{"id":"https://openalex.org/W2884798537","doi":"https://doi.org/10.3389/fvets.2018.00176","title":"Illumina Next Generation Sequencing for the Analysis of Eimeria Populations in Commercial Broilers and Indigenous Chickens","display_name":"Illumina Next Generation Sequencing for the Analysis of Eimeria Populations in Commercial Broilers and Indigenous Chickens","publication_year":2018,"publication_date":"2018-07-30","ids":{"openalex":"https://openalex.org/W2884798537","doi":"https://doi.org/10.3389/fvets.2018.00176","mag":"2884798537","pmid":"https://pubmed.ncbi.nlm.nih.gov/30105228","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6077195"},"language":"en","primary_location":{"id":"doi:10.3389/fvets.2018.00176","doi":"https://doi.org/10.3389/fvets.2018.00176","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fvets.2018.00176","pdf_url":"https://www.frontiersin.org/articles/10.3389/fvets.2018.00176/pdf","source":{"id":"https://openalex.org/S2594976040","display_name":"Frontiers in Veterinary Science","issn_l":"2297-1769","issn":["2297-1769"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","ki-jl-1","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Veterinary Science","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fvets.2018.00176/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084774716","display_name":"Ankit Hinsu","orcid":"https://orcid.org/0000-0002-8985-4541","observed_orcids":["https://orcid.org/0000-0002-8985-4541"]},"institutions":[{"id":"https://openalex.org/I34750443","display_name":"Anand Agricultural University","ror":"https://ror.org/050qxn185","country_code":"IN","type":"education","lineage":["https://openalex.org/I34750443"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ankit T. Hinsu","raw_affiliation_strings":["Department of Animal Genetics and Breeding, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Genetics and Breeding, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India","institution_ids":["https://openalex.org/I34750443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031445095","display_name":"Jalpa R. Thakkar","orcid":"https://orcid.org/0000-0001-6979-3369","observed_orcids":["https://orcid.org/0000-0001-6979-3369"]},"institutions":[{"id":"https://openalex.org/I34750443","display_name":"Anand Agricultural University","ror":"https://ror.org/050qxn185","country_code":"IN","type":"education","lineage":["https://openalex.org/I34750443"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Jalpa R. Thakkar","raw_affiliation_strings":["Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India","institution_ids":["https://openalex.org/I34750443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019304657","display_name":"PRAKASH G. KORINGA","orcid":"https://orcid.org/0000-0002-7709-4231","observed_orcids":["https://orcid.org/0000-0002-7709-4231"]},"institutions":[{"id":"https://openalex.org/I34750443","display_name":"Anand Agricultural University","ror":"https://ror.org/050qxn185","country_code":"IN","type":"education","lineage":["https://openalex.org/I34750443"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Prakash G. Koringa","raw_affiliation_strings":["Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India","institution_ids":["https://openalex.org/I34750443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033935047","display_name":"Vladim\u00edr Vrba","orcid":"https://orcid.org/0000-0002-2682-2809","observed_orcids":["https://orcid.org/0000-0002-2682-2809"]},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Vladimir Vrba","raw_affiliation_strings":["Eimeria Pty Ltd, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Werribee, VIC, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Eimeria Pty Ltd, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Werribee, VIC, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029018421","display_name":"Subhash J. Jakhesara","orcid":"https://orcid.org/0000-0002-3246-8834","observed_orcids":["https://orcid.org/0000-0002-3246-8834"]},"institutions":[{"id":"https://openalex.org/I34750443","display_name":"Anand Agricultural University","ror":"https://ror.org/050qxn185","country_code":"IN","type":"education","lineage":["https://openalex.org/I34750443"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Subhash J. Jakhesara","raw_affiliation_strings":["Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India","institution_ids":["https://openalex.org/I34750443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079832331","display_name":"Androniki Psifidi","orcid":"https://orcid.org/0000-0003-4095-1452","observed_orcids":["https://orcid.org/0000-0003-4095-1452"]},"institutions":[{"id":"https://openalex.org/I133836048","display_name":"Royal Veterinary