{"id":"https://openalex.org/W2773832192","doi":null,"title":"The Ech Hydrogenase is Important for Growth of D vulgaris with Hydrogen","display_name":"The Ech Hydrogenase is Important for Growth of D vulgaris with Hydrogen","publication_year":2007,"publication_date":"2007-02-12","ids":{"openalex":"https://openalex.org/W2773832192","mag":"2773832192"},"language":"en","primary_location":{"id":"pmh:oai:escholarship.org/ark:/13030/qt51k0d97h","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/51k0d97h","pdf_url":"https://escholarship.org/uc/item/51k0d97h","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},"volume":null,"type":"article","indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://escholarship.org/uc/item/51k0d97h","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057226838","display_name":"Sergey M. Stolyar","orcid":"https://orcid.org/0000-0003-4310-091X","observed_orcids":["https://orcid.org/0000-0003-4310-091X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sergey Stolyar","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029927615","display_name":"Judy D. Wall","orcid":"https://orcid.org/0000-0002-9152-5544","observed_orcids":["https://orcid.org/0000-0002-9152-5544"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Judy D. Wall","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-9152-5544","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5075204768","display_name":"David A. Stahl","orcid":"https://orcid.org/0000-0003-3051-841X","observed_orcids":["https://orcid.org/0000-0003-3051-841X","https://orcid.org/0000-0003-2782-1047"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David A. Stahl","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.30998644,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11626","display_name":"Metalloenzymes and iron-sulfur proteins","score":0.7583000063896179,"subfield":{"id":"https://openalex.org/subfields/1303","display_name":"Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11626","display_name":"Metalloenzymes and iron-sulfur proteins","score":0.7583000063896179,"subfield":{"id":"https://openalex.org/subfields/1303","display_name":"Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10284","display_name":"Anaerobic Digestion and Biogas Production","score":0.15870000422000885,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11231","display_name":"Microbial Fuel Cells and Bioremediation","score":0.022099999710917473,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/desulfovibrio-vulgaris","display_name":"Desulfovibrio vulgaris","score":0.9800000190734863},{"id":"https://openalex.org/keywords/european-chemicals-agency","display_name":"European Chemicals Agency","score":0.597000002861023},{"id":"https://openalex.org/keywords/energy-conservation","display_name":"energy conservation","score":0.8920000195503235},{"id":"https://openalex.org/keywords/desulfitobacterium","display_name":"Desulfitobacterium","score":0.5400000214576721},{"id":"https://openalex.org/keywords/desulfotomaculum","display_name":"Desulfotomaculum","score":0.6190000176429749},{"id":"https://openalex.org/keywords/methanogenic-archaea","display_name":"methanogenic archaea","score":0.453000009059906},{"id":"https://openalex.org/keywords/co-culture","display_name":"co-culture","score":0.5920000076293945},{"id":"https://openalex.org/keywords/acetate-metabolism","display_name":"acetate metabolism","score":0.5400000214576721},{"id":"https://openalex.org/keywords/lactate-metabolism","display_name":"lactate metabolism","score":0.7080000042915344},{"id":"https://openalex.org/keywords/sulfate-reduction","display_name":"sulfate reduction","score":0.7020000219345093},{"id":"https://openalex.org/keywords/hydrogenase-mutants","display_name":"hydrogenase mutants","score":0.5080000162124634},{"id":"https://openalex.org/keywords/deltaproteobacteria","display_name":"Deltaproteobacteria","score":0.6439999938011169}],"concepts":[{"id":"https://openalex.org/C2781243026","wikidata":"https://www.wikidata.org/wiki/Q593811","display_name":"Desulfovibrio vulgaris","level":3,"score":0.9883986711502075},{"id":"https://openalex.org/C201663137","wikidata":"https://www.wikidata.org/wiki/Q21198990","display_name":"Periplasmic