{"id":"https://openalex.org/W2805116653","doi":"https://doi.org/10.1186/s12284-018-0224-3","title":"Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions","display_name":"Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions","publication_year":2018,"publication_date":"2018-05-15","ids":{"openalex":"https://openalex.org/W2805116653","doi":"https://doi.org/10.1186/s12284-018-0224-3","mag":"2805116653","pmid":"https://pubmed.ncbi.nlm.nih.gov/29766351","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/5953909"},"language":"en","primary_location":{"id":"doi:10.1186/s12284-018-0224-3","doi":"https://doi.org/10.1186/s12284-018-0224-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12284-018-0224-3","pdf_url":"https://thericejournal.springeropen.com/counter/pdf/10.1186/s12284-018-0224-3","source":{"id":"https://openalex.org/S39864733","display_name":"Rice","issn_l":"1939-8425","issn":["1939-8425","1939-8433"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rice","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://thericejournal.springeropen.com/counter/pdf/10.1186/s12284-018-0224-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Naoki Yamamoto","orcid":"https://orcid.org/0000-0002-3136-5403","observed_orcids":["https://orcid.org/0000-0002-3136-5403"]},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":true,"raw_author_name":"Naoki Yamamoto","raw_affiliation_strings":["International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines. n.yamamoto@irri.org","International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines"],"raw_orcid":"https://orcid.org/0000-0002-3136-5403","affiliations":[{"raw_affiliation_string":"International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines. n.yamamoto@irri.org","institution_ids":["https://openalex.org/I162210093"]},{"raw_affiliation_string":"International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050572801","display_name":"Richard Garcia","orcid":"https://orcid.org/0000-0002-8311-0365","observed_orcids":["https://orcid.org/0000-0002-8311-0365"]},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Richard Garcia","raw_affiliation_strings":["International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005006572","display_name":"Tomohiro Suzuki","orcid":"https://orcid.org/0000-0002-2444-5288","observed_orcids":["https://orcid.org/0000-0002-2444-5288"]},"institutions":[{"id":"https://openalex.org/I207399273","display_name":"Utsunomiya University","ror":"https://ror.org/05bx1gz93","country_code":"JP","type":"education","lineage":["https://openalex.org/I207399273"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomohiro Suzuki","raw_affiliation_strings":["Utsunomiya University, 350 Mine-machi, Utsunomiya, Tochigi, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Utsunomiya University, 350 Mine-machi, Utsunomiya, Tochigi, Japan","institution_ids":["https://openalex.org/I207399273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044536036","display_name":"Celymar Angela Solis","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Celymar Angela Solis","raw_affiliation_strings":["International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082577599","display_name":"Yuichi Tada","orcid":"https://orcid.org/0000-0001-7093-1677","observed_orcids":["https://orcid.org/0000-0001-7093-1677"]},"institutions":[{"id":"https://openalex.org/I148798404","display_name":"Tokyo University of Technology","ror":"https://ror.org/021a26605","country_code":"JP","type":"education","lineage":["https://openalex.org/I148798404"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuichi Tada","raw_affiliation_strings":["Tokyo University of Technology, 1404-1 Katakura, Hachioji, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tokyo University of Technology, 1404-1 Katakura, Hachioji, Tokyo, Japan","institution_ids":["https://openalex.org/I148798404"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048264299","display_name":"Ramaiah Venuprasad","orcid":"https://orcid.org/0000-0002-0613-171X","observed_orcids":["https://orcid.org/0000-0002-0613-171X"]},"institutions":[{"id":"https://openalex.org/I90060838","display_name":"Africa Rice Center","ror":"https://ror.org/040y9br29","country_code":"CI","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I90060838"]}],"countries":["CI"],"is_corresponding":false,"raw_author_name":"Ramaiah Venuprasad","raw_affiliation_strings":["Africa Rice Center, 01 BP 4029, Abidjan 01, C\u00f4te d'Ivoire"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Africa Rice Center, 01 BP 4029, Abidjan 01, C\u00f4te d'Ivoire","institution_ids":["https://openalex.org/I90060838"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090774940","display_name":"Ajay