College","ror":"https://ror.org/01wka8n18","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I133836048"]},{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Androniki Psifidi","raw_affiliation_strings":["Department of Clinical Science and Services, Royal Veterinary College, North Mymms, Hertfordshire, United Kingdom","The Roslin Institute, University of Edinburgh, Easter Bush, Midlothian, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Science and Services, Royal Veterinary College, North Mymms, Hertfordshire, United Kingdom","institution_ids":["https://openalex.org/I133836048"]},{"raw_affiliation_string":"The Roslin Institute, University of Edinburgh, Easter Bush, Midlothian, United Kingdom","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090681633","display_name":"Javier Guiti\u00e1n","orcid":"https://orcid.org/0000-0003-0799-0476","observed_orcids":["https://orcid.org/0000-0003-0799-0476"]},"institutions":[{"id":"https://openalex.org/I133836048","display_name":"Royal Veterinary College","ror":"https://ror.org/01wka8n18","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I133836048"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Javier Guitian","raw_affiliation_strings":["Department of Pathobiology and Population Sciences, Royal Veterinary College, North Mymms, Hertfordshire, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathobiology and Population Sciences, Royal Veterinary College, North Mymms, Hertfordshire, United Kingdom","institution_ids":["https://openalex.org/I133836048"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044494740","display_name":"Fiona M. Tomley","orcid":"https://orcid.org/0000-0003-2188-8013","observed_orcids":["https://orcid.org/0000-0003-2188-8013"]},"institutions":[{"id":"https://openalex.org/I133836048","display_name":"Royal Veterinary College","ror":"https://ror.org/01wka8n18","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I133836048"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Fiona M. Tomley","raw_affiliation_strings":["Department of Pathobiology and Population Sciences, Royal Veterinary College, North Mymms, Hertfordshire, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathobiology and Population Sciences, Royal Veterinary College, North Mymms, Hertfordshire, United Kingdom","institution_ids":["https://openalex.org/I133836048"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090532601","display_name":"Dharamsibhai N. Rank","orcid":"https://orcid.org/0000-0002-7321-0127","observed_orcids":["https://orcid.org/0000-0002-7321-0127"]},"institutions":[{"id":"https://openalex.org/I34750443","display_name":"Anand Agricultural University","ror":"https://ror.org/050qxn185","country_code":"IN","type":"education","lineage":["https://openalex.org/I34750443"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Dharamsibhai N. Rank","raw_affiliation_strings":["Department of Animal Genetics and Breeding, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Genetics and Breeding, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India","institution_ids":["https://openalex.org/I34750443"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Muthusamy Raman","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210166246","display_name":"Translational Research Platform for Veterinary Biologicals (India)","ror":"https://ror.org/05nr25f03","country_code":"IN","type":"company","lineage":["https://openalex.org/I4210166246"]},{"id":"https://openalex.org/I82452031","display_name":"Tamil Nadu Veterinary and Animal Sciences University","ror":"https://ror.org/04waphv22","country_code":"IN","type":"education","lineage":["https://openalex.org/I82452031"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Muthusamy Raman","raw_affiliation_strings":["Department of Veterinary Parasitology, Madras Veterinary College, Tamil Nadu Veterinary and Animal Sciences University, Chennai, India","Translational Research Platform for Veterinary Biologicals, Tamil Nadu Veterinary and Animal Sciences University, Chennai, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Veterinary Parasitology, Madras Veterinary College, Tamil Nadu Veterinary and Animal Sciences University, Chennai, India","institution_ids":["https://openalex.org/I82452031"]},{"raw_affiliation_string":"Translational Research Platform for Veterinary Biologicals, Tamil Nadu Veterinary and Animal Sciences University, Chennai, India","institution_ids":["https://openalex.org/I4210166246","https://openalex.org/I82452031"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058215874","display_name":"Chaitanya G. Joshi","orcid":"https://orcid.org/0000-0003-4680-2861","observed_orcids":["https://orcid.org/0000-0003-4680-2861"]},"institutions":[{"id":"https://openalex.org/I34750443","display_name":"Anand Agricultural