space","level":4,"score":0.9106341600418091},{"id":"https://openalex.org/C79115784","wikidata":"https://www.wikidata.org/wiki/Q424135","display_name":"Hydrogenase","level":3,"score":0.8925506472587585},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5187740325927734},{"id":"https://openalex.org/C1124016","wikidata":"https://www.wikidata.org/wiki/Q864917","display_name":"Biohydrogen","level":4,"score":0.5184954404830933},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.49723055958747864},{"id":"https://openalex.org/C205458427","wikidata":"https://www.wikidata.org/wiki/Q206912","display_name":"Extremophile","level":4,"score":0.4302319884300232},{"id":"https://openalex.org/C202189072","wikidata":"https://www.wikidata.org/wiki/Q1929999","display_name":"Hydrogen production","level":3,"score":0.3397732675075531},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3137545883655548},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.3135213851928711},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2651216983795166},{"id":"https://openalex.org/C175605896","wikidata":"https://www.wikidata.org/wiki/Q39833","display_name":"Microorganism","level":3,"score":0.22635146975517273},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.22008943557739258},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.1232864260673523},{"id":"https://openalex.org/C161790260","wikidata":"https://www.wikidata.org/wiki/Q82264","display_name":"Catalysis","level":2,"score":0.08947905898094177}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:escholarship.org/ark:/13030/qt51k0d97h","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/51k0d97h","pdf_url":"https://escholarship.org/uc/item/51k0d97h","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:qt51k0d97h","doi":null,"is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/51k0d97h","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Stolyar, S.M.; Wall, J.; & Stahl, D.A.(2007). The Ech Hydrogenase is Important for Growth of D vulgaris with Hydrogen. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/51k0d97h","raw_type":"article"},{"id":"mag:2773832192","doi":null,"is_oa":false,"landing_page_url":"https://escholarship.org/content/qt51k0d97h/qt51k0d97h.pdf?t=p0fvuv","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:escholarship.org/ark:/13030/qt51k0d97h","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/51k0d97h","pdf_url":"https://escholarship.org/uc/item/51k0d97h","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1079818582","display_name":null,"funder_award_id":"AC02\u201005CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G1143651532","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1337544421","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G223002938","display_name":null,"funder_award_id":"DE-AC02 \u2212 05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G419881185","display_name":null,"funder_award_id":"DEAC02\u201305CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G42916606","display_name":null,"funder_award_id":"DE AC02 05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7354628648","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G7787287669","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320338292","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2773832192.pdf","grobid_xml":"https://content.openalex.org/works/W2773832192.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2772502030","https://openalex.org/W4298361153","https://openalex.org/W2780839049","https://openalex.org/W2008575230","https://openalex.org/W2163465287","https://openalex.org/W2120105895","https://openalex.org/W2777635863","https://openalex.org/W7097895795","https://openalex.org/W7097453215","https://openalex.org/W4235668194"],"abstract_inverted_index":{"One":[0],"objective":[1],"of":[2,36,56,86,98,111,138,154,171,176,224,311,315,329,385,391,402,408],"the":[3,13,22,39,74,84,118,127,152,155,219,259,270,280,294,316,323,330,349,360,377,382,386,400,421],"Virtual":[4],"Institute":[5],"for":[6,27,162,184,406,420],"Microbial":[7],"Stress":[8,15],"and":[9,12,24,29,47,67,126,133,144,192,202,221,243,245,253,255,277,308,333,345,374,427],"Survival":[10],"(VIMSS)":[11],"Environmental":[14,44],"Pathway":[16],"Project":