{"id":"https://openalex.org/W2902625972","doi":"https://doi.org/10.1093/bioinformatics/bty968","title":"BlendMol: advanced macromolecular visualization in Blender","display_name":"BlendMol: advanced macromolecular visualization in Blender","publication_year":2018,"publication_date":"2018-11-26","ids":{"openalex":"https://openalex.org/W2902625972","doi":"https://doi.org/10.1093/bioinformatics/bty968","mag":"2902625972","pmid":"https://pubmed.ncbi.nlm.nih.gov/30481283","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6596883"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty968","doi":"https://doi.org/10.1093/bioinformatics/bty968","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty968","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/13/2323/28878358/bty968.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/13/2323/28878358/bty968.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084976210","display_name":"Jacob D. Durrant","orcid":"https://orcid.org/0000-0002-5808-4097","observed_orcids":["https://orcid.org/0000-0002-5808-4097"]},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jacob D Durrant","raw_affiliation_strings":["Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA"],"raw_orcid":"https://orcid.org/0000-0002-5808-4097","affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5084976210"],"corresponding_institution_ids":["https://openalex.org/I170201317"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":10.168,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.97982994,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"35","issue":"13","first_page":"2323","last_page":"2325"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10481","display_name":"Computer Graphics and Visualization Techniques","score":0.6704000234603882,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10481","display_name":"Computer Graphics and Visualization Techniques","score":0.6704000234603882,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.16300000250339508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.13529999554157257,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/blender","display_name":"Blender","score":0.8799999952316284},{"id":"https://openalex.org/keywords/molecular-visualization-software","display_name":"molecular visualization software","score":0.5130000114440918},{"id":"https://openalex.org/keywords/open-source-software","display_name":"open source software","score":0.5080000162124634}],"concepts":[{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.8353946208953857},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8266549706459045},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7983781695365906},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7266347408294678},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.6909345388412476},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.6687623858451843},{"id":"https://openalex.org/C2781400479","wikidata":"https://www.wikidata.org/wiki/Q11640","display_name":"Outreach","level":2,"score":0.5456089377403259},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4761412441730499},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.46091228723526},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4455205798149109},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3333020806312561},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3215782046318054},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21193304657936096},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1529155969619751},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty968","doi":"https://doi.org/10.1093/bioinformatics/bty968","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty968","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/13/2323/28878358/bty968.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6596883","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6596883","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmid:30481283","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30481283","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty968","doi":"https://doi.org/10.1093/bioinformatics/bty968","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty968","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/13/2323/28878358/bty968.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[{"display_name":"Industry, innovation and infrastructure","score":0.5899999737739563,"id":"https://metadata.un.org/sdg/9"}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310174","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305"},{"id":"https://openalex.org/F4320332162","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2902625972.pdf","grobid_xml":"https://content.openalex.org/works/W2902625972.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1992412606","https://openalex.org/W2011703027","https://openalex.org/W2029667189","https://openalex.org/W2052150953","https://openalex.org/W2069152576","https://openalex.org/W2140047797","https://openalex.org/W2147085530","https://openalex.org/W2346539852","https://openalex.org/W2620969365","https://openalex.org/W2776406038"],"related_works":["https://openalex.org/W2776406038","https://openalex.org/W4396799639","https://openalex.org/W3037355686","https://openalex.org/W3159719254","https://openalex.org/W4411257382","https://openalex.org/W2771627141","https://openalex.org/W7136077353","https://openalex.org/W6921113098","https://openalex.org/W4293094227","https://openalex.org/W2140047797"],"abstract_inverted_index":{"SUMMARY:":[0],"Programs":[1],"such":[2],"as":[3],"VMD":[4,64],"and":[5,29,82],"PyMOL":[6,66],"are":[7,72,104],"excellent":[8],"tools":[9],"for":[10,42,52,75],"analyzing":[11],"macromolecular":[12],"structures,":[13],"but":[14,45],"they":[15],"do":[16],"not":[17],"implement":[18],"many":[19],"of":[20,91],"the":[21,27,34],"advanced":[22],"rendering":[23],"techniques":[24],"common":[25],"in":[26,77,98],"film":[28],"video-game":[30],"industries.":[31],"In":[32],"contrast,":[33],"open-source":[35],"program":[36],"Blender":[37,60],"is":[38,49,88,96],"a":[39,59],"general-purpose":[40],"tool":[41],"industry-standard":[43],"rendering/visualization,":[44],"its":[46],"user":[47],"interface":[48],"poorly":[50],"suited":[51,74],"rigorous":[53],"scientific":[54],"analysis.":[55],"We":[56],"present":[57],"BlendMol,":[58],"plugin":[61],"that":[62],"imports":[63],"or":[65],"scenes":[67],"into":[68],"Blender.":[69],"BlendMol-generated":[70],"images":[71],"well":[73],"use":[76],"manuscripts,":[78],"outreach":[79],"programs,":[80],"websites":[81],"classes.":[83],"AVAILABILITY":[84],"AND":[85],"IMPLEMENTATION:":[86],"BlendMol":[87],"available":[89,105],"free":[90],"charge":[92],"from":[93],"http://durrantlab.com/blendmol/.":[94],"It":[95],"written":[97],"Python.":[99],"SUPPLEMENTARY":[100],"INFORMATION:":[101],"Supplementary":[102],"data":[103],"at":[106],"Bioinformatics":[107],"online.":[108]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2018-12-11T00:00:00"}