Kohli","orcid":"https://orcid.org/0000-0002-7325-5798","observed_orcids":["https://orcid.org/0000-0002-7325-5798"]},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":true,"raw_author_name":"Ajay Kohli","raw_affiliation_strings":["International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines. a.kohli@irri.org","International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines. a.kohli@irri.org","institution_ids":["https://openalex.org/I162210093"]},{"raw_affiliation_string":"International Rice Research Institute, Los Ba\u00f1os, Laguna, Philippines","institution_ids":["https://openalex.org/I162210093"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5090774940"],"corresponding_institution_ids":["https://openalex.org/I162210093"],"apc_list":{"value":3090,"currency":"USD","value_usd":3090},"apc_paid":{"value":1442,"currency":"EUR","value_usd":1555},"fwci":1.0483,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.75227197,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"11","issue":"1","first_page":"33","last_page":"33"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.95169997215271,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.95169997215271,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12045","display_name":"Rice Cultivation and Yield Improvement","score":0.018799999728798866,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.010200000368058681,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nerica","display_name":"NERICA","score":0.9419999718666077},{"id":"https://openalex.org/keywords/upland-rice","display_name":"upland rice","score":0.7960000038146973},{"id":"https://openalex.org/keywords/interspecific-hybrid-rice","display_name":"interspecific hybrid rice","score":0.8220000267028809},{"id":"https://openalex.org/keywords/rice","display_name":"rice","score":0.9120000004768372},{"id":"https://openalex.org/keywords/oryza-glaberrima","display_name":"Oryza glaberrima","score":1.0},{"id":"https://openalex.org/keywords/breeding-history","display_name":"breeding history","score":0.7870000004768372},{"id":"https://openalex.org/keywords/genome-composition","display_name":"genome composition","score":0.7820000052452087},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphisms","display_name":"single nucleotide polymorphisms","score":0.8889999985694885},{"id":"https://openalex.org/keywords/indels","display_name":"indels","score":0.8180000185966492},{"id":"https://openalex.org/keywords/k-mer-analysis","display_name":"k-mer analysis","score":0.6759999990463257},{"id":"https://openalex.org/keywords/introgression","display_name":"introgression","score":0.890999972820282},{"id":"https://openalex.org/keywords/grain-shattering","display_name":"grain shattering","score":0.9039999842643738},{"id":"https://openalex.org/keywords/salt-tolerance","display_name":"salt tolerance","score":0.9900000095367432},{"id":"https://openalex.org/keywords/abiotic-stress-tolerance","display_name":"abiotic stress tolerance","score":0.7770000100135803},{"id":"https://openalex.org/keywords/pathogen-resistance","display_name":"pathogen resistance","score":0.8059999942779541},{"id":"https://openalex.org/keywords/food-security","display_name":"food security","score":0.4959999918937683}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7917149066925049},{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.6005624532699585},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5919793844223022},{"id":"https://openalex.org/C200830176","wikidata":"https://www.wikidata.org/wiki/Q3434007","display_name":"Upland rice","level":4,"score":0.4800066351890564},{"id":"https://openalex.org/C155015343","wikidata":"https://www.wikidata.org/wiki/Q788558","display_name":"Plant breeding","level":2,"score":0.4796874225139618},{"id":"https://openalex.org/C48189365","wikidata":"https://www.wikidata.org/wiki/Q42621","display_name":"Hybrid","level":2,"score":0.4740438461303711},{"id":"https://openalex.org/C2777923347","wikidata":"https://www.wikidata.org/wiki/Q690633","display_name":"Oryza","level":4,"score":0.44930699467658997},{"id":"https://openalex.org/C137580998","wikidata":"https://www.wikidata.org/wiki/Q235352","display_name":"Crop","level":2,"score":0.4312557578086853},{"id":"https://openalex.org/C143191323","wikidata":"https://www.wikidata.org/wiki/Q118406","display_name":"Ploidy","level":3,"score":0.4283347427845001},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3980245590209961},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.34230977296829224},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.26990121603012085}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/s12284-018-0224-3","doi":"https://doi.org/10.1186/s12284-018-0224-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12284-018-0224-3","pdf_url":"https://thericejournal.springeropen.com/counter/pdf/10.1186/s12284-018-0224-3","source":{"id":"https://openalex.org/S39864733","display_name":"Rice","issn_l":"1939-8425","issn":["1939-8425","1939-8433"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rice","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:4876206","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5953909","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5953909","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5953909","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rice (N Y)","raw_type":"Text"},{"id":"pmid:29766351","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29766351","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rice (New York, N.Y.)","raw_type":"Journal Article"},{"id":"pmh:oai:irdb.nii.ac.jp:00840:0004680827","doi":null,"is_oa":false,"landing_page_url":"https://uuair.repo.nii.ac.jp/records/12169","pdf_url":null,"source":{"id":"https://openalex.org/S7407056385","display_name":"Institutional Repositories DataBase (IRDB)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I184597095","host_organization_name":"National Institute of Informatics","host_organization_lineage":["https://openalex.org/I184597095"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rice","raw_type":"journal article"},{"id":"pmh:oai:doaj.org/article:26ad9a64de9e4e1980ec25989ce19e6e","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/26ad9a64de9e4e1980ec25989ce19e6e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Rice, Vol 11, Iss 1, Pp 1-16 (2018)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12284-018-0224-3","doi":"https://doi.org/10.1186/s12284-018-0224-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12284-018-0224-3","pdf_url":"https://thericejournal.springeropen.com/counter/pdf/10.1186/s12284-018-0224-3","source":{"id":"https://openalex.org/S39864733","display_name":"Rice","issn_l":"1939-8425","issn":["1939-8425","1939-8433"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rice","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":1.0,"display_name":"Zero hunger"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G111550247","display_name":null,"funder_award_id":"OPP1080832","funder_id":"https://openalex.org/F4320306137","funder_display_name":"Bill and Melinda Gates Foundation"}],"funders":[{"id":"https://openalex.org/F4320306137","display_name":"Bill and Melinda Gates Foundation","ror":"https://ror.org/0456r8d26"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2805116653.pdf","grobid_xml":"https://content.openalex.org/works/W2805116653.grobid-xml"},"referenced_works_count":93,"referenced_works":["https://openalex.org/W16599179","https://openalex.org/W293585512","https://openalex.org/W1411064714","https://openalex.org/W1586707225","https://openalex.org/W1591127601","https://openalex.org/W1779017450","https://openalex.org/W1819510125","https://openalex.org/W1837542470","https://openalex.org/W1919989127","https://openalex.org/W1964148439","https://openalex.org/W1966828218","https://openalex.org/W1968436325","https://openalex.org/W1968915079","https://openalex.org/W1970279759","https://openalex.org/W1980066896","https://openalex.org/W1986447587","https://openalex.org/W1998962436","https://openalex.org/W2001338440","https://openalex.org/W2004698878","https://openalex.org/W2006538155","https://openalex.org/W2012128982","https://openalex.org/W2019774336","https://openalex.org/W2021001918","https://openalex.org/W2024556021","https://openalex.org/W2027151726","https://openalex.org/W2027446674","https://openalex.org/W2029006394","https://openalex.org/W2032457672","https://openalex.org/W2041345883","https://openalex.org/W2042494796","https://openalex.org/W2043116503","https://openalex.org/W2043163880","https://openalex.org/W2047667092","https://openalex.org/W2049305106","https://openalex.org/W2049511141","https://openalex.org/W2049969992","https://openalex.org/W2054147431","https://openalex.org/W2055197800","https://openalex.org/W2056238823","https://openalex.org/W2059509235","https://openalex.org/W2063152067","https://openalex.org/W2065589216","https://openalex.org/W2066475079","https://openalex.org/W2071966376","https://openalex.org/W2076337403","https://openalex.org/W2077904952","https://openalex.org/W2089143816","https://openalex.org/W2094247015","https://openalex.org/W2103441770","https://openalex.org/W2103660916","https://openalex.org/W2103950435","https://openalex.org/W2104375019","https://openalex.org/W2105729200","https://openalex.org/W2105885841","https://openalex.org/W2108234281","https://openalex.org/W2109633310","https://openalex.org/W2113324199","https://openalex.org/W2113973441","https://openalex.org/W2115139506","https://openalex.org/W2119076547","https://openalex.org/W2119180969","https://openalex.org/W2119967660","https://openalex.org/W2125266506","https://openalex.org/