{"id":"https://openalex.org/W2781908679","doi":"https://doi.org/10.2172/1377850","title":"User\u2019s Guide for Biodegradation Reactions in TMVOCBio","display_name":"User\u2019s Guide for Biodegradation Reactions in TMVOCBio","publication_year":2017,"publication_date":"2017-08-31","ids":{"openalex":"https://openalex.org/W2781908679","doi":"https://doi.org/10.2172/1377850","mag":"2781908679"},"language":"en","primary_location":{"id":"doi:10.2172/1377850","doi":"https://doi.org/10.2172/1377850","is_oa":false,"landing_page_url":"https://doi.org/10.2172/1377850","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)","raw_type":"report"},"volume":null,"type":"report","is_traditional":false,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.osti.gov/servlets/purl/1377850","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5147722939","display_name":"Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Environmental Energy Technologies Division","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)","raw_affiliation_strings":["Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103174830","display_name":"Yoojin Jung","orcid":"https://orcid.org/0000-0002-1148-3541","observed_orcids":["https://orcid.org/0000-0002-1148-3541"]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yoojin Jung","raw_affiliation_strings":["Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5148118671","display_name":"USDOE","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"USDOE","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5042353636","display_name":"Alfredo Battistelli","orcid":"https://orcid.org/0000-0001-6290-9859","observed_orcids":["https://orcid.org/0000-0001-6290-9859"]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alfredo Battistelli","raw_affiliation_strings":["Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10894","display_name":"Groundwater flow and contamination studies","score":0.6240000128746033,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10894","display_name":"Groundwater flow and contamination studies","score":0.6240000128746033,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10324","display_name":"Microbial bioremediation and biosurfactants","score":0.22689999639987946,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11801","display_name":"Reservoir Engineering and Simulation Methods","score":0.07909999787807465,"subfield":{"id":"https://openalex.org/subfields/2103","display_name":"Fuel Technology"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biodegradation-modeling","display_name":"biodegradation modeling","score":0.8370000123977661},{"id":"https://openalex.org/keywords/itough2","display_name":"iTOUGH2","score":0.9570000171661377},{"id":"https://openalex.org/keywords/monod-kinetics","display_name":"Monod kinetics","score":0.8159999847412109},{"id":"https://openalex.org/keywords/electron-acceptors","display_name":"electron acceptors","score":0.753000020980835},{"id":"https://openalex.org/keywords/microbial-population","display_name":"microbial population","score":0.7609999775886536},{"id":"https://openalex.org/keywords/substrate-uptake","display_name":"substrate uptake","score":0.5929999947547913},{"id":"https://openalex.org/keywords/competitive-inhibition","display_name":"competitive inhibition","score":0.7839999794960022},{"id":"https://openalex.org/keywords/non-competitive-inhibition","display_name":"non-competitive inhibition","score":0.9459999799728394},{"id":"https://openalex.org/keywords/temperature-dependence","display_name":"temperature dependence","score":0.7979999780654907},{"id":"https://openalex.org/keywords/moisture-dependence","display_name":"moisture dependence","score":0.9860000014305115},{"id":"https://openalex.org/keywords/contaminant-transport","display_name":"contaminant transport","score":0.4880000054836273},{"id":"https://openalex.org/keywords/groundwater-remediation","display_name":"groundwater remediation","score":0.41600000858306885}],"concepts":[{"id":"https://openalex.org/C157021035","wikidata":"https://www.wikidata.org/wiki/Q696715","display_name":"Biodegradation","level":2,"score":0.9347488880157471},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.7151778936386108},{"id":"https://openalex.org/C2777289219","wikidata":"https://www.wikidata.org/wiki/Q7632154","display_name":"Substrate (aquarium)","level":2,"score":0.6622215509414673},{"id":"https://openalex.org/C111163200","wikidata":"https://www.wikidata.org/wiki/Q904041","display_name":"Rate equation","level":3,"score":0.5110188722610474},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4853050112724304},{"id":"https://openalex.org/C115540264","wikidata":"https://www.wikidata.org/wiki/Q2945560","display_name":"Biomass (ecology)","level":2,"score":0.4731786549091339},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4731629490852356},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.4510785639286041},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.3711778223514557},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3372781276702881},{"id":"https://openalex.org/C87717796","wikidata":"https://www.wikidata.org/wiki/Q146326","display_name":"Environmental engineering","level":1,"score":0.33257222175598145},{"id":"https://openalex.org/C21880701","wikidata":"https://www.wikidata.org/wiki/Q2144042","display_name":"Process