{"id":"https://openalex.org/W2803056014","doi":"https://doi.org/10.1093/infdis/jiy240","title":"Identification of Novel Neisseria gonorrhoeae Lineages Harboring Resistance Plasmids in Coastal Kenya","display_name":"Identification of Novel Neisseria gonorrhoeae Lineages Harboring Resistance Plasmids in Coastal Kenya","publication_year":2018,"publication_date":"2018-04-20","ids":{"openalex":"https://openalex.org/W2803056014","doi":"https://doi.org/10.1093/infdis/jiy240","mag":"2803056014","pmid":"https://pubmed.ncbi.nlm.nih.gov/29701830","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6057544"},"language":"en","primary_location":{"id":"doi:10.1093/infdis/jiy240","doi":"https://doi.org/10.1093/infdis/jiy240","is_oa":true,"landing_page_url":"https://doi.org/10.1093/infdis/jiy240","pdf_url":"https://academic.oup.com/jid/article-pdf/218/5/801/25206956/jiy240.pdf","source":{"id":"https://openalex.org/S54542293","display_name":"The Journal of Infectious Diseases","issn_l":"0022-1899","issn":["0022-1899","1537-6613"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Infectious Diseases","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jid/article-pdf/218/5/801/25206956/jiy240.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073933760","display_name":"Ana Cehovin","orcid":"https://orcid.org/0000-0002-5809-122X","observed_orcids":["https://orcid.org/0000-0002-5809-122X"]},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ana Cehovin","raw_affiliation_strings":["Sir William Dunn School of Pathology, University of Oxford, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-5809-122X","affiliations":[{"raw_affiliation_string":"Sir William Dunn School of Pathology, University of Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039827143","display_name":"Odile Barbara Harrison","orcid":"https://orcid.org/0000-0002-1623-0295","observed_orcids":["https://orcid.org/0000-0002-1623-0295"]},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Odile B Harrison","raw_affiliation_strings":["Department of Zoology, University of Oxford, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Zoology, University of Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001271606","display_name":"Steven B. Lewis","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Steven B Lewis","raw_affiliation_strings":["Sir William Dunn School of Pathology, University of Oxford, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sir William Dunn School of Pathology, University of Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069167048","display_name":"Philip N. Ward","orcid":"https://orcid.org/0000-0003-2546-3426","observed_orcids":["https://orcid.org/0000-0003-2546-3426"]},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Philip N Ward","raw_affiliation_strings":["Sir William Dunn School of Pathology, University of Oxford, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sir William Dunn School of Pathology, University of Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065033590","display_name":"Caroline Ngetsa","orcid":"https://orcid.org/0000-0001-8827-7685","observed_orcids":["https://orcid.org/0000-0001-8827-7685"]},"institutions":[{"id":"https://openalex.org/I2841861","display_name":"Kenya Medical Research Institute","ror":"https://ror.org/04r1cxt79","country_code":"KE","type":"facility","lineage":["https://openalex.org/I2841861"]},{"id":"https://openalex.org/I4405267625","display_name":"KEMRI-Wellcome Trust Research Programme","ror":"https://ror.org/03my81p15","country_code":"KE","type":"facility","lineage":["https://openalex.org/I2841861","https://openalex.org/I40120149","https://openalex.org/I4405267625","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB","KE"],"is_corresponding":false,"raw_author_name":"Caroline Ngetsa","raw_affiliation_strings":["Kenya Medical Research Institute\u2013Wellcome Trust Research Programme, Kilifi, Kenya"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kenya Medical Research Institute\u2013Wellcome Trust Research Programme, Kilifi, Kenya","institution_ids":["https://openalex.org/I2841861","https://openalex.org/I4405267625","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063617127","display_name":"Susan Marie Graham","orcid":"https://orcid.org/0000-0001-7847-8686","observed_orcids":["https://orcid.org/0000-0001-7847-8686"]},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I2841861","display_name":"Kenya Medical Research Institute","ror":"https://ror.org/04r1cxt79","country_code":"KE","type":"facility","lineage":["https://openalex.org/I2841861"]},{"id":"https://openalex.org/I4405267625","display_name":"KEMRI-Wellcome Trust Research Programme","ror":"https://ror.org/03my81p15","country_code":"KE","type":"facility","lineage":["https://openalex.org/I2841861","https://openalex.org/I40120149","https://openalex.org/I4405267625","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB","KE","US"],"is_corresponding":false,"raw_author_name":"Susan M Graham","raw_affiliation_strings":["Kenya Medical Research Institute\u2013Wellcome Trust Research Programme, Kilifi, Kenya","University of Washington, Seattle"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kenya Medical Research Institute\u2013Wellcome