{"id":"https://openalex.org/W2808750574","doi":"https://doi.org/10.1099/jmm.0.000773","title":"Ecology and diversity in upper respiratory tract microbial population structures from a cross-sectional community swabbing study","display_name":"Ecology and diversity in upper respiratory tract microbial population structures from a cross-sectional community swabbing study","publication_year":2018,"publication_date":"2018-06-21","ids":{"openalex":"https://openalex.org/W2808750574","doi":"https://doi.org/10.1099/jmm.0.000773","mag":"2808750574","pmid":"https://pubmed.ncbi.nlm.nih.gov/29927372"},"language":"en","primary_location":{"id":"doi:10.1099/jmm.0.000773","doi":"https://doi.org/10.1099/jmm.0.000773","is_oa":false,"landing_page_url":"https://doi.org/10.1099/jmm.0.000773","pdf_url":null,"source":{"id":"https://openalex.org/S154078021","display_name":"Journal of Medical Microbiology","issn_l":"0022-2615","issn":["0022-2615","1473-5644"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320497","host_organization_name":"Microbiology Society","host_organization_lineage":["https://openalex.org/P4310320497"],"host_organization_lineage_names":["Microbiology Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Medical Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067907225","display_name":"Abigail L. Coughtrie","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Abigail L. Coughtrie","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047931092","display_name":"Denise E. Morris","orcid":"https://orcid.org/0000-0002-8920-0812","observed_orcids":["https://orcid.org/0000-0002-8920-0812"]},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Denise E. Morris","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Rebecca Anderson","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rebecca Anderson","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001309240","display_name":"Nelupha Begum","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nelupha Begum","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006648799","display_name":"David William Cleary","orcid":"https://orcid.org/0000-0003-4533-0700","observed_orcids":["https://orcid.org/0000-0003-4533-0700"]},"institutions":[{"id":"https://openalex.org/I2802965805","display_name":"University Hospital Southampton NHS Foundation Trust","ror":"https://ror.org/0485axj58","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802965805"]},{"id":"https://openalex.org/I4210118229","display_name":"NIHR Southampton Biomedical Research Centre","ror":"https://ror.org/01qqpzg67","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802965805","https://openalex.org/I4210118229","https://openalex.org/I43439940"]},{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David W. Cleary","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","2\u200bNIHR Southampton Biomedical Research Centre, University Hospital Southampton Foundation NHS Trust, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]},{"raw_affiliation_string":"2\u200bNIHR Southampton Biomedical Research Centre, University Hospital Southampton Foundation NHS Trust, Southampton, UK","institution_ids":["https://openalex.org/I2802965805","https://openalex.org/I4210118229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073745658","display_name":"Saul N. Faust","orcid":"https://orcid.org/0000-0003-3410-7642","observed_orcids":["https://orcid.org/0000-0003-3410-7642"]},"institutions":[{"id":"https://openalex.org/I2802965805","display_name":"University Hospital Southampton NHS Foundation Trust","ror":"https://ror.org/0485axj58","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802965805"]},{"id":"https://openalex.org/I4210110707","display_name":"NIHR Southampton Respiratory Biomedical Research Unit","ror":"https://ror.org/01yg3ff09","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802965805","https://openalex.org/I34931013","https://openalex.org/I4210110707","https://openalex.org/I4210118229","https://openalex.org/I43439940"]},{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Saul N. Faust","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","3\u200bNIHR Southampton Clinical Research Facility, University Hospital Southampton Foundation NHS Trust, Southampton, UK","4\u200bNIHR Southampton Respiratory Biomedical Research Unit, University Hospital Southampton Foundation NHS Trust, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]},{"raw_affiliation_string":"3\u200bNIHR Southampton Clinical Research Facility, University Hospital Southampton Foundation NHS Trust, Southampton, UK","institution_ids":["https://openalex.org/I2802965805"]},{"raw_affiliation_string":"4\u200bNIHR Southampton Respiratory Biomedical Research Unit, University Hospital Southampton Foundation NHS Trust, Southampton, UK","institution_ids":["https://openalex.org/I2802965805","https://openalex.org/I4210110707"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008907730","display_name":"Johanna M. Jefferies","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I2802965805","display_name":"University Hospital