University","ror":"https://ror.org/050qxn185","country_code":"IN","type":"education","lineage":["https://openalex.org/I34750443"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Chaitanya G. Joshi","raw_affiliation_strings":["Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand, India","institution_ids":["https://openalex.org/I34750443"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066163354","display_name":"Damer P. Blake","orcid":"https://orcid.org/0000-0003-1077-2306","observed_orcids":["https://orcid.org/0000-0003-1077-2306"]},"institutions":[{"id":"https://openalex.org/I133836048","display_name":"Royal Veterinary College","ror":"https://ror.org/01wka8n18","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I133836048"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Damer P. Blake","raw_affiliation_strings":["Department of Pathobiology and Population Sciences, Royal Veterinary College, North Mymms, Hertfordshire, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathobiology and Population Sciences, Royal Veterinary College, North Mymms, Hertfordshire, United Kingdom","institution_ids":["https://openalex.org/I133836048"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5066163354"],"corresponding_institution_ids":["https://openalex.org/I133836048"],"apc_list":{"value":3150,"currency":"CHF","value_usd":3801},"apc_paid":{"value":3150,"currency":"CHF","value_usd":3801},"fwci":5.2307,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.95405706,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"5","issue":null,"first_page":"176","last_page":"176"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12691","display_name":"Coccidia and coccidiosis research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12691","display_name":"Coccidia and coccidiosis research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11074","display_name":"Helminth infection and control","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2405","display_name":"Parasitology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11155","display_name":"Toxoplasma gondii Research Studies","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2405","display_name":"Parasitology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/eimeria","display_name":"Eimeria","score":0.9980000257492065},{"id":"https://openalex.org/keywords/coccidiosis","display_name":"coccidiosis","score":0.9660000205039978},{"id":"https://openalex.org/keywords/broiler-chickens","display_name":"broiler chickens","score":0.746999979019165},{"id":"https://openalex.org/keywords/indigenous-chicken","display_name":"indigenous chicken","score":0.718999981880188},{"id":"https://openalex.org/keywords/kadaknath-chicken","display_name":"Kadaknath chicken","score":0.7379999756813049},{"id":"https://openalex.org/keywords/eimeria-tenella","display_name":"Eimeria tenella","score":0.902999997138977},{"id":"https://openalex.org/keywords/eimeria-necatrix","display_name":"Eimeria necatrix","score":1.0},{"id":"https://openalex.org/keywords/18s-rdna","display_name":"18S rDNA","score":0.8769999742507935},{"id":"https://openalex.org/keywords/caecal-contents","display_name":"caecal contents","score":0.6610000133514404},{"id":"https://openalex.org/keywords/molecular-diagnosis","display_name":"molecular diagnosis","score":0.6370000243186951},{"id":"https://openalex.org/keywords/amplicon-deep-sequencing","display_name":"deep amplicon sequencing","score":0.6520000100135803},{"id":"https://openalex.org/keywords/species-specific-primers","display_name":"species-specific primers","score":0.527999997138977}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6235082745552063},{"id":"https://openalex.org/C2777976947","wikidata":"https://www.wikidata.org/wiki/Q795375","display_name":"Eimeria","level":2,"score":0.5956354141235352},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5869062542915344},{"id":"https://openalex.org/C55958113","wikidata":"https://www.wikidata.org/wiki/Q169480","display_name":"Indigenous","level":2,"score":0.5473187565803528},{"id":"https://openalex.org/C42972112","wikidata":"https://www.wikidata.org/wiki/Q170201","display_name":"Veterinary medicine","level":1,"score":0.384038507938385},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27648788690567017},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14224687218666077},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08063837885856628},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.06973549723625183}],"mesh":[],"locations_count":9,"locations":[{"id":"doi:10.3389/fvets.2018.00176","doi":"https://doi.org/10.3389/fvets.2018.00176","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fvets.2018.00176","pdf_url":"https://www.frontiersin.org/articles/10.3389/fvets.2018.00176/pdf","source":{"id":"https://openalex.org/S2594976040","display_name":"Frontiers in Veterinary