l":"1934-3639","issn":["1934-3639","1934-3647"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","ki-jl-1","poland-100"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Current Protocols in Molecular Biology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108501408","display_name":"Patrick Ng","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Patrick Ng","raw_affiliation_strings":["Cloning and Sequencing Group, Genome Institute of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cloning and Sequencing Group, Genome Institute of Singapore, Singapore","institution_ids":["https://openalex.org/I66068411"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025894522","display_name":"Chia\u2010Lin Wei","orcid":"https://orcid.org/0000-0001-6820-0461","observed_orcids":["https://orcid.org/0000-0001-6820-0461"]},"institutions":[{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Chia\u2010Lin Wei","raw_affiliation_strings":["Cloning and Sequencing Group, Genome Institute of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cloning and Sequencing Group, Genome Institute of Singapore, Singapore","institution_ids":["https://openalex.org/I66068411"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028790437","display_name":"Yijun Ruan","orcid":"https://orcid.org/0000-0001-5881-569X","observed_orcids":["https://orcid.org/0000-0001-5881-569X"]},"institutions":[{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yijun Ruan","raw_affiliation_strings":["Cloning and Sequencing Group, Genome Institute of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cloning and Sequencing Group, Genome Institute of Singapore, Singapore","institution_ids":["https://openalex.org/I66068411"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I66068411"],"apc_list":{"value":5050,"currency":"USD","value_usd":5050},"apc_paid":null,"fwci":0.4076,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.60032056,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"75","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/self-ligation","display_name":"self-ligation","score":0.5870000123977661},{"id":"https://openalex.org/keywords/sequence-labeling","display_name":"sequence labeling","score":0.3109999895095825},{"id":"https://openalex.org/keywords/whole-transcriptome-analysis","display_name":"whole transcriptome analysis","score":0.8320000171661377},{"id":"https://openalex.org/keywords/full-length-cdna","display_name":"full-length cDNA","score":0.8130000233650208},{"id":"https://openalex.org/keywords/gene-discovery","display_name":"gene discovery","score":0.9179999828338623},{"id":"https://openalex.org/keywords/gene-expression","display_name":"gene expression","score":0.7549999952316284},{"id":"https://openalex.org/keywords/chromatin-immunoprecipitation","display_name":"chromatin immunoprecipitation","score":0.9710000157356262},{"id":"https://openalex.org/keywords/transcription-factor-binding-sites","display_name":"transcription factor binding sites","score":0.925000011920929},{"id":"https://openalex.org/keywords/genome-mapping","display_name":"genome mapping","score":0.6060000061988831}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5704575181007385},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5367547273635864},{"id":"https://openalex.org/C17757408","wikidata":"https://www.wikidata.org/wiki/Q4135516","display_name":"genomic DNA","level":3,"score":0.49915361404418945},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4932796359062195},{"id":"https://openalex.org/C187882448","wikidata":"https://www.wikidata.org/wiki/Q283478","display_name":"Complementary DNA","level":3,"score":0.48879143595695496},{"id":"https://openalex.org/C2780098074","wikidata":"https://www.wikidata.org/wiki/Q6037362","display_name":"Insert (composites)","level":2,"score":0.4805889129638672},{"id":"https://openalex.org/C134320426","wikidata":"https://www.wikidata.org/wiki/Q901026","display_name":"Chromatin immunoprecipitation","level":5,"score":0.4770507216453552},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.47134822607040405},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4678018391132355},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4599103331565857},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4484906792640686},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.42532968521118164},{"id":"https://openalex.org/C13575015","wikidata":"https://www.wikidata.org/wiki/Q1562492","display_name":"Genomic