Southampton NHS Foundation Trust","ror":"https://ror.org/0485axj58","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802965805"]},{"id":"https://openalex.org/I4210110707","display_name":"NIHR Southampton Respiratory Biomedical Research Unit","ror":"https://ror.org/01yg3ff09","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802965805","https://openalex.org/I34931013","https://openalex.org/I4210110707","https://openalex.org/I4210118229","https://openalex.org/I43439940"]},{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Johanna M. Jefferies","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","4\u200bNIHR Southampton Respiratory Biomedical Research Unit, University Hospital Southampton Foundation NHS Trust, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]},{"raw_affiliation_string":"4\u200bNIHR Southampton Respiratory Biomedical Research Unit, University Hospital Southampton Foundation NHS Trust, Southampton, UK","institution_ids":["https://openalex.org/I2802965805","https://openalex.org/I4210110707"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112861164","display_name":"Alex R. Kraaijeveld","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alex R. Kraaijeveld","raw_affiliation_strings":["5\u200bCentre for Biological Sciences, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"5\u200bCentre for Biological Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053346837","display_name":"Michael V Moore","orcid":"https://orcid.org/0000-0002-5127-4509","observed_orcids":["https://orcid.org/0000-0002-5127-4509","https://orcid.org/0000-0003-4911-6437"]},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael V. Moore","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021270298","display_name":"Mark Mullee","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I2802965805","display_name":"University Hospital Southampton NHS Foundation Trust","ror":"https://ror.org/0485axj58","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802965805"]},{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark A. Mullee","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","6\u200bNIHR Research Design Service South Central, University Hospital Southampton Foundation NHS Trust, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]},{"raw_affiliation_string":"6\u200bNIHR Research Design Service South Central, University Hospital Southampton Foundation NHS Trust, Southampton, UK","institution_ids":["https://openalex.org/I2802965805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005373304","display_name":"Paul J. Roderick","orcid":"https://orcid.org/0000-0001-9475-6850","observed_orcids":["https://orcid.org/0000-0001-9475-6850"]},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul J. Roderick","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","7\u200bGlobal Health Research Institute, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]},{"raw_affiliation_string":"7\u200bGlobal Health Research Institute, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018468040","display_name":"Andrew C. Tuck","orcid":"https://orcid.org/0000-0001-8137-3148","observed_orcids":["https://orcid.org/0000-0001-8137-3148"]},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Tuck","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053222121","display_name":"Robert Neil Whittaker","orcid":"https://orcid.org/0000-0003-2810-7734","observed_orcids":["https://orcid.org/0000-0003-2810-7734"]},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert N. Whittaker","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001308397","display_name":"Ho Ming Yuen","orcid":"https://orcid.org/0000-0002-3424-7410","observed_orcids":["https://orcid.org/0000-0002-3424-7410"]},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ho Ming Yuen","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027038365","display_name":"Charles Patrick Doncaster","orcid":"https://orcid.org/0000-0001-9406-0693","observed_orcids":["https://orcid.org/0000-0001-9406-0693"]},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"C. Patrick Doncaster","raw_affiliation_strings":["5\u200bCentre for Biological Sciences, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"5\u200bCentre for Biological Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071795903","display_name":"Stuart C. Clarke","orcid":"https://orcid.org/0000-0002-7009-1548","observed_orcids":["https://orcid.org/0000-0002-7009-1548"]},"institutions":[{"id":"https://openalex.org/I2802965805","display_name":"University Hospital Southampton NHS Foundation Trust","ror":"https://ror.org/0485axj58","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802965805"]},{"id":"https://openalex.org/I4210110707","display_name":"NIHR Southampton Respiratory Biomedical Research Unit","ror":"https://ror.org/01yg3ff09","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802965805","https://openalex.org/I34931013","https://openalex.org/I4210110707","https://openalex.org/I4210118229","https://openalex.org/I43439940"]},{"id":"https://openalex.org/I4210118229","display_name":"NIHR