Trust Research Programme, Kilifi, Kenya","institution_ids":["https://openalex.org/I2841861","https://openalex.org/I4405267625","https://openalex.org/I87048295"]},{"raw_affiliation_string":"University of Washington, Seattle","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042030913","display_name":"Eduard Joachim Sanders","orcid":"https://orcid.org/0000-0002-1062-8921","observed_orcids":["https://orcid.org/0000-0002-1062-8921"]},"institutions":[{"id":"https://openalex.org/I2841861","display_name":"Kenya Medical Research Institute","ror":"https://ror.org/04r1cxt79","country_code":"KE","type":"facility","lineage":["https://openalex.org/I2841861"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4405267625","display_name":"KEMRI-Wellcome Trust Research Programme","ror":"https://ror.org/03my81p15","country_code":"KE","type":"facility","lineage":["https://openalex.org/I2841861","https://openalex.org/I40120149","https://openalex.org/I4405267625","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["GB","KE","NL"],"is_corresponding":false,"raw_author_name":"Eduard J Sanders","raw_affiliation_strings":["Department of Global Health, University of Amsterdam, The Netherlands","Kenya Medical Research Institute\u2013Wellcome Trust Research Programme, Kilifi, Kenya","Nuffield Department of Medicine, University of Oxford, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Global Health, University of Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Kenya Medical Research Institute\u2013Wellcome Trust Research Programme, Kilifi, Kenya","institution_ids":["https://openalex.org/I2841861","https://openalex.org/I4405267625","https://openalex.org/I87048295"]},{"raw_affiliation_string":"Nuffield Department of Medicine, University of Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083239509","display_name":"Martin C. J. Maiden","orcid":"https://orcid.org/0000-0001-6321-5138","observed_orcids":["https://orcid.org/0000-0001-6321-5138","https://orcid.org/0000-0001-5337-6632"]},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin C J Maiden","raw_affiliation_strings":["Department of Zoology, University of Oxford, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Zoology, University of Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042781764","display_name":"Christoph M. Tang","orcid":"https://orcid.org/0000-0001-8366-3245","observed_orcids":["https://orcid.org/0000-0001-8366-3245"]},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Christoph M Tang","raw_affiliation_strings":["Sir William Dunn School of Pathology, University of Oxford, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sir William Dunn School of Pathology, University of Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5042781764"],"corresponding_institution_ids":["https://openalex.org/I40120149"],"apc_list":{"value":4763,"currency":"USD","value_usd":4763},"apc_paid":{"value":2619,"currency":"EUR","value_usd":2824},"fwci":3.113,"has_fulltext":true,"cited_by_count":60,"citation_normalized_percentile":{"value":0.91755725,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"218","issue":"5","first_page":"801","last_page":"808"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.701200008392334,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.701200008392334,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.2287999987602234,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.024000000208616257,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neisseria-gonorrhoeae","display_name":"Neisseria gonorrhoeae","score":1.0},{"id":"https://openalex.org/keywords/gonorrhea","display_name":"gonorrhea","score":0.9610000252723694},{"id":"https://openalex.org/keywords/antimicrobial-resistance","display_name":"antimicrobial resistance","score":0.9789999723434448},{"id":"https://openalex.org/keywords/plasmid-mediated-resistance","display_name":"plasmid-mediated resistance","score":0.9079999923706055},{"id":"https://openalex.org/keywords/doxycycline-resistance","display_name":"doxycycline resistance","score":0.7889999747276306},{"id":"https://openalex.org/keywords/tetracycline-resistance","display_name":"tetracycline resistance","score":0.9449999928474426},{"id":"https://openalex.org/keywords/penicillin-resistance","display_name":"penicillin resistance","score":0.9750000238418579},{"id":"https://openalex.org/keywords/men-who-have-sex-with-men","display_name":"men who have sex with men","score":0.9300000071525574},{"id":"https://openalex.org/keywords/reinfection","display_name":"reinfection","score":0.5720000267028809},{"id":"https://openalex.org/keywords/phylogenetic-lineages","display_name":"phylogenetic lineages","score":0.7269999980926514},{"id":"https://openalex.org/keywords/sexually-transmitted-infections","display_name":"sexually transmitted infections","score":0.6809999942779541},{"id":"https://openalex.org/keywords/kenya","display_name":"Kenya","score":0.4909999966621399}],"concepts":[{"id":"https://openalex.org/C2779166590","wikidata":"https://www.wikidata.org/wiki/Q131129","display_name":"Neisseria