{"id":"https://openalex.org/W2776532474","doi":"https://doi.org/10.1186/s12864-017-4371-5","title":"Purification of nanogram-range immunoprecipitated DNA in ChIP-seq application","display_name":"Purification of nanogram-range immunoprecipitated DNA in ChIP-seq application","publication_year":2017,"publication_date":"2017-12-01","ids":{"openalex":"https://openalex.org/W2776532474","doi":"https://doi.org/10.1186/s12864-017-4371-5","mag":"2776532474","pmid":"https://pubmed.ncbi.nlm.nih.gov/29268714","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/5740926"},"language":"en","primary_location":{"id":"doi:10.1186/s12864-017-4371-5","doi":"https://doi.org/10.1186/s12864-017-4371-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-017-4371-5","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-017-4371-5","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-017-4371-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038742778","display_name":"Jian Zhong","orcid":"https://orcid.org/0000-0001-7157-603X","observed_orcids":["https://orcid.org/0000-0001-7157-603X"]},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jian Zhong","raw_affiliation_strings":["Epigenomics Development Laboratory, Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Epigenomics Development Laboratory, Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109394230","display_name":"Zhenqing Ye","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhenqing Ye","raw_affiliation_strings":["Division of Biomedical Statistics and Informatics, Department of Health Science Research, Mayo Clinic, Rochester, MN, 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Department of Health Science Research, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047137643","display_name":"Samuel W. Lenz","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel W. Lenz","raw_affiliation_strings":["Epigenomics Development Laboratory, Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Epigenomics Development Laboratory, Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080171205","display_name":"Chad R. Clark","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chad R. Clark","raw_affiliation_strings":["Epigenomics Development Laboratory, Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Epigenomics Development Laboratory, Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044470070","display_name":"Adil E. Bharucha","orcid":"https://orcid.org/0000-0002-7644-0390","observed_orcids":["https://orcid.org/0000-0002-7644-0390"]},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adil Bharucha","raw_affiliation_strings":["Division of Gastroenterology and Hepatology, Department of Medicine, Mayo Clinic, Rochester, MN, 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Gastroenterology and Hepatology, Department of Medicine, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079952114","display_name":"Gianrico Farrugia","orcid":"https://orcid.org/0000-0003-3473-5235","observed_orcids":["https://orcid.org/0000-0003-3473-5235"]},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gianrico Farrugia","raw_affiliation_strings":["Enteric Neuroscience Program, Mayo Clinic, Rochester, MN, 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Enteric Neuroscience Program, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077746203","display_name":"Keith D. Robertson","orcid":"https://orcid.org/0000-0002-7508-3328","observed_orcids":["https://orcid.org/0000-0002-7508-3328"]},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keith D. Robertson","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, 55905, USA","Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, MN, 55905, USA","Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100363356","display_name":"Zhiguo Zhang","orcid":"https://orcid.org/0000-0002-9451-2685","observed_orcids":["https://orcid.org/0000-0002-9451-2685"]},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiguo Zhang","raw_affiliation_strings":["Department of Pediatrics and Department of Genetics and Development, Institute for Cancer Genetics, Columbia University, New York, NY, 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics and Department of Genetics and Development, Institute for Cancer Genetics, Columbia University, New York, NY, 10032, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031123252","display_name":"Tam\u00e1s \u00d6rd\u00f6g","orcid":"https://orcid.org/0000-0002-3940-7284","observed_orcids":["https://orcid.org/0000-0002-3940-7284"]},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tamas Ordog","raw_affiliation_strings":["Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, 55905, USA","Division of Gastroenterology and Hepatology, Department of Medicine, Mayo Clinic, Rochester, MN, 55905, USA","Enteric Neuroscience Program, Mayo Clinic, Rochester, MN, 55905, USA","Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"Division of Gastroenterology and Hepatology, Department of Medicine, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"Enteric Neuroscience Program, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001374603","display_name":"Jeong\u2010Heon Lee","orcid":"https://orcid.org/0000-0003-4007-9166","observed_orcids":["https://orcid.org/0000-0003-4007-9166"]},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jeong-Heon Lee","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, 