Southampton Biomedical Research Centre","ror":"https://ror.org/01qqpzg67","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802965805","https://openalex.org/I4210118229","https://openalex.org/I43439940"]},{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stuart C. Clarke","raw_affiliation_strings":["1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","2\u200bNIHR Southampton Biomedical Research Centre, University Hospital Southampton Foundation NHS Trust, Southampton, UK","4\u200bNIHR Southampton Respiratory Biomedical Research Unit, University Hospital Southampton Foundation NHS Trust, Southampton, UK","7\u200bGlobal Health Research Institute, University of Southampton, Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1\u200bFaculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]},{"raw_affiliation_string":"2\u200bNIHR Southampton Biomedical Research Centre, University Hospital Southampton Foundation NHS Trust, Southampton, UK","institution_ids":["https://openalex.org/I2802965805","https://openalex.org/I4210118229"]},{"raw_affiliation_string":"4\u200bNIHR Southampton Respiratory Biomedical Research Unit, University Hospital Southampton Foundation NHS Trust, Southampton, UK","institution_ids":["https://openalex.org/I2802965805","https://openalex.org/I4210110707"]},{"raw_affiliation_string":"7\u200bGlobal Health Research Institute, University of Southampton, Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7502,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.68180757,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"67","issue":"8","first_page":"1096","last_page":"1108"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11243","display_name":"Respiratory viral infections research","score":0.5009999871253967,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11243","display_name":"Respiratory viral infections research","score":0.5009999871253967,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10654","display_name":"Pneumonia and Respiratory Infections","score":0.21040000021457672,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.09790000319480896,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upper-respiratory-tract-microbiota","display_name":"upper respiratory tract microbiota","score":0.8270000219345093},{"id":"https://openalex.org/keywords/respiratory-tract-infections","display_name":"respiratory infections","score":0.6620000004768372},{"id":"https://openalex.org/keywords/community-assembly","display_name":"community assembly","score":0.5329999923706055},{"id":"https://openalex.org/keywords/species-frequency-distribution","display_name":"species frequency distribution","score":0.5210000276565552},{"id":"https://openalex.org/keywords/facilitation","display_name":"facilitation","score":0.640999972820282},{"id":"https://openalex.org/keywords/niche-processes","display_name":"niche processes","score":0.5910000205039978},{"id":"https://openalex.org/keywords/seasonal-variation","display_name":"seasonal variation","score":0.9269999861717224},{"id":"https://openalex.org/keywords/streptococcus-pneumoniae","display_name":"Streptococcus pneumoniae","score":0.871999979019165},{"id":"https://openalex.org/keywords/haemophilus-influenzae","display_name":"Haemophilus influenzae","score":0.9959999918937683},{"id":"https://openalex.org/keywords/moraxella-catarrhalis","display_name":"Moraxella catarrhalis","score":0.9760000109672546},{"id":"https://openalex.org/keywords/staphylococcus-aureus","display_name":"Staphylococcus aureus","score":0.9980000257492065},{"id":"https://openalex.org/keywords/pseudomonas-aeruginosa","display_name":"Pseudomonas aeruginosa","score":0.9909999966621399},{"id":"https://openalex.org/keywords/neisseria-meningitidis","display_name":"Neisseria meningitidis","score":1.0},{"id":"https://openalex.org/keywords/respiratory-syncytial-virus","display_name":"respiratory syncytial virus","score":0.9610000252723694},{"id":"https://openalex.org/keywords/influenza-virus","display_name":"influenza virus","score":0.7789999842643738},{"id":"https://openalex.org/keywords/rhinovirus","display_name":"rhinovirus","score":0.9380000233650208},{"id":"https://openalex.org/keywords/coronavirus","display_name":"coronavirus","score":0.621999979019165},{"id":"https://openalex.org/keywords/parainfluenza-virus","display_name":"parainfluenza virus","score":0.9309999942779541},{"id":"https://openalex.org/keywords/adenovirus","display_name":"adenovirus","score":0.9440000057220459}],"concepts":[{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.6896529197692871},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.6013236045837402},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5147655010223389},{"id":"https://openalex.org/C2779644171","wikidata":"https://www.wikidata.org/wiki/Q13400765","display_name":"Respiratory tract","level":3,"score":0.45515957474708557},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.45447665452957153},{"id":"https://openalex.org/C4590074","wikidata":"https://www.wikidata.org/wiki/Q5608096","display_name":"Community","level":3,"score":0.4303871989250183},{"id":"https://openalex.org/C2776012195","wikidata":"https://www.wikidata.org/wiki/Q754447","display_name":"Respiratory