gonorrhoeae","level":2,"score":0.8256023526191711},{"id":"https://openalex.org/C2778082588","wikidata":"https://www.wikidata.org/wiki/Q101896","display_name":"Gonorrhea","level":3,"score":0.7876373529434204},{"id":"https://openalex.org/C22744801","wikidata":"https://www.wikidata.org/wiki/Q172778","display_name":"Plasmid","level":3,"score":0.7371529936790466},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6885682344436646},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.5686387419700623},{"id":"https://openalex.org/C94665300","wikidata":"https://www.wikidata.org/wiki/Q63391344","display_name":"Antibiotic resistance","level":3,"score":0.5423676371574402},{"id":"https://openalex.org/C2777179404","wikidata":"https://www.wikidata.org/wiki/Q422442","display_name":"Doxycycline","level":3,"score":0.5189208984375},{"id":"https://openalex.org/C2780923616","wikidata":"https://www.wikidata.org/wiki/Q193045","display_name":"Tetracycline","level":3,"score":0.5024130344390869},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.48115718364715576},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3331224024295807},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2702712416648865},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2691497802734375},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.21104088425636292},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000293","descriptor_name":"Adolescent","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D004363","descriptor_name":"Drug Utilization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006069","descriptor_name":"Gonorrhea","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D006069","descriptor_name":"Gonorrhea","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D006069","descriptor_name":"Gonorrhea","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007630","descriptor_name":"Kenya","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009344","descriptor_name":"Neisseria gonorrhoeae","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D009344","descriptor_name":"Neisseria gonorrhoeae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009344","descriptor_name":"Neisseria gonorrhoeae","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D015995","descriptor_name":"Prevalence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017720","descriptor_name":"Molecular Epidemiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055815","descriptor_name":"Young Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/infdis/jiy240","doi":"https://doi.org/10.1093/infdis/jiy240","is_oa":true,"landing_page_url":"https://doi.org/10.1093/infdis/jiy240","pdf_url":"https://academic.oup.com/jid/article-pdf/218/5/801/25206956/jiy240.pdf","source":{"id":"https://openalex.org/S54542293","display_name":"The Journal of Infectious Diseases","issn_l":"0022-1899","issn":["0022-1899","1537-6613"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Infectious Diseases","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:5013998","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6057544","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6057544","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6057544","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Infect Dis","raw_type":"Text"},{"id":"pmid:29701830","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29701830","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of infectious diseases","raw_type":"Journal Article"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:670200ae-9324-4756-a2ad-f011665b0eae","doi":null,"is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:670200ae-9324-4756-a2ad-f011665b0eae/files/m818f7fd0523058d3fb2051cf2f2fcef3","pdf_url":"https://ora.ox.ac.uk/objects/uuid:670200ae-9324-4756-a2ad-f011665b0eae/files/m818f7fd0523058d3fb2051cf2f2fcef3","source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Symplectic Elements at Oxford","raw_type":"Journal article"},{"id":"pmh:amcpub:oai:pure.amc.nl:publications/05c954c2-046d-478e-9d3e-6f81d101391d","doi":null,"is_oa":true,"landing_page_url":"https://pure.amc.nl/en/publications/identifcation-of-novel-neisseria-gonorrhoeae-lineages-harboring-resistance-plasmids-in-coastal-kenya(05c954c2-046d-478e-9d3e-6f81d101391d).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of infectious diseases, 218(5), 801 - 808. Oxford University Press","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.amsterdamumc.nl:openaire/7b5e4d8f-aad5-46a8-8110-9ba3d8d6f48d","doi":null,"is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/files/158135836/Identifcation-of-novel-neisseria-gonorrhoeae-lineages-harboring-resistance-plasmids-in-coastal-kenya.