55905, USA. Lee.JeongHeon@mayo.edu","Epigenomics Development Laboratory, Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA. Lee.JeongHeon@mayo.edu","Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA. Lee.JeongHeon@mayo.edu","Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, 55905, USA"],"raw_orcid":"https://orcid.org/0000-0003-4007-9166","affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, 55905, USA. Lee.JeongHeon@mayo.edu","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"Epigenomics Development Laboratory, Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA. Lee.JeongHeon@mayo.edu","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"Epigenomics Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA. Lee.JeongHeon@mayo.edu","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001374603"],"corresponding_institution_ids":["https://openalex.org/I1330342723"],"apc_list":{"value":3090,"currency":"USD","value_usd":3090},"apc_paid":{"value":3090,"currency":"USD","value_usd":3090},"fwci":1.5239,"has_fulltext":true,"cited_by_count":55,"citation_normalized_percentile":{"value":0.8256595,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"18","issue":"1","first_page":"985","last_page":"985"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.8036999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.8036999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.07569999992847443,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.05979999899864197,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chip-seq","display_name":"ChIP-seq","score":0.9850000143051147},{"id":"https://openalex.org/keywords/dna-recovery","display_name":"DNA recovery","score":0.640999972820282},{"id":"https://openalex.org/keywords/polypropylene-pipes","display_name":"polypropylene pipes","score":0.6549999713897705},{"id":"https://openalex.org/keywords/protein-dna-interactions","display_name":"protein-DNA interactions","score":0.7730000019073486}],"concepts":[{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.680266797542572},{"id":"https://openalex.org/C134320426","wikidata":"https://www.wikidata.org/wiki/Q901026","display_name":"Chromatin immunoprecipitation","level":5,"score":0.6647704839706421},{"id":"https://openalex.org/C176619506","wikidata":"https://www.wikidata.org/wiki/Q5065899","display_name":"ChIP-sequencing","level":5,"score":0.6525686383247375},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6405074000358582},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5858080387115479},{"id":"https://openalex.org/C71829478","wikidata":"https://www.wikidata.org/wiki/Q901305","display_name":"Immunoprecipitation","level":3,"score":0.5663303136825562},{"id":"https://openalex.org/C191608507","wikidata":"https://www.wikidata.org/wiki/Q7815764","display_name":"ChIP-on-chip","level":5,"score":0.5418920516967773},{"id":"https://openalex.org/C78063203","wikidata":"https://www.wikidata.org/wiki/Q3062596","display_name":"DNA extraction","level":4,"score":0.4786844849586487},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.4651986062526703},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4600856304168701},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.4189513325691223},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.35809653997421265},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33319616317749023},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.22660642862319946},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.22228080034255981},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.15372106432914734},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14205071330070496},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08031439781188965},{"id":"https://openalex.org/C167227067","wikidata":"https://www.wikidata.org/wiki/Q5113739","display_name":"Chromatin remodeling","level":4,"score":0.07503682374954224},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D006367","descriptor_name":"HeLa Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007202","descriptor_name":"Indicators and Reagents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011309","descriptor_name":"Preservation, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12864-017-4371-5","doi":"https://doi.org/10.1186/s12864-017-4371-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-017-4371-5","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-017-4371-5","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:4664698","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5740926","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5740926","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5740926","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"Text"},{"id":"pmid:29268714","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29268714","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC genomics","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:029d36e793094dfa8c6688c1c165354c","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/029d36e793094dfa8c6688c1c165354c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Genomics, Vol 18, Iss 1, Pp 1-10 (2017)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12864-017-4371-5","doi":"https://doi.org/10.1186/s12864-017-4371-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-017-4371-5","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-017-4371-5","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G3916026800","display_name":"Interstitial cells of Cajal in diabetic gastropathy","funder_award_id":"R01DK058185","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G5989252822","display_name":"Pathobiology of the Enteric System","funder_award_id":"P01DK068055","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"}],"funders":[{"id":"https://openalex.org/F4320306143","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320333659","display_name":"Center for Individualized Medicine, Mayo Clinic","ror":"https://ror.org/03zzw1w08"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2776532474.pdf","grobid_xml":"https://content.openalex.org/works/W2776532474.