{"id":"https://openalex.org/W2772947753","doi":"https://doi.org/10.1111/jam.13657","title":"Molecular ecology of Listeria spp., Salmonella, Escherichia coli O157:H7 and non-O157 Shiga toxin-producing E. coli in pristine natural environments in Northern Colorado","display_name":"Molecular ecology of Listeria spp., Salmonella, Escherichia coli O157:H7 and non-O157 Shiga toxin-producing E. coli in pristine natural environments in Northern Colorado","publication_year":2017,"publication_date":"2017-12-07","ids":{"openalex":"https://openalex.org/W2772947753","doi":"https://doi.org/10.1111/jam.13657","mag":"2772947753","pmid":"https://pubmed.ncbi.nlm.nih.gov/29215770"},"language":"en","primary_location":{"id":"doi:10.1111/jam.13657","doi":"https://doi.org/10.1111/jam.13657","is_oa":false,"landing_page_url":"https://doi.org/10.1111/jam.13657","pdf_url":null,"source":{"id":"https://openalex.org/S39794811","display_name":"Journal of Applied Microbiology","issn_l":"1364-5072","issn":["1364-5072","1365-2672"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Applied Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021842123","display_name":"Christina A. Ahlstrom","orcid":"https://orcid.org/0000-0001-5414-8076","observed_orcids":["https://orcid.org/0000-0001-5414-8076"]},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C.A. Ahlstrom","raw_affiliation_strings":["Department of Animal Sciences; Colorado State University; Fort Collins CO USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences; Colorado State University; Fort Collins CO USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106025850","display_name":"Clyde S. Manuel","orcid":"https://orcid.org/0000-0001-6354-7992","observed_orcids":["https://orcid.org/0000-0001-6354-7992"]},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C.S. Manuel","raw_affiliation_strings":["Department of Animal Sciences; Colorado State University; Fort Collins CO USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences; Colorado State University; Fort Collins CO USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022805095","display_name":"Henk C. den Bakker","orcid":"https://orcid.org/0000-0002-4086-1580","observed_orcids":["https://orcid.org/0000-0002-4086-1580"]},"institutions":[{"id":"https://openalex.org/I12315562","display_name":"Texas Tech University","ror":"https://ror.org/0405mnx93","country_code":"US","type":"education","lineage":["https://openalex.org/I12315562"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H.C. Den Bakker","raw_affiliation_strings":["Center for Food Safety; University of Georgia; Griffins GA USA","Department of Animal and Food Sciences; Texas Tech University; Lubbock TX USA","Department of Food Science; Cornell University; Ithaca NY USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Food Safety; University of Georgia; Griffins GA USA","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Department of Animal and Food Sciences; Texas Tech University; Lubbock TX USA","institution_ids":["https://openalex.org/I12315562"]},{"raw_affiliation_string":"Department of Food Science; Cornell University; Ithaca NY USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082217142","display_name":"Martin Wiedmann","orcid":"https://orcid.org/0000-0002-4168-5662","observed_orcids":["https://orcid.org/0000-0002-4168-5662"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Wiedmann","raw_affiliation_strings":["Department of Food Science; Cornell University; Ithaca NY USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science; Cornell University; Ithaca NY USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081537609","display_name":"Kendra Kerr Nightingale","orcid":"https://orcid.org/0000-0001-8732-2587","observed_orcids":["https://orcid.org/0000-0001-8732-2587"]},"institutions":[{"id":"https://openalex.org/I12315562","display_name":"Texas Tech University","ror":"https://ror.org/0405mnx93","country_code":"US","type":"education","lineage":["https://openalex.org/I12315562"]},{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"K.K. Nightingale","raw_affiliation_strings":["Department of Animal Sciences; Colorado State University; Fort Collins CO USA","Department of Animal and Food Sciences; Texas Tech University; Lubbock TX USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences; Colorado State University; Fort Collins CO USA","institution_ids":["https://openalex.org/I92446798"]},{"raw_affiliation_string":"Department of Animal and Food Sciences; Texas Tech University; Lubbock TX USA","institution_ids":["https://openalex.org/I12315562"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5081537609"],"corresponding_institution_ids":["https://openalex.org/I12315562","https://openalex.org/I92446798"],"apc_list":{"value":2864,"currency":"GBP","value_usd":3777},"apc_paid":null,"fwci":0.4011,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.59956798,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"124","issue":"2","first_page":"511","last_page":"521"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10900","display_name":"Listeria monocytogenes in Food Safety","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10900","display_name":"Listeria monocytogenes in Food Safety","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11331","display_name":"Fecal contamination and water