tract infections","level":3,"score":0.4225926101207733},{"id":"https://openalex.org/C142052008","wikidata":"https://www.wikidata.org/wiki/Q954027","display_name":"Cross-sectional study","level":2,"score":0.42159345746040344},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.35927921533584595},{"id":"https://openalex.org/C534529494","wikidata":"https://www.wikidata.org/wiki/Q7891","display_name":"Respiratory system","level":2,"score":0.2173750102519989},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.18643605709075928},{"id":"https://openalex.org/C110872660","wikidata":"https://www.wikidata.org/wiki/Q37813","display_name":"Ecosystem","level":2,"score":0.12603667378425598},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12356767058372498},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.05866619944572449},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000293","descriptor_name":"Adolescent","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000367","descriptor_name":"Age Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000368","descriptor_name":"Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000369","descriptor_name":"Aged, 80 and over","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D002353","descriptor_name":"Carrier State","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D002353","descriptor_name":"Carrier State","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D002353","descriptor_name":"Carrier State","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002675","descriptor_name":"Child, Preschool","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003430","descriptor_name":"Cross-Sectional Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007223","descriptor_name":"Infant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007231","descriptor_name":"Infant, Newborn","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008828","descriptor_name":"Microbiological Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009297","descriptor_name":"Nasal Mucosa","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D009297","descriptor_name":"Nasal Mucosa","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D012141","descriptor_name":"Respiratory Tract Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012141","descriptor_name":"Respiratory Tract Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D012141","descriptor_name":"Respiratory Tract Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D014777","descriptor_name":"Virus Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D014777","descriptor_name":"Virus Diseases","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055815","descriptor_name":"Young Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1099/jmm.0.000773","doi":"https://doi.org/10.1099/jmm.0.000773","is_oa":false,"landing_page_url":"https://doi.org/10.1099/jmm.0.000773","pdf_url":null,"source":{"id":"https://openalex.org/S154078021","display_name":"Journal of Medical Microbiology","issn_l":"0022-2615","issn":["0022-2615","1473-5644"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320497","host_organization_name":"Microbiology Society","host_organization_lineage":["https://openalex.org/P4310320497"],"host_organization_lineage_names":["Microbiology Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Medical Microbiology","raw_type":"journal-article"},{"id":"pmid:29927372","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29927372","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of medical microbiology","raw_type":"Journal Article"},{"id":"pmh:oai:eprints.soton.ac.uk:421069","doi":null,"is_oa":false,"landing_page_url":"https://eprints.soton.ac.uk/id/eprint/421069/1/20180510_Coughtrie_JMM_Notracking_Revised.docx","pdf_url":null,"source":{"id":"https://openalex.org/S4306401019","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/2e89a114-3c10-4271-b06f-0bcb4cc7feb4","doi":null,"is_oa":false,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/2e89a114-3c10-4271-b06f-0bcb4cc7feb4","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Coughtrie, A L, Morris, D, Anderson, R, Begum, N, Cleary, D, Faust, S, Jefferies, J M, Kraaijeveld, A, Moore, M V, Mullee, M, Roderick, P, Tuck, A, Whittaker, R N, Yuen, H M, Doncaster, C P & Clarke, S 2018, 'Ecology and diversity in upper respiratory tract microbial population structures from a cross-sectional community swabbing study', Journal of Medical Microbiology, vol. 67, pp. 1096-1108. https://doi.org/10.1099/jmm.0.000773","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/2e89a114-3c10-4271-b06f-0bcb4cc7feb4","doi":null,"is_oa":false,"landing_page_url":"https://birmingham.elsevierpure.com/en/publications/2e89a114-3c10-4271-b06f-0bcb4cc7feb4","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Coughtrie , A L , Morris , D , Anderson , R , Begum , N , Cleary , D , Faust , S , Jefferies , J M , Kraaijeveld , A , Moore , M V , Mullee , M , Roderick , P , Tuck , A , Whittaker , R N , Yuen , H M , Doncaster , C P & Clarke , S 2018 , ' Ecology and diversity in upper respiratory tract microbial population structures from a cross-sectional community swabbing study ' , Journal of Medical Microbiology , vol. 67 , pp. 1096-1108 . https://doi.org/10.1099/jmm.0.000773","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.9476000070571899}],"study_designs":[{"id":"https://openalex.org/study-designs/observational-study","display_name":"Observational Study"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1516901784","https://openalex.org/W1968488194","https://openalex.org/W1988485624","https://openalex.org/W1989889539","https://openalex.org/W1992264689","https://openalex.org/W1999399962","https://openalex.org/W2034690972","https://openalex.org/W2043100420","https://openalex.org/W2056947791","https://openalex.org/W2064176746","https://openalex.org/W2074769218","https://openalex.org/W2075378012","https://openalex.org/W2090760434","https://openalex.org/W2093931806","https://openalex.org/W2098441260","https://openalex.org/W2111737772","https://openalex.org/W2117383615","https://openalex.org/W2125065061","https://openalex.org/W2128397647","https://openalex.org/W2138196278","https://openalex.org/W2142503351","https://openalex.org/W2144677167","https://openalex.org/W2145135078","https://openalex.org/W2146914373","https://openalex.org/W2152716545","https://openalex.org/W2155376333","https://openalex.org/W2157583453","https://openalex.org/W2158418718","https://openalex.org/W2160844495","https://openalex.org/W2160969485","https://openalex.org/W2331709309","https://openalex.org/W4241350055"],"related_works":["https://openalex.org/W2572684027","https://openalex.org/W2096824128","https://openalex.org/W2025244812","https://openalex.org/W4387979813","https://openalex.org/W2903100843","https://openalex.org/W6959163750","https://openalex.org/W2161189417","https://openalex.org/W4413326897","https://openalex.org/W4413640500","https://openalex.org/W2907279316"],"abstract_inverted_index":{"Purpose.":[0],"Respiratory":[1],"tract":[2,220],"infections":[3],"(RTIs)":[4],"are":[5],"responsible":[6],"for":[7,29],"over":[8],"2.8":[9],"million":[10],"deaths":[11],"per":[12],"year":[13],"worldwide":[14],"with":[15,119,144,166],"pathobiont":[16],"carriage":[17,27,43],"a":[18,39,171],"required":[19],"precursor":[20],"to":[21,25,56,63,89,117,218],"infection.":[22],"We":[23],"sought":[24],"determine":[26],"epidemiology":[28],"both":[30],"bacterial":[31,72],"and":[32,61,84,96,103,109,123,142,182,201,215],"viral":[33],"respiratory":[34,90,206,219],"pathogens":[35],"as":[36],"part":[37],"of":[38,70,126,131,163,174,199,212],"large":[40],"population-based":[41],"cross-sectional":[42],"study.":[44],"Methodology.":[45],"Nose":[46],"self-swab":[47],"samples":[48,181,221],"were":[49,134,150,177],"collected":[50],"in":[51,87,137,155,179,188,205],"two":[52],"separate":[53],"time-points,":[54],"May":[55],"August":[57],"2012":[58],"(late":[59],"spring/summer)":[60],"February":[62],"April":[64],"2013":[65],"(winter/early":[66],"spring).":[67],"The":[68,210],"presence":[69,125,198],"six":[71],"species:":[73],"S.":[74,80],"pneumoniae,":[75],"H.":[76],"influenzae,":[77],"M.":[78],"catarrhalis,":[79],"aureus,":[81],"P.":[82],"aeruginosa":[83],"N.":[85],"meningitidis":[86],"addition":[88],"syncytial":[91],"virus,":[92],"influenza":[93],"viruses":[94,101],"A":[95],"B,":[97],"rhinovirus/enterovirus,":[98],"coronavirus,":[99],"parainfluenza":[100],"1\u20133":[102],"adenovirus":[104],"was":[105,115],"determined":[106],"using":[107],"culture":[108],"PCR":[110],"methods.":[111],"Results/Key":[112],"findings.":[113],"Carriage":[114],"shown":[116],"vary":[118],"age,":[120],"recent":[121,145],"RTI":[122],"the":[124,138,189,197,227],"other":[127],"species.":[128],"Spatial":[129],"structures":[130],"microbial":[132,231],"communities":[133],"more":[135],"disordered":[136],"0\u20134":[139],"age":[140],"group":[141],"those":[143],"RTI.":[146],"Species":[147],"frequency":[148],"distributions":[149],"flatter":[151],"than":[152],"random":[153],"expectation":[154],"young":[156],"individuals":[157,185,193],"(X2=20.42,":[158],"P=0.002),":[159],"indicating":[160],"spatial":[161],"clumping":[162],"species":[164],"consistent":[165],"facilitative":[167],"relationships.":[168],"Deviations":[169],"from":[170,183],"neutral":[172],"model":[173],"ecological":[175,216],"niches":[176],"observed":[178],"summer":[180],"older":[184],"but":[186],"not":[187],"winter":[190],"or":[191],"younger":[192],"(0\u20134":[194],"years),":[195],"suggesting":[196],"seasonal":[200],"age-dependent":[202],"niche":[203],"processes":[204],"community":[207,232],"assembly.":[208],"Conclusion.":[209],"application":[211],"epidemiological":[213],"methods":[214],"theory":[217],"has":[222],"yielded":[223],"novel":[224],"insights":[225],"into":[226],"factors":[228],"that":[229],"drive":[230],"composition.":[233]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4}],"updated_date":"2026-11-06T12:05:46.655746","created_date":"2018-06-29T00:00:00"}
