{"id":"https://openalex.org/W2808765156","doi":"https://doi.org/10.1016/j.jctube.2018.06.004","title":"Genotyping of mycobacterium tuberculosis isolated from pulmonary tuberculosis patients among people living with HIV in Addis Ababa: Cross-sectional study","display_name":"Genotyping of mycobacterium tuberculosis isolated from pulmonary tuberculosis patients among people living with HIV in Addis Ababa: Cross-sectional study","publication_year":2018,"publication_date":"2018-06-19","ids":{"openalex":"https://openalex.org/W2808765156","doi":"https://doi.org/10.1016/j.jctube.2018.06.004","mag":"2808765156","pmid":"https://pubmed.ncbi.nlm.nih.gov/31720396","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6830125"},"language":"en","primary_location":{"id":"doi:10.1016/j.jctube.2018.06.004","doi":"https://doi.org/10.1016/j.jctube.2018.06.004","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.jctube.2018.06.004","pdf_url":null,"source":{"id":"https://openalex.org/S2898488464","display_name":"Journal of Clinical Tuberculosis and Other Mycobacterial Diseases","issn_l":"2405-5794","issn":["2405-5794"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","ki-jl-1","norway-1","oarl","poland-70","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Tuberculosis and Other Mycobacterial Diseases","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.jctube.2018.06.004","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047764635","display_name":"Alemu Chemeda Ifa","orcid":"https://orcid.org/0000-0002-7895-9225","observed_orcids":["https://orcid.org/0000-0002-7895-9225"]},"institutions":[{"id":"https://openalex.org/I42869670","display_name":"Arba Minch University","ror":"https://ror.org/00ssp9h11","country_code":"ET","type":"education","lineage":["https://openalex.org/I42869670"]}],"countries":["ET"],"is_corresponding":true,"raw_author_name":"Alemu Chemeda","raw_affiliation_strings":["Arbaminch University, College of Natural Science, Department of Biology, Arba Minch, Addis Ababa, Ethiopia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arbaminch University, College of Natural Science, Department of Biology, Arba Minch, Addis Ababa, Ethiopia","institution_ids":["https://openalex.org/I42869670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039624437","display_name":"Adane Mihret","orcid":"https://orcid.org/0000-0003-3183-4772","observed_orcids":["https://orcid.org/0000-0003-3183-4772"]},"institutions":[{"id":"https://openalex.org/I4210159743","display_name":"Armauer Hansen Research Institute","ror":"https://ror.org/05mfff588","country_code":"ET","type":"facility","lineage":["https://openalex.org/I4210159743"]},{"id":"https://openalex.org/I4537092","display_name":"Addis Ababa University","ror":"https://ror.org/038b8e254","country_code":"ET","type":"education","lineage":["https://openalex.org/I4537092"]}],"countries":["ET"],"is_corresponding":false,"raw_author_name":"Adane Mihret","raw_affiliation_strings":["Addis Ababa University, School of Medicine, College of Health Science, Department of Medical Microbiology, Immunology and Parasitology, Addis Ababa, Ethiopia","Armauer Hansen Research Institute, Immunology Unit, Addis Ababa, Ethiopia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Addis Ababa University, School of Medicine, College of Health Science, Department of Medical Microbiology, Immunology and Parasitology, Addis Ababa, Ethiopia","institution_ids":["https://openalex.org/I4537092"]},{"raw_affiliation_string":"Armauer Hansen Research Institute, Immunology Unit, Addis Ababa, Ethiopia","institution_ids":["https://openalex.org/I4210159743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114005784","display_name":"Tamrat Abebe","orcid":"https://orcid.org/0000-0002-6100-9303","observed_orcids":["https://orcid.org/0000-0002-6100-9303"]},"institutions":[{"id":"https://openalex.org/I4537092","display_name":"Addis Ababa University","ror":"https://ror.org/038b8e254","country_code":"ET","type":"education","lineage":["https://openalex.org/I4537092"]}],"countries":["ET"],"is_corresponding":false,"raw_author_name":"Tamrat Abebe","raw_affiliation_strings":["Addis Ababa University, School of Medicine, College of Health Science, Department of Medical Microbiology, Immunology and Parasitology, Addis Ababa, Ethiopia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Addis Ababa University, School of Medicine, College of Health Science, Department of Medical Microbiology, Immunology and Parasitology, Addis Ababa, Ethiopia","institution_ids":["https://openalex.org/I4537092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110953158","display_name":"Adane Worku","orcid":"https://orcid.org/0000-0003-3106-3832","observed_orcids":["https://orcid.org/0000-0003-3106-3832"]},"institutions":[{"id":"https://openalex.org/I4537092","display_name":"Addis Ababa University","ror":"https://ror.org/038b8e254","country_code":"ET","type":"education","lineage":["https://openalex.org/I4537092"]}],"countries":["ET"],"is_corresponding":false,"raw_author_name":"Adane