Science","issn_l":"2297-1769","issn":["2297-1769"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","ki-jl-1","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Veterinary Science","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:5036286","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6077195","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:30105228","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30105228","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in veterinary science","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6077195","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC6077195/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Front Vet Sci","raw_type":"Text"},{"id":"pmh:oai:researchonline.rvc.ac.uk:11620","doi":null,"is_oa":true,"landing_page_url":"https://researchonline.rvc.ac.uk/id/eprint/11620/1/11620.pdf","pdf_url":"https://researchonline.rvc.ac.uk/id/eprint/11620/1/11620.pdf","source":{"id":"https://openalex.org/S4306402069","display_name":"RVC Research Online (Royal Veterinary College)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I133836048","host_organization_name":"Royal Veterinary College","host_organization_lineage":["https://openalex.org/I133836048"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:294799640c304ed3833f2a37abbd7807","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/294799640c304ed3833f2a37abbd7807","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Veterinary Science, Vol 5 (2018)","raw_type":"article"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/fa0ee729-f3c4-47c8-8668-795cd4825159","doi":null,"is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/fa0ee729-f3c4-47c8-8668-795cd4825159","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hinsu, A T, Thakkar, J R, Koringa, P G, Vrba, V, Jakhesara, S J, Psifidi, A, Guitian, J, Tomley, F M, Rank, D N, Raman, M, Joshi, C G & Blake, D P 2018, 'Illumina Next Generation Sequencing for the Analysis of Populations in Commercial Broilers and Indigenous Chickens', Frontiers in Veterinary Science, vol. 5, pp. 176. https://doi.org/10.3389/fvets.2018.00176","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.60692/e4wt7-96g03","doi":"https://doi.org/10.60692/e4wt7-96g03","is_oa":true,"landing_page_url":"https://doi.org/10.60692/e4wt7-96g03","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.60692/ng73a-0hn77","doi":"https://doi.org/10.60692/ng73a-0hn77","is_oa":true,"landing_page_url":"https://doi.org/10.60692/ng73a-0hn77","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.3389/fvets.2018.00176","doi":"https://doi.org/10.3389/fvets.2018.00176","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fvets.2018.00176","pdf_url":"https://www.frontiersin.org/articles/10.3389/fvets.2018.00176/pdf","source":{"id":"https://openalex.org/S2594976040","display_name":"Frontiers in Veterinary Science","issn_l":"2297-1769","issn":["2297-1769"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","ki-jl-1","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Veterinary Science","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.6875}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1629940866","display_name":null,"funder_award_id":"BT/IN/Indo-UK/FADH/49/CGJ/2013","funder_id":"https://openalex.org/F4320320717","funder_display_name":"Department of Biotechnology, Ministry of Science and Technology, India"},{"id":"https://openalex.org/G2246524483","display_name":null,"funder_award_id":"BB/L00478X","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8070409138","display_name":"Controlling enteric pathogens of poultry: Host/microbiota interactions, risk assessment and effective management interventions","funder_award_id":"BB/L00478X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8593426248","display_name":"Hunt for Exotic Particles: Dibaryons","funder_award_id":"ST/L00478X/1","funder_id":"https://openalex.org/F4320334632","funder_display_name":"Science and Technology Facilities Council"}],"funders":[{"id":"https://openalex.org/F4320320717","display_name":"Department of Biotechnology, Ministry of Science and Technology, India","ror":"https://ror.org/03tjsyq23"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320333771","display_name":"Royal Veterinary College","ror":"https://ror.org/01wka8n18"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320334632","display_name":"Science and Technology Facilities Council","ror":"https://ror.org/057g20z61"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2884798537.pdf","grobid_xml":"https://content.openalex.org/works/W2884798537.