library","level":4,"score":0.42347875237464905},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.3285585045814514},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3197973370552063},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.23703482747077942},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.09174588322639465},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1002/0471142727.mb2112s75","doi":"https://doi.org/10.1002/0471142727.mb2112s75","is_oa":false,"landing_page_url":"https://doi.org/10.1002/0471142727.mb2112s75","pdf_url":null,"source":{"id":"https://openalex.org/S2755386604","display_name":"Current Protocols in Molecular Biology","issn_l":"1934-3639","issn":["1934-3639","1934-3647"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","ki-jl-1","poland-100"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Current Protocols in Molecular Biology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1501973340","https://openalex.org/W1971062749","https://openalex.org/W1980303046","https://openalex.org/W2002982210","https://openalex.org/W2010888033","https://openalex.org/W2030817277","https://openalex.org/W2032109237","https://openalex.org/W2050163545","https://openalex.org/W2053833990","https://openalex.org/W2069047984","https://openalex.org/W2094448442","https://openalex.org/W2101706357","https://openalex.org/W2107575419","https://openalex.org/W2110015307","https://openalex.org/W2114703458","https://openalex.org/W2118628540","https://openalex.org/W2124386744","https://openalex.org/W2131828032","https://openalex.org/W2141171810","https://openalex.org/W2151587693","https://openalex.org/W2160003307","https://openalex.org/W2171407623","https://openalex.org/W4213387068","https://openalex.org/W4248318091"],"related_works":["https://openalex.org/W2500804099","https://openalex.org/W4256518918","https://openalex.org/W4211051564","https://openalex.org/W2312979967","https://openalex.org/W1974008944","https://openalex.org/W2151587693","https://openalex.org/W2132012257","https://openalex.org/W4254891182","https://openalex.org/W2122056961","https://openalex.org/W34301748"],"abstract_inverted_index":{"Abstract":[0],"The":[1],"Paired\u2010End":[2],"diTagging":[3],"(PET)":[4],"procedure":[5],"enables":[6,108,131],"one":[7],"to":[8,74,105],"obtain":[9],"sequence":[10],"information":[11],"from":[12,81],"both":[13],"termini":[14],"of":[15,26,41,54,96,102,125,135],"any":[16],"contiguous":[17],"DNA":[18,36,79,129],"fragment.":[19],"This":[20,91],"is":[21],"achieved":[22],"by":[23],"a":[24,42],"series":[25],"enzymatic":[27],"manipulations":[28],"that":[29,59],"introduce":[30],"MmeI":[31,46],"sites":[32],"directly":[33],"flanking":[34],"each":[35],"insert":[37],"during":[38],"the":[39,52,71,77,83,132],"construction":[40],"plasmid":[43],"library.":[44],"Subsequent":[45],"digestion":[47],"and":[48,63,118],"self\u2010ligation":[49],"results":[50],"in":[51],"production":[53],"covalently\u2010linked":[55],"paired\u2010end":[56],"ditags":[57],"(PETs)":[58],"can":[60,87],"be":[61,88],"extracted":[62],"then":[64],"concatenated":[65],"for":[66],"efficient":[67],"sequencing.":[68],"By":[69],"mapping":[70,134],"PET":[72,97],"sequences":[73],"assembled":[75],"genomes,":[76],"original":[78],"fragments":[80,130],"which":[82],"PETs":[84],"were":[85],"derived":[86],"precisely":[89],"localized.":[90],"unit":[92],"details":[93],"two":[94],"applications":[95],"technology.":[98],"In":[99,122],"GIS\u2010PET,":[100],"ditagging":[101,124],"mRNA":[103],"converted":[104],"full\u2010length":[106],"cDNA":[107],"whole\u2010transcriptome":[109],"analysis,":[110],"including":[111],"novel":[112],"gene":[113,115,119],"identification,":[114],"prediction":[116],"validation,":[117],"expression":[120],"studies.":[121],"ChIP\u2010PET,":[123],"chromatin":[126],"immunoprecipitation\u2013enriched":[127],"genomic":[128],"global":[133],"transcription":[136],"factor":[137],"binding":[138],"sites.":[139]},"counts_by_year":[],"updated_date":"2026-10-30T12:39:25.321706","created_date":"2019-02-21T00:00:00"}