Worku","raw_affiliation_strings":["Aklilu Lema Pathobiology Research Institution, Addis Ababa University, Addis Ababa, Ethiopia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aklilu Lema Pathobiology Research Institution, Addis Ababa University, Addis Ababa, Ethiopia","institution_ids":["https://openalex.org/I4537092"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057291424","display_name":"Gobena Ameni","orcid":"https://orcid.org/0000-0003-3987-0671","observed_orcids":["https://orcid.org/0000-0003-3987-0671"]},"institutions":[{"id":"https://openalex.org/I4537092","display_name":"Addis Ababa University","ror":"https://ror.org/038b8e254","country_code":"ET","type":"education","lineage":["https://openalex.org/I4537092"]}],"countries":["ET"],"is_corresponding":false,"raw_author_name":"Gobena Ameni","raw_affiliation_strings":["Aklilu Lema Pathobiology Research Institution, Addis Ababa University, Addis Ababa, Ethiopia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aklilu Lema Pathobiology Research Institution, Addis Ababa University, Addis Ababa, Ethiopia","institution_ids":["https://openalex.org/I4537092"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5047764635"],"corresponding_institution_ids":["https://openalex.org/I42869670"],"apc_list":{"value":2470,"currency":"USD","value_usd":2470},"apc_paid":{"value":2470,"currency":"USD","value_usd":2470},"fwci":0.1887,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.51818156,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"12","issue":null,"first_page":"34","last_page":"37"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11381","display_name":"Infectious Diseases and Tuberculosis","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.9940000176429749},{"id":"https://openalex.org/keywords/spoligotyping","display_name":"spoligotyping","score":0.9010000228881836},{"id":"https://openalex.org/keywords/tuberculosis-hiv-co-infection","display_name":"tuberculosis-HIV coinfection","score":0.6740000247955322},{"id":"https://openalex.org/keywords/pulmonary-tuberculosis","display_name":"pulmonary tuberculosis","score":0.9890000224113464},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"genetic diversity","score":0.7409999966621399},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis-lineages","display_name":"Mycobacterium tuberculosis lineages","score":0.7599999904632568},{"id":"https://openalex.org/keywords/addis-ababa","display_name":"Addis Ababa","score":0.7940000295639038}],"concepts":[{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.8038212656974792},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.7575539350509644},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.725511908531189},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.6580025553703308},{"id":"https://openalex.org/C2776301714","wikidata":"https://www.wikidata.org/wiki/Q259346","display_name":"Sputum","level":3,"score":0.5735312104225159},{"id":"https://openalex.org/C142052008","wikidata":"https://www.wikidata.org/wiki/Q954027","display_name":"Cross-sectional study","level":2,"score":0.48280370235443115},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.35732942819595337},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.3238101005554199},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21295490860939026},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12896978855133057},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11834806203842163},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1146044135093689}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1016/j.jctube.2018.06.004","doi":"https://doi.org/10.1016/j.jctube.2018.06.004","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.jctube.2018.06.004","pdf_url":null,"source":{"id":"https://openalex.org/S2898488464","display_name":"Journal of Clinical Tuberculosis and Other Mycobacterial Diseases","issn_l":"2405-5794","issn":["2405-5794"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","ki-jl-1","norway-1","oarl","poland-70","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Tuberculosis and Other Mycobacterial Diseases","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6830125","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6830125","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Clin Tuberc Other Mycobact Dis","raw_type":"Text"},{"id":"pmid:31720396","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31720396","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of clinical tuberculosis and other mycobacterial diseases","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:351dde951f104f71ab88bf048e9edeb3","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/351dde951f104f71ab88bf048e9edeb3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Clinical Tuberculosis and Other Mycobacterial Diseases, Vol 12, Iss , Pp 34-37 (2018)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1016/j.jctube.2018.06.004","doi":"https://doi.org/10.1016/j.jctube.2018.06.004","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.jctube.2018.06.004","pdf_url":null,"source":{"id":"https://openalex.org/S2898488464","display_name":"Journal of Clinical Tuberculosis and Other Mycobacterial Diseases","issn_l":"2405-5794","issn":["2405-5794"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","ki-jl-1","norway-1","oarl","poland-70","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Tuberculosis and Other Mycobacterial Diseases","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.9537000060081482,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[{"display_name":"Observational Study","id":"https://openalex.org/study-designs/observational-study"}],"awards":[{"id":"https://openalex.org/G9000916767","display_name":"Ethiopia-Emory TB Research Training Program","funder_award_id":"D43TW009127","funder_id":"https://openalex.org/F4320337356","funder_display_name":"Fogarty International Center"}],"funders":[{"id":"https://openalex.org/F4320337356","display_name":"Fogarty International Center","ror":"https://ror.org/02xey9a22"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1559165175","https://openalex.org/W1683856031","https://openalex.org/W1964657494","https://openalex.org/W1974995346","https://openalex.org/W2017692297","https://openalex.org/W2032038202","https://openalex.org/W2046705333","https://openalex.org/W2087971638","https://openalex.org/W2096162460","https://openalex.org/W2098069707","https://openalex.org/W2106813347","https://openalex.org/W2113265821","https://openalex.org/W2120254719","https://openalex.org/W2134558351","https://openalex.org/W2144181169","https://openalex.org/W2152363872","https://openalex.org/W2157542228","https://openalex.org/W2166137292","https://openalex.org/W2332916339","https://openalex.org/W2398350456"],"related_works":["https://openalex.org/W1984854040","https://openalex.org/W7098860373","https://openalex.org/W4398145003","https://openalex.org/W7099368473","https://openalex.org/W4400361006","https://openalex.org/W1886596286","https://openalex.org/W2221633492","https://openalex.org/W4304789118","https://openalex.org/W2018825614","https://openalex.org/W2297027134"],"abstract_inverted_index":{"Tuberculosis":[0],"is":[1,6],"a":[2,33],"serious":[3],"infection":[4],"that":[5],"common":[7],"in":[8,36,206,217,221,233],"people":[9,74],"living":[10,75],"with":[11,76],"HIV":[12],"and":[13,17,39,52,86,116,125,160,182,191,201],"increases":[14],"the":[15,20,123,126,145,167,173,179,194,212,228,234],"mortality":[16],"morbidity":[18],"from":[19,69],"diseases.":[21],"The":[22,57,93,155],"study":[23,61],"of":[24,29,46,59,80,109,140,172,178,215],"genetic":[25],"diversity":[26,141,214],"among":[27,73,144],"strains":[28,231],"M.":[30],"tuberculosis":[31,66,72,219],"has":[32],"great":[34],"impact":[35],"studying":[37],"pathogenicity":[38],"transmissibility,":[40],"design":[41],"for":[42,49,98],"vaccines":[43],"production,":[44],"identification":[45],"nominee":[47],"genes":[48],"drug":[50],"targets,":[51],"improving":[53],"molecular":[54],"diagnostic":[55],"techniques.":[56],"aim":[58],"this":[60,222],"was":[62,84,112,142],"to":[63,88,120,188,208],"characterize":[64],"Mycobacterium":[65],"(Mtb)":[67],"isolated":[68],"suspected":[70],"pulmonary":[71,218],"HIV.":[77],"A":[78,137],"total":[79,174,195],"143":[81],"sputum":[82],"samples":[83,95],"collected":[85,94],"transported":[87],"Akililu":[89],"Lemma":[90],"TB":[91],"laboratory.":[92],"were":[96,118,132,153,166,185,199],"processed":[97],"culture":[99,105],"using":[100,122],"Lowenstein-Jensen":[101],"medium.":[102],"For":[103],"45":[104,146],"positive":[106],"isolates,":[107],"genotyping":[108],"mycobacterial":[110],"DNA":[111],"performed":[113],"by":[114,134],"spoligotyping":[115],"isolates":[117,169],"assigned":[119],"families":[121,165],"SpolDB4":[124,207],"model-based":[127],"program":[128],"\u2018SPOTCLUST\u2019.":[129],"Categorical":[130],"data":[131],"analyzed":[133],"Chi-square":[135],"test.":[136],"high":[138,213],"level":[139],"found":[143,211],"isolates.":[147],"Twenty":[148],"six":[149],"different":[150],"Spoligo":[151],"patterns":[152],"obtained.":[154],"T":[156],"(46.7%),":[157],"Family33":[158],"(44.4%)":[159],"Central":[161],"Asian":[162],"(CAS):":[163],"(4.4%)":[164],"dominant":[168],"comprising":[170],"91.5%":[171],"strains.":[175],"Of":[176,193],"44%":[177],"Euro-American,":[180],"6/20(30%)":[181],"9/20(45%),":[183],"identified":[184,226],"lineage":[186],"belonged":[187],"Spoligo-International-Type":[189],"(SIT336)":[190],"SIT149.":[192],"strains,":[196],"12":[197],"(22%)":[198],"unique":[200],"have":[202],"not":[203],"been":[204],"described":[205],"date.":[209],"We":[210],"Mtb":[216],"patients":[220],"setting.":[223],"T3_ETH":[224],"family":[225],"as":[227],"numerous":[229],"M.tuberculosis":[230],"circulating":[232],"community.":[235]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-10-30T12:39:25.321706","created_date":"2018-06-29T00:00:00"}