W2125689310","https://openalex.org/W2129933858","https://openalex.org/W2131271579","https://openalex.org/W2131406651","https://openalex.org/W2132074759","https://openalex.org/W2132584329","https://openalex.org/W2134336144","https://openalex.org/W2134460396","https://openalex.org/W2135230723","https://openalex.org/W2137057349","https://openalex.org/W2138098955","https://openalex.org/W2138213161","https://openalex.org/W2141364352","https://openalex.org/W2150506261","https://openalex.org/W2158592738","https://openalex.org/W2159279060","https://openalex.org/W2161745371","https://openalex.org/W2163162361","https://openalex.org/W2171661952","https://openalex.org/W2177050380","https://openalex.org/W2200255921","https://openalex.org/W2235737683","https://openalex.org/W2274498290","https://openalex.org/W2288190517","https://openalex.org/W2327690851","https://openalex.org/W2343207374","https://openalex.org/W2422240721","https://openalex.org/W2611604995","https://openalex.org/W4242118851","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W6958088085","https://openalex.org/W6921110848","https://openalex.org/W6902221850","https://openalex.org/W2163162361","https://openalex.org/W1504616274","https://openalex.org/W2797450127","https://openalex.org/W2055197800","https://openalex.org/W7130511639","https://openalex.org/W2152953162","https://openalex.org/W2116265414"],"abstract_inverted_index":{"BACKGROUND:":[0],"Increasing":[1],"rice":[2,32,46,265],"demand":[3],"is":[4,85],"one":[5,35],"of":[6,9,15,36,56,79,94,168,209,233,243,261,282],"the":[7,10,16,43,59,76,80,105,121,148,166,169,175,195,237,253],"consequences":[8],"steadily":[11],"improving":[12],"socio-economic":[13],"status":[14],"African":[17,31,73],"countries.":[18],"New":[19],"Rice":[20],"for":[21,58,104,120,216,246,264,267,272],"Africa":[22,268],"(NERICA),":[23],"which":[24],"are":[25,34],"interspecific":[26,283],"hybrids":[27],"between":[28,147],"Asian":[29],"and":[30,67,101,103,110,133,142,162,190,229,248,275],"varieties,":[33],"successful":[37],"breeding":[38,196,281],"products":[39],"utilizing":[40],"biodiversity":[41],"across":[42],"two":[44],"different":[45],"crop":[47],"species.":[48],"Upland":[49],"NERICA":[50],"varieties":[51,84],"(NU)":[52],"exhibit":[53],"agronomic":[54,218],"traits":[55,81,219],"value":[57],"harsh":[60],"eco-geography,":[61],"including":[62,220],"shorter":[63],"duration,":[64],"higher":[65],"yield":[66],"stress":[68,250],"tolerance,":[69],"compared":[70],"to":[71,181,225],"local":[72,270],"varieties.":[74,255],"However,":[75],"molecular":[77,278],"basis":[78],"in":[82,174,206,252,280],"NU":[83,96,123,157,176,254,262],"largely":[86],"unknown.":[87],"RESULTS:":[88],"Whole":[89],"genome":[90],"re-sequencing":[91],"was":[92],"performed":[93],"four":[95,122,156],"lines":[97,158,177],"(3,":[98],"4,":[99],"5,":[100],"7)":[102],"parental":[106,149],"Oryza":[107,111],"sativa":[108],"WAB56-104":[109],"glaberrima":[112,203],"CG14.":[113],"The":[114,257],"k-mer":[115],"analysis":[116,153],"predicted":[117],"large":[118],"genomes":[119,263],"lines,":[124,150],"most":[125],"likely":[126],"inherited":[127],"from":[128,179,201],"WAB56-104.":[129],"Approximately":[130],"3.1,":[131],"0.10,":[132],"0.40":[134],"million":[135],"single":[136],"nucleotide":[137,140],"polymorphisms,":[138,141],"multi":[139],"short":[143],"insertions/deletions":[144],"were":[145,204],"mined":[146],"respectively.":[151],"Integrated":[152],"with":[154],"another":[155],"(1,":[159],"2,":[160],"8,":[161],"9)":[163],"showed":[164],"that":[165],"ratios":[167],"donor":[170],"CG14":[171],"allelic":[172],"sites":[173],"ranged":[178],"1.3":[180],"9.8%.":[182],"High":[183],"resolution":[184],"graphical":[185],"genotype":[186],"indicated":[187,241],"genome-level":[188],"similarities":[189],"common":[191],"genetic":[192],"events":[193,279],"during":[194],"process:":[197],"five":[198],"xyloglucan":[199],"fucosyltransferase":[200],"O.":[202],"introgressed":[205],"common.":[207],"Segregation":[208],"genic":[210],"segments":[211],"revealed":[212],"potential":[213],"causal":[214],"genes":[215,245],"some":[217],"grain":[221],"shattering,":[222],"awnness,":[223],"susceptibility":[224],"bacterial":[226],"leaf":[227],"bright,":[228],"salt":[230],"tolerance.":[231],"Analysis":[232],"unmapped":[234],"sequences":[235],"against":[236],"reference":[238],"cultivar":[239],"Nipponbare":[240],"existence":[242],"unique":[244],"pathogen":[247],"abiotic":[249],"resistance":[251],"CONCLUSIONS:":[256],"results":[258],"provide":[259],"understanding":[260],"improvement":[266],"reinforcing":[269],"capacity":[271],"food":[273],"security":[274],"insights":[276],"into":[277],"hybrid":[284],"crops.":[285]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2}],"updated_date":"2026-11-06T12:05:46.655746","created_date":"2018-06-13T00:00:00"}