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cehovin, A, Harrison, O B, Lewis, S B, Ward, P N, Ngetsa, C, Graham, S M, Sanders, E J, Maiden, M C J & Tang, C M 2018, 'Identifcation of novel neisseria gonorrhoeae lineages harboring resistance plasmids in Coastal Kenya', Journal of infectious diseases, vol. 218, no. 5, pp. 801-808. https://doi.org/10.1093/infdis/jiy240","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/infdis/jiy240","doi":"https://doi.org/10.1093/infdis/jiy240","is_oa":true,"landing_page_url":"https://doi.org/10.1093/infdis/jiy240","pdf_url":"https://academic.oup.com/jid/article-pdf/218/5/801/25206956/jiy240.pdf","source":{"id":"https://openalex.org/S54542293","display_name":"The Journal of Infectious Diseases","issn_l":"0022-1899","issn":["0022-1899","1537-6613"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Infectious Diseases","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.9763000011444092,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[{"id":"https://openalex.org/study-designs/observational-study","display_name":"Observational Study"}],"awards":[{"id":"https://openalex.org/G1161615049","display_name":"Molecular mechanisms in complement regulation and evasion.","funder_award_id":"100298","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G5196605231","display_name":"Kenya KWTRP Major Overseas Programme","funder_award_id":"203077/Z/16/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G8043643059","display_name":"Core Support for the East African Major Overseas Programme","funder_award_id":"203077","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G8329432486","display_name":"Bacterial immune evasion.","funder_award_id":"102908/Z/13/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G9000151395","display_name":null,"funder_award_id":"100298/Z/13/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2803056014.pdf","grobid_xml":"https://content.openalex.org/works/W2803056014.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1614889471","https://openalex.org/W1900299093","https://openalex.org/W1929818717","https://openalex.org/W1943265824","https://openalex.org/W1977723400","https://openalex.org/W2066754037","https://openalex.org/W2088104349","https://openalex.org/W2094364696","https://openalex.org/W2095403873","https://openalex.org/W2114853012","https://openalex.org/W2128028738","https://openalex.org/W2151985322","https://openalex.org/W2152232384","https://openalex.org/W2153511071","https://openalex.org/W2155601859","https://openalex.org/W2315678042","https://openalex.org/W2463322101","https://openalex.org/W2464636199","https://openalex.org/W2488728930","https://openalex.org/W2514824283","https://openalex.org/W2580139289","https://openalex.org/W2636257200","https://openalex.org/W2725319213","https://openalex.org/W2740172058"],"related_works":["https://openalex.org/W3088384977","https://openalex.org/W4281829616","https://openalex.org/W3011708120","https://openalex.org/W7132830833","https://openalex.org/W4414895526","https://openalex.org/W7214593717","https://openalex.org/W2054455356","https://openalex.org/W4382725750","https://openalex.org/W4392927566","https://openalex.org/W4286110775"],"abstract_inverted_index":{"Background:":[0],"Africa":[1],"has":[2],"the":[3,9,55,132,173,191],"highest":[4],"incidence":[5],"of":[6,23,60,71,86,109,126,129,149,175,193],"gonorrhea":[7,130],"in":[8,18,105,131,152,158,195],"world.":[10],"However,":[11],"little":[12],"is":[13,163,198],"known":[14],"about":[15],"gonococcal":[16],"populations":[17],"this":[19],"continent":[20],"or":[21,144],"mechanisms":[22,59,192],"antimicrobial":[24],"resistance":[25],"(AMR).":[26],"Methods:":[27],"Whole-genome":[28],"sequence":[29],"data":[30],"were":[31,97,103,135],"analyzed":[32],"from":[33,38,48,92],"103":[34],"Neisseria":[35],"gonorrhoeae":[36],"isolates":[37,87,93],"73":[39],"patients,":[40],"mainly":[41],"men":[42],"who":[43],"have":[44,168],"sex":[45],"with":[46,68,78,115,156],"men,":[47],"coastal":[49],"Kenya.":[50],"We":[51,82],"annotated":[52],"loci,":[53],"defined":[54,58],"core":[56],"genome,":[57],"AMR,":[61],"and":[62,101,107,184],"performed":[63],"phylogenetic":[64],"analysis.":[65],"For":[66],"patients":[67],"multiple":[69,127],"episodes":[70,128],"gonorrhea,":[72],"we":[73],"determined":[74],"whether":[75],"infections":[76],"occurred":[77],"related":[79,139],"strains.":[80],"Results:":[81],"identified":[83],"3":[84],"clusters":[85],"that":[88,157],"are":[89],"phylogenetically":[90],"distinct":[91],"found":[94,104],"elsewhere.":[95],"Plasmids":[96],"virtually":[98],"ubiquitous:":[99],"pTetM":[100],"pblaTEM":[102],"97%,":[106],"55%":[108],"isolates,":[110],"respectively.":[111],"This":[112],"was":[113],"associated":[114],"high":[116],"doxycycline":[117],"use":[118],"for":[119,182],"undiagnosed":[120],"sexually":[121],"transmitted":[122],"infections.":[123],"Twenty-three":[124],"percent":[125],"same":[133],"individual":[134],"caused":[136],"by":[137],"a":[138,169],"strain,":[140],"suggesting":[141],"inadequate":[142],"treatment":[143,202],"reinfection.":[145],"Conclusions:":[146],"The":[147],"prevalence":[148],"plasmid-mediated":[150],"AMR":[151,162,194],"Kenyan":[153],"gonococci":[154],"contrasts":[155],"wealthy":[159],"countries,":[160],"where":[161],"largely":[164],"chromosomally":[165],"mediated.":[166],"Antimicrobials":[167],"profound":[170],"effect":[171],"on":[172],"maintenance":[174],"lineages":[176],"harboring":[177],"plasmids.":[178],"Doxycycline":[179],"can":[180],"select":[181],"tetracycline":[183],"penicillin":[185],"resistance,":[186],"through":[187],"plasmid":[188],"cooperation.":[189],"Understanding":[190],"high-risk":[196],"groups":[197],"required":[199],"to":[200],"inform":[201],"strategies.":[203]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1}],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2018-05-17T00:00:00"}
