{"id":"https://openalex.org/W2883355917","doi":"https://doi.org/10.1038/s41396-018-0221-y","title":"Insights into global planktonic diatom diversity: The importance of comparisons between phylogenetically equivalent units that account for time","display_name":"Insights into global planktonic diatom diversity: The importance of comparisons between phylogenetically equivalent units that account for time","publication_year":2018,"publication_date":"2018-07-16","ids":{"openalex":"https://openalex.org/W2883355917","doi":"https://doi.org/10.1038/s41396-018-0221-y","mag":"2883355917","pmid":"https://pubmed.ncbi.nlm.nih.gov/30013161","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6194113"},"language":"en","primary_location":{"id":"doi:10.1038/s41396-018-0221-y","doi":"https://doi.org/10.1038/s41396-018-0221-y","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41396-018-0221-y","pdf_url":"https://www.nature.com/articles/s41396-018-0221-y.pdf","source":{"id":"https://openalex.org/S149218730","display_name":"The ISME Journal","issn_l":"1751-7362","issn":["1751-7362","1751-7370"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The ISME Journal","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://www.nature.com/articles/s41396-018-0221-y.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019553423","display_name":"Teofil Nakov","orcid":"https://orcid.org/0000-0002-5023-9269","observed_orcids":["https://orcid.org/0000-0002-5023-9269"]},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Teofil Nakov","raw_affiliation_strings":["Department of Biological Sciences, University of Arkansas, SCEN 601, Fayetteville, AR, 72701, USA"],"raw_orcid":"https://orcid.org/0000-0002-5023-9269","affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Arkansas, SCEN 601, Fayetteville, AR, 72701, USA","institution_ids":["https://openalex.org/I78715868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032882921","display_name":"Jeremy M. Beaulieu","orcid":"https://orcid.org/0000-0001-5953-1701","observed_orcids":["https://orcid.org/0000-0001-5953-1701"]},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy M Beaulieu","raw_affiliation_strings":["Department of Biological Sciences, University of Arkansas, SCEN 601, Fayetteville, AR, 72701, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Arkansas, SCEN 601, Fayetteville, AR, 72701, USA","institution_ids":["https://openalex.org/I78715868"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054075380","display_name":"Andrew James Alverson","orcid":"https://orcid.org/0000-0003-1241-2654","observed_orcids":["https://orcid.org/0000-0003-1241-2654"]},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew J Alverson","raw_affiliation_strings":["Department of Biological Sciences, University of Arkansas, SCEN 601, Fayetteville, AR, 72701, USA"],"raw_orcid":"https://orcid.org/0000-0003-1241-2654","affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Arkansas, SCEN 601, Fayetteville, AR, 72701, USA","institution_ids":["https://openalex.org/I78715868"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5019553423"],"corresponding_institution_ids":["https://openalex.org/I78715868"],"apc_list":{"value":3675,"currency":"EUR","value_usd":4153},"apc_paid":null,"fwci":5.2647,"has_fulltext":true,"cited_by_count":48,"citation_normalized_percentile":{"value":0.95795339,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"12","issue":"11","first_page":"2807","last_page":"2810"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.8920999765396118,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.8920999765396118,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.06539999693632126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.033399999141693115,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/planktonic-diatoms","display_name":"planktonic diatoms","score":0.9660000205039978},{"id":"https://openalex.org/keywords/microbial-diversity","display_name":"microbial diversity","score":0.7549999952316284},{"id":"https://openalex.org/keywords/species-richness","display_name":"species richness","score":0.7929999828338623},{"id":"https://openalex.org/keywords/speciation-and-extinction-rates","display_name":"speciation and extinction rates","score":0.9210000038146973},{"id":"https://openalex.org/keywords/metabarcoding","display_name":"metabarcoding","score":0.8040000200271606},{"id":"https://openalex.org/keywords/marine-plankton","display_name":"marine plankton","score":0.5139999985694885},{"id":"https://openalex.org/keywords/biodiversity-analysis","display_name":"biodiversity analysis","score":0.3619999885559082}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.958809494972229},{"id":"https://openalex.org/C2778902744","wikidata":"https://www.wikidata.org/wiki/Q162678","display_name":"Diatom","level":2,"score":0.819011926651001},{"id":"https://openalex.org/C108469399","wikidata":"https://www.wikidata.org/wiki/Q25367","display_name":"Plankton","level":2,"score":0.7918152809143066},{"id":"https://openalex.org/C2781411663","wikidata":"https://www.wikidata.org/wiki/Q476392","display_name":"Geomicrobiology","level":5,"score":0.6774513125419617},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.5144705772399902},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.45328712463378906},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4102155566215515},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33303532004356384},{"id":"https://openalex.org/C69562835","wikidata":"https://www.wikidata.org/wiki/Q3054637","display_name":"Microbial ecology","level":3,"score":0.2554742693901062},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.2238491177558899},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.20139524340629578},{"id":"https://openalex.org/C186795189","wikidata":"https://www.wikidata.org/wiki/Q3631109","display_name":"Environmental