[17],"(ESPP)":[18],"is":[19,79,105,131,213,389],"to":[20,38,81,151,279,322,348,399,411],"determine":[21],"genetic":[23],"physiological":[25],"basis":[26],"cooperative":[28,62],"competitive":[30],"interactions":[31,63],"among":[32],"environmental":[33],"microbial":[34],"populations":[35],"relevance":[37],"DOE.":[40],"The":[41,109,169],"ESPP":[42],"Applied":[43],"Core":[45,50],"(AEC)":[46],"Functional":[48],"Genomics":[49],"(FGC)":[51],"have":[52,197],"identified":[53],"a":[54,160,172,273,302,334],"number":[55],"genes":[57,183],"that":[58,129,381],"may":[59],"participate":[60],"in":[61,83,102,117,120,206,238,247,257,293,298,357,369,424],"between":[64],"sulfate":[65,71,145,244,394],"reducers":[66],"methanogens":[68],"under":[69,209,232],"low":[70],"conditions.":[72],"Specifically,":[73],"gram-negative":[75],"Deltaproteobacterium":[76],"D.":[77,103,139,177,207],"vulgaris":[78,104,140,178,208,229],"able":[80],"grow":[82],"absence":[85],"an":[87,225,265,309],"electron":[88,266],"acceptor":[89],"via":[90],"syntrophic":[91],"growth":[92,137,211,220,235,275,297,314,343,368],"with":[93,142,241,250,371],"hydrogenotrophic":[94,260,335],"organisms.":[95],"Despite":[96],"decades":[97],"research,":[99],"energy":[100,163,358],"conservation":[101,164],"not":[106,214],"well":[107,215],"understood.":[108,216],"presence":[110],"multiple":[112],"hydrogenases,":[113],"including":[114],"those":[115],"located":[116],"periplasm":[119],"all":[121],"studied":[122],"Desulfovibrio":[123],"strains":[124],"-":[125,149],"observation":[128],"hydrogen":[130,156,252,287,373,392],"produced":[132],"then":[134],"consumed":[135],"during":[136,296,393],"Miyazaki":[141],"lactate":[143,242],"(Tsuji":[146],"&Yagi,":[147],"1980)":[148],"lead":[150],"formulation":[153],"cycling":[157],"hypothesis":[158],"as":[159,288,416],"mechanism":[161],"(Odom":[165],"&":[166],"Peck,":[167],"1981).":[168],"availability":[170],"completed":[173],"genome":[174],"sequence":[175],"Hildenborough":[179],"has":[180],"since":[181],"revealed":[182],"at":[185],"least":[186],"six":[187],"different":[188,210,234],"hydrogenases:":[189],"four":[190],"periplasmic":[191],"two":[193],"cytoplasmic.":[194],"Although":[195,352],"several":[196],"been":[198],"partially":[199],"characterized":[200],"biochemically":[201],"genetically,":[203],"their":[204],"roles":[205],"conditions":[212],"We":[217],"examined":[218],"metabolite":[222],"production":[223,401],"echA":[226],"(DVU0434)":[227],"D":[228],"Hidenborough":[230],"mutant":[231,271,317,331],"three":[233],"conditions:":[236],"i)":[237],"medium":[239,248,303],"amended":[240,249],"ii)":[246],"acetate,":[251,372],"sulfate,":[254],"iii)":[256],"coculture":[258,327],"methanogen":[261,336],"M.":[262,425,428],"maripaludis,":[263],"lacking":[264],"acceptor.":[267],"On":[268],"lactate,":[269],"demonstrated":[272,339,419],"comparable":[274],"rate":[276,344],"yield":[278],"wild":[281,324,350],"type":[282],"strain,":[283],"but":[284],"evolved":[285],"more":[286,361],"measured":[289],"by":[290,413],"its":[291,365],"accumulation":[292],"headspace":[295],"batch":[299],"culture.":[300],"In":[301],"containing":[304],"5":[305],"mM":[306],"acetate":[307],"atmosphere":[310],"H2/CO2":[312],"(80:20),":[313],"was":[318,364,417],"severely":[319],"impaired":[320],"relative":[321,347],"type.":[325,351],"A":[326],"consisting":[328],"strain":[332],"(M.":[337],"maripaludis)":[338],"only":[340],"slightly":[341],"reduced":[342,403],"biomass":[346],"this":[353],"suggested":[354],"some":[355],"role":[356,384],"conservation,":[359],"obvious":[362],"phenotype":[363],"greatly":[366],"limited":[367],"monoculture":[370],"sulfate.":[375],"Thus,":[376],"available":[378],"data":[379],"suggest":[380],"primary":[383],"Ech":[387],"Hydrogenase":[388],"oxidation":[390],"respiration,":[395],"possibly":[396],"also":[397],"contributing":[398],"ferredoxin":[404],"required":[405],"conversion":[407],"Acetyl":[409],"CoA":[410],"pyruvate":[412,414],"oxidoreductase,":[415],"previously":[418],"homologous":[422],"hydrogenases":[423],"barkeri":[426],"maripaludis":[429],"(Meuer":[430],"et":[431,435],"al.,":[432,436],"2002;":[433],"Porat":[434],"2006).":[437]},"counts_by_year":[],"updated_date":"2026-09-26T08:19:03.415552","created_date":"2017-12-22T00:00:00"}