engineering","level":1,"score":0.3296447992324829},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.32641297578811646},{"id":"https://openalex.org/C148898269","wikidata":"https://www.wikidata.org/wiki/Q1108792","display_name":"Kinetics","level":2,"score":0.26460081338882446},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.2013075053691864},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1880398690700531},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.14974749088287354},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1340271234512329},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.10538572072982788},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10264503955841064},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.2172/1377850","doi":"https://doi.org/10.2172/1377850","is_oa":false,"landing_page_url":"https://doi.org/10.2172/1377850","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)","raw_type":"report"},{"id":"pmh:oai:osti.gov:1377850","doi":null,"is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1377850","pdf_url":"https://www.osti.gov/servlets/purl/1377850","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt8rs3b7st","doi":null,"is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/8rs3b7st","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:osti.gov:1377850","doi":null,"is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1377850","pdf_url":"https://www.osti.gov/servlets/purl/1377850","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1079818582","display_name":null,"funder_award_id":"AC02\u201005CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G1143651532","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G526230902","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7354628648","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320333674","display_name":"Earth Sciences Division","ror":"https://ror.org/045s99b94"},{"id":"https://openalex.org/F4320338292","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2781908679.pdf","grobid_xml":"https://content.openalex.org/works/W2781908679.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W72944609","https://openalex.org/W1663087287","https://openalex.org/W1974293275","https://openalex.org/W1995591190","https://openalex.org/W2002182668","https://openalex.org/W2005851635","https://openalex.org/W2016741669","https://openalex.org/W2079151551","https://openalex.org/W2138743959","https://openalex.org/W2139247256","https://openalex.org/W2144264495","https://openalex.org/W2144979077","https://openalex.org/W2153095777"],"related_works":["https://openalex.org/W2016741669","https://openalex.org/W2185941824","https://openalex.org/W72944609","https://openalex.org/W7029083482","https://openalex.org/W7197170462","https://openalex.org/W1975593347","https://openalex.org/W2092824472","https://openalex.org/W2129534516","https://openalex.org/W7001107984","https://openalex.org/W7096371130"],"abstract_inverted_index":{"TMVOCBio":[0],"is":[1,38,128,169,198],"an":[2],"extended":[3],"version":[4],"of":[5,14,59,74,166,192],"the":[6,12,41,60,72,84,106,111,124,131,139,143,182],"TMVOC":[7,43],"numerical":[8],"reservoir":[9],"simulator,":[10],"with":[11,201],"capability":[13],"simulating":[15],"multiple":[16,98],"biodegradation":[17,67,167,183,196],"reactions":[18,168,197],"mediated":[19],"by":[20,50,86,130],"different":[21,27,32],"microbial":[22],"populations":[23],"or":[24,90],"based":[25],"on":[26],"redox":[28],"reactions,":[29,68,184],"thus":[30],"involving":[31],"electron":[33,88],"acceptors.":[34],"This":[35,172],"modeling":[36,181,188],"feature":[37],"implemented":[39],"within":[40],"existing":[42],"module":[44],"in":[45],"iTOUGH2.":[46],"TMVOCBio,":[47],"originally":[48],"developed":[49],"Battistelli":[51],"(2003;":[52],"2004),":[53],"uses":[54],"a":[55,75,97,117],"general":[56],"modified":[57],"form":[58],"Monod":[61,99,119],"kinetic":[62,100],"rate":[63,101,127],"equation":[64],"to":[65],"simulate":[66],"which":[69,103,121],"effectively":[70],"simulates":[71],"uptake":[73,113,126],"substrate":[76,112,125],"while":[77],"accounting":[78],"for":[79,138,180,195],"various":[80],"limiting":[81,107,133,144],"factors":[82,108],"(i.e.,":[83],"limitation":[85],"substrate,":[87],"acceptor,":[89],"nutrients).":[91],"Two":[92],"approaches":[93],"are":[94,159],"included:":[95],"1)":[96],"equation,":[102],"assumes":[104,122],"all":[105],"simultaneously":[109],"affect":[110],"rate,":[114],"and":[115,155,163,177,185],"2)":[116],"minimum":[118],"model,":[120],"that":[123],"controlled":[129],"most":[132],"factor":[134],"among":[135],"those":[136],"acting":[137],"specific":[140],"substrate.":[141],"As":[142],"factors,":[145],"biomass":[146],"growth":[147],"inhibition,":[148],"toxicity":[149],"effects,":[150],"as":[151,153],"well":[152],"competitive":[154],"non-competitive":[156],"inhibition":[157],"effects":[158],"included.":[160],"The":[161],"temperature":[162],"moisture":[164],"dependence":[165],"also":[170],"considered.":[171],"report":[173],"provides":[174],"mathematical":[175],"formulations":[176],"assumptions":[178],"used":[179],"describes":[186],"additional":[187],"capabilities.":[189],"Detailed":[190],"description":[191],"input":[193],"format":[194],"presented":[199],"along":[200],"sample":[202],"problems.":[203]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2018-01-12T00:00:00"}