biotechnology","level":4,"score":0.11703050136566162},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010839","descriptor_name":"Phytoplankton","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010839","descriptor_name":"Phytoplankton","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010839","descriptor_name":"Phytoplankton","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D017377","descriptor_name":"Diatoms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D017377","descriptor_name":"Diatoms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017377","descriptor_name":"Diatoms","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1038/s41396-018-0221-y","doi":"https://doi.org/10.1038/s41396-018-0221-y","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41396-018-0221-y","pdf_url":"https://www.nature.com/articles/s41396-018-0221-y.pdf","source":{"id":"https://openalex.org/S149218730","display_name":"The ISME Journal","issn_l":"1751-7362","issn":["1751-7362","1751-7370"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The ISME Journal","raw_type":"journal-article"},{"id":"doi:10.1101/167809","doi":"https://doi.org/10.1101/167809","is_oa":true,"landing_page_url":"https://doi.org/10.1101/167809","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2017/07/24/167809.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:europepmc.org:5784799","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6194113","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6194113","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6194113","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISME J","raw_type":"Text"},{"id":"pmid:30013161","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30013161","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The ISME journal","raw_type":"Comparative Study"}],"best_oa_location":{"id":"doi:10.1038/s41396-018-0221-y","doi":"https://doi.org/10.1038/s41396-018-0221-y","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41396-018-0221-y","pdf_url":"https://www.nature.com/articles/s41396-018-0221-y.pdf","source":{"id":"https://openalex.org/S149218730","display_name":"The ISME Journal","issn_l":"1751-7362","issn":["1751-7362","1751-7370"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The ISME Journal","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1886663377","display_name":"Collaborative Research: Evaluating the Contributions of Horizontally Transferred Bacterial Genes and Endogenous Duplication Events to the Diversification of Diatoms","funder_award_id":"1353131","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G244357235","display_name":null,"funder_award_id":"DEB\u20101353131","funder_id":"https://openalex.org/F4320337400","funder_display_name":"Division of Environmental Biology"},{"id":"https://openalex.org/G5760147803","display_name":null,"funder_award_id":"403249","funder_id":"https://openalex.org/F4320306164","funder_display_name":"Simons Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306164","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727"},{"id":"https://openalex.org/F4320316941","display_name":"Arkansas Economic Development Commission","ror":"https://ror.org/01b047235"},{"id":"https://openalex.org/F4320334023","display_name":"Arkansas High Performance Computing Center, University of Arkansas","ror":null},{"id":"https://openalex.org/F4320337400","display_name":"Division of Environmental Biology","ror":"https://ror.org/03g87he71"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2883355917.pdf","grobid_xml":"https://content.openalex.org/works/W2883355917.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1488393970","https://openalex.org/W1881066983","https://openalex.org/W1972556644","https://openalex.org/W2010394979","https://openalex.org/W2025444767","https://openalex.org/W2031187632","https://openalex.org/W2051729147","https://openalex.org/W2093675343","https://openalex.org/W2127175247","https://openalex.org/W2129353705","https://openalex.org/W2166123725","https://openalex.org/W2290413657","https://openalex.org/W2538394179","https://openalex.org/W2795900490","https://openalex.org/W4388245928","https://openalex.org/W6930713709"],"related_works":["https://openalex.org/W6999725937","https://openalex.org/W4283784702","https://openalex.org/W4322773140","https://openalex.org/W755505883","https://openalex.org/W4405396016","https://openalex.org/W3012502170","https://openalex.org/W3003357806","https://openalex.org/W4214827258","https://openalex.org/W4390542564","https://openalex.org/W6964237165"],"abstract_inverted_index":{"Metabarcoding":[0],"has":[1],"offered":[2],"unprecedented":[3],"insights":[4],"into":[5,16],"microbial":[6,158],"diversity.":[7,159],"In":[8],"many":[9],"studies,":[10],"short":[11],"DNA":[12],"sequences":[13],"are":[14,26,38,46],"binned":[15],"consecutively":[17],"lower":[18],"Linnaean":[19,36],"ranks,":[20],"and":[21,41,125],"ranked":[22,44],"groups":[23,45],"(e.g.,":[24],"genera)":[25],"the":[27,59,67,85,149],"units":[28],"of":[29,61,87,105,123,152,157],"biodiversity":[30],"analyses.":[31,145],"These":[32,146],"analyses":[33,136],"assume":[34],"that":[35,42,66,109],"ranks":[37],"biologically":[39],"meaningful":[40],"identically":[43],"comparable.":[47],"We":[48,64],"used":[49],"a":[50],"metabarcode":[51],"dataset":[52],"for":[53],"marine":[54,71],"planktonic":[55,72],"diatoms":[56],"to":[57,80,95],"illustrate":[58],"limits":[60],"this":[62],"approach.":[63],"found":[65],"20":[68],"most":[69],"abundant":[70],"diatom":[73],"genera":[74,88,115],"ranged":[75],"in":[76,111,121,154],"age":[77],"from":[78],"4":[79],"134":[81],"million":[82],"years,":[83],"indicating":[84],"non-equivalence":[86],"because":[89],"some":[90],"have":[91],"had":[92],"more":[93],"time":[94],"diversify":[96],"than":[97],"others.":[98],"However,":[99],"species":[100,112],"richness":[101,113],"was":[102],"largely":[103],"independent":[104],"genus":[106],"age,":[107],"suggesting":[108],"disparities":[110],"among":[114],"were":[116],"better":[117],"explained":[118],"by":[119],"variation":[120],"rates":[122],"speciation":[124],"extinction.":[126],"Taxonomic":[127],"classifications":[128],"often":[129],"do":[130],"not":[131],"reflect":[132],"phylogeny,":[133],"so":[134],"genus-level":[135],"can":[137],"include":[138],"phylogenetically":[139],"nested":[140],"genera,":[141],"further":[142],"confounding":[143],"rank-based":[144],"results":[147],"underscore":[148],"indispensable":[150],"role":[151],"phylogeny":[153],"understanding":[155],"patterns":[156]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2018-08-03T00:00:00"}