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W146732764","https://openalex.org/W163875817","https://openalex.org/W1499500424","https://openalex.org/W1964617663","https://openalex.org/W1969182385","https://openalex.org/W1987263704","https://openalex.org/W1989970467","https://openalex.org/W1990050804","https://openalex.org/W1992549774","https://openalex.org/W1998279054","https://openalex.org/W2010109570","https://openalex.org/W2035084523","https://openalex.org/W2036456050","https://openalex.org/W2038621898","https://openalex.org/W2053045452","https://openalex.org/W2053297217","https://openalex.org/W2062946810","https://openalex.org/W2071826071","https://openalex.org/W2072970694","https://openalex.org/W2074650960","https://openalex.org/W2074706498","https://openalex.org/W2077883112","https://openalex.org/W2086223162","https://openalex.org/W2097382368","https://openalex.org/W2104596287","https://openalex.org/W2117572171","https://openalex.org/W2118396763","https://openalex.org/W2132548846","https://openalex.org/W2133856765","https://openalex.org/W2152077784","https://openalex.org/W2168228888","https://openalex.org/W2169367670","https://openalex.org/W2183707334","https://openalex.org/W2188533297","https://openalex.org/W2204652527","https://openalex.org/W2291547854","https://openalex.org/W2311203695","https://openalex.org/W2343323301","https://openalex.org/W2409717579","https://openalex.org/W2467062547","https://openalex.org/W2756717568","https://openalex.org/W2963191122"],"related_works":["https://openalex.org/W2954764014","https://openalex.org/W4289545701","https://openalex.org/W2074650960","https://openalex.org/W4402925615","https://openalex.org/W4392212939","https://openalex.org/W254441138","https://openalex.org/W6920451666","https://openalex.org/W2066905091","https://openalex.org/W2167079916","https://openalex.org/W3092911960"],"abstract_inverted_index":{"Eimeria":[0,22,43,101,169,192,215,227,249],"species":[1,23,181,216],"parasites":[2],"can":[3],"cause":[4],"the":[5,14,50,57,87,164,189,200,205],"enteric":[6],"disease":[7],"coccidiosis,":[8],"most":[9,201],"notably":[10],"in":[11,45,109],"chickens":[12,46,118,130,184],"where":[13],"economic":[15],"and":[16,36,56,114,151,171,198],"welfare":[17],"implications":[18],"are":[19,24],"significant.":[20],"Seven":[21],"recognized":[25],"to":[26,59,74,94,207],"infect":[27,183],"chickens,":[28],"although":[29,178],"understanding":[30],"of":[31,42,49,68,89,142,188,211],"their":[32],"regional":[33],"occurrence,":[34],"abundance":[35],"population":[37],"structure":[38],"remains":[39],"limited.":[40],"Reports":[41],"circulating":[44],"across":[47],"much":[48],"southern":[51],"hemisphere":[52],"with":[53,80,145,223],"cryptic":[54,191],"genotypes":[55,193],"capacity":[58],"escape":[60],"current":[61],"anticoccidial":[62],"vaccines":[63],"have":[64],"revealed":[65],"unexpected":[66],"levels":[67,210],"complexity.":[69],"Consequently,":[70],"it":[71],"is":[72],"important":[73],"supplement":[75],"validated":[76],"species-specific":[77],"molecular":[78],"diagnostics":[79],"new":[81],"genus-level":[82],"tools.":[83],"Here,":[84],"we":[85],"report":[86,203],"application":[88],"Illumina":[90],"MiSeq":[91,143,165],"deep":[92,240],"sequencing":[93,242],"partial":[95],"18S":[96],"rDNA":[97],"amplicons":[98],"generated":[99],"using":[100],"genus-specific":[102],"primers":[103],"from":[104],"chicken":[105],"caecal":[106],"contents":[107],"collected":[108],"India.":[110],"Commercial":[111],"Cobb400":[112],"broiler":[113],"indigenous":[115],"Kadaknath":[116],"type":[117,127,137],"were":[119,185,194,217],"sampled":[120],"under":[121],"field":[122],"conditions":[123],"after":[124],"co-rearing":[125],"(mixed":[126],"farms,":[128,138],"n=150":[129,139],"for":[131,163,204,235,247],"each)":[132],"or":[133,226,229],"separate":[134],"rearing":[135],"(single":[136],"each).":[140],"Comparison":[141],"results":[144],"established":[146],"Internal":[147],"Transcribed":[148],"Spacer":[149],"(ITS)":[150],"Sequence":[152],"Characterised":[153],"Amplified":[154],"Region":[155],"(SCAR)":[156],"quantitative":[157],"PCR":[158],"assays":[159],"suggest":[160],"greater":[161],"sensitivity":[162],"approach.":[166],"The":[167],"caecal-dwelling":[168],"tenella":[170],"E.":[172],"necatrix":[173],"dominated":[174],"each":[175],"sample":[176],"set,":[177],"all":[179],"seven":[180],"which":[182],"detected.":[186],"Two":[187],"three":[190],"detected":[195],"including":[196],"OTU-X":[197],"OTU-Y,":[199],"northern":[202],"latter":[206],"date.":[208],"Low":[209],"DNA":[212],"representing":[213,220],"other":[214],"detected,":[218],"possibly":[219],"farm-level":[221],"contamination":[222],"non-replicating":[224],"oocysts":[225],"DNA,":[228],"false":[230],"positives,":[231],"indicating":[232],"a":[233,244],"requirement":[234],"additional":[236],"validation.":[237],"Next":[238],"generation":[239],"amplicon":[241],"offers":[243],"valuable":[245],"resource":[246],"future":[248],"studies.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2018-08-03T00:00:00"}