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1967594143","https://openalex.org/W1989398942","https://openalex.org/W2006772779","https://openalex.org/W2007684630","https://openalex.org/W2015416439","https://openalex.org/W2021341670","https://openalex.org/W2056863613","https://openalex.org/W2063124224","https://openalex.org/W2070030982","https://openalex.org/W2090308810","https://openalex.org/W2092079649","https://openalex.org/W2092988184","https://openalex.org/W2103441770","https://openalex.org/W2117131162","https://openalex.org/W2124476261","https://openalex.org/W2146648681","https://openalex.org/W2154842246","https://openalex.org/W2171808845","https://openalex.org/W2399750072","https://openalex.org/W4298856955"],"related_works":["https://openalex.org/W6902317058","https://openalex.org/W6939879760","https://openalex.org/W6902271594","https://openalex.org/W6958456624","https://openalex.org/W6921164544","https://openalex.org/W6977483943","https://openalex.org/W6939734345","https://openalex.org/W2415271195","https://openalex.org/W6921265484","https://openalex.org/W6939560162"],"abstract_inverted_index":{"BACKGROUND:":[0],"Chromatin":[1],"immunoprecipitation-sequencing":[2],"(ChIP-seq)":[3],"is":[4,139,195],"a":[5,35,250,319],"widely":[6],"used":[7,83],"epigenetic":[8],"approach":[9,20],"for":[10,48,84,302,334],"investigating":[11],"genome-wide":[12],"protein-DNA":[13],"interactions":[14],"in":[15,94,163,180,237],"cells":[16],"and":[17,45,69,98,112,128,152,224,272,300],"tissues.":[18],"The":[19,167,209,259],"has":[21],"been":[22],"relatively":[23],"well":[24],"established":[25],"but":[26],"several":[27,117],"key":[28],"steps":[29],"still":[30],"require":[31],"further":[32],"improvement.":[33],"As":[34],"part":[36],"of":[37,59,67,81,87,91,133,146,160,176,192,205,216,231,241,256,305,308,318,321,331],"the":[38,65,79,85,131,188,203,229,245,254,266,277,303,322,329],"procedure,":[39],"immnoprecipitated":[40],"DNA":[41,61,93,107,119,127,138,144,149,162,177,182,194,211,218,222,291,299],"must":[42],"undergo":[43],"purification":[44,86,120,150,223,235,247,281,292],"library":[46,109,225,242,257],"preparation":[47,110,226],"subsequent":[49],"high-throughput":[50],"sequencing.":[51],"Current":[52],"ChIP":[53,95,126,137,164,298],"protocols":[54],"typically":[55],"yield":[56,169],"nanogram":[57,190],"quantities":[58],"immunoprecipitated":[60,92,210],"mainly":[62],"depending":[63,201],"on":[64,78,101,202,253,289],"target":[66],"interest":[68],"starting":[70],"chromatin":[71],"input":[72],"amount.":[73],"However,":[74],"little":[75],"information":[76],"exists":[77],"performance":[80,230,317],"reagents":[82,121,151,236,293],"such":[88],"minute":[89],"amounts":[90],"elution":[96,165],"buffer":[97],"their":[99],"effects":[100],"ChIP-seq":[102,113,238,261,332],"data.":[103],"Here,":[104],"we":[105],"compared":[106,143],"recovery,":[108],"efficiency,":[111],"results":[114,326],"obtained":[115],"with":[116,173,265],"commercial":[118,148,290],"applied":[122,294],"to":[123,157,197,213,221,227,295],"1":[124,156,174,214],"ng":[125,159,175,215],"also":[129,185],"investigated":[130],"impact":[132,252],"conditions":[134,307],"under":[135],"which":[136],"stored.":[140],"RESULTS:":[141],"We":[142,184,313],"recovery":[145,168],"ten":[147],"phenol/chloroform":[153],"extraction":[154],"from":[155,279],"50":[158],"immunopreciptated":[161,297],"buffer.":[166],"was":[170,219],"significantly":[171],"different":[172,280],"while":[178],"similar":[179],"higher":[181],"amounts.":[183],"observed":[186],"that":[187],"low":[189,309],"range":[191],"purified":[193,217,311],"prone":[196],"loss":[198],"during":[199],"storage":[200,306],"type":[204],"polypropylene":[206],"tube":[207],"used.":[208],"equivalent":[212],"subject":[220],"evaluate":[228],"four":[232],"better":[233],"performing":[234],"applications.":[239,336],"Quantification":[240],"DNAs":[243],"indicated":[244],"selected":[246],"kits":[248],"have":[249],"negligible":[251],"efficiency":[255],"preparation.":[258],"resulting":[260],"data":[262,278,288],"were":[263,273],"comparable":[264],"dataset":[267],"generated":[268],"by":[269],"ENCODE":[270],"consortium":[271],"highly":[274],"correlated":[275],"between":[276],"reagents.":[282,324],"CONCLUSIONS:":[283],"This":[284],"study":[285],"provides":[286],"comparative":[287],"nanogram-range":[296,310],"evidence":[301],"importance":[304],"DNA.":[312],"verified":[314],"consistent":[315],"high":[316],"subset":[320],"tested":[323],"These":[325],"will":[327],"facilitate":[328],"improvement":[330],"methodology":[333],"low-input":[335]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2018-01-05T00:00:00"}