quality","score":0.01860000006854534,"subfield":{"id":"https://openalex.org/subfields/2312","display_name":"Water Science and Technology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.0038999998942017555,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/listeria-monocytogenes","display_name":"Listeria monocytogenes","score":0.906000018119812},{"id":"https://openalex.org/keywords/salmonella","display_name":"Salmonella","score":0.9449999928474426},{"id":"https://openalex.org/keywords/shiga-toxin-producing-escherichia-coli","display_name":"Shiga toxin-producing Escherichia coli","score":0.953000009059906},{"id":"https://openalex.org/keywords/non-o157-stec","display_name":"non-O157 STEC","score":0.8889999985694885},{"id":"https://openalex.org/keywords/escherichia-coli-o157-h7","display_name":"Escherichia coli O157:H7","score":0.953000009059906},{"id":"https://openalex.org/keywords/foodborne-pathogens","display_name":"foodborne pathogens","score":0.8889999985694885},{"id":"https://openalex.org/keywords/wilderness-areas","display_name":"wilderness areas","score":0.8109999895095825},{"id":"https://openalex.org/keywords/soil-and-water-contamination","display_name":"soil and water contamination","score":0.6110000014305115},{"id":"https://openalex.org/keywords/molecular-ecology","display_name":"molecular ecology","score":0.6150000095367432},{"id":"https://openalex.org/keywords/microbial-source-tracking","display_name":"microbial source tracking","score":0.9330000281333923},{"id":"https://openalex.org/keywords/northern-colorado","display_name":"northern Colorado","score":0.8119999766349792}],"concepts":[{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.7431561946868896},{"id":"https://openalex.org/C2781065037","wikidata":"https://www.wikidata.org/wiki/Q150839","display_name":"Salmonella","level":3,"score":0.6969450116157532},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.670487105846405},{"id":"https://openalex.org/C2778682378","wikidata":"https://www.wikidata.org/wiki/Q746209","display_name":"Listeria","level":4,"score":0.5881630182266235},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5614585280418396},{"id":"https://openalex.org/C2778411228","wikidata":"https://www.wikidata.org/wiki/Q424753","display_name":"Shiga toxin","level":4,"score":0.5281943082809448},{"id":"https://openalex.org/C2777367657","wikidata":"https://www.wikidata.org/wiki/Q184651","display_name":"Toxin","level":2,"score":0.4913703501224518},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.41896480321884155},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.3950997591018677},{"id":"https://openalex.org/C2781350384","wikidata":"https://www.wikidata.org/wiki/Q292015","display_name":"Listeria monocytogenes","level":3,"score":0.3520212173461914},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09406551718711853},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.058155566453933716}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003120","descriptor_name":"Colorado","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D008087","descriptor_name":"Listeria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D008087","descriptor_name":"Listeria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008087","descriptor_name":"Listeria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D012475","descriptor_name":"Salmonella","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012475","descriptor_name":"Salmonella","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012475","descriptor_name":"Salmonella","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D019453","descriptor_name":"Escherichia coli O157","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019453","descriptor_name":"Escherichia coli O157","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019453","descriptor_name":"Escherichia coli O157","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D054323","descriptor_name":"Shiga-Toxigenic Escherichia coli","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D054323","descriptor_name":"Shiga-Toxigenic Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054323","descriptor_name":"Shiga-Toxigenic Escherichia coli","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1111/jam.13657","doi":"https://doi.org/10.1111/jam.13657","is_oa":false,"landing_page_url":"https://doi.org/10.1111/jam.13657","pdf_url":null,"source":{"id":"https://openalex.org/S39794811","display_name":"Journal of Applied Microbiology","issn_l":"1364-5072","issn":["1364-5072","1365-2672"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Applied Microbiology","raw_type":"journal-article"},{"id":"pmid:29215770","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29215770","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of applied microbiology","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5683000087738037}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W142507464","https://openalex.org/W198207049","https://openalex.org/W1533958952","https://openalex.org/W1569553975","https://openalex.org/W1664932035","https://openalex.org/W1836633290","https://openalex.org/W1964541619","https://openalex.org/W1967620589","https://openalex.org/W1971677222","https://openalex.org/W1983207860","https://openalex.org/W1987704812","https://openalex.org/W1990543454","https://openalex.org/W1991381772","https://openalex.org/W2015090731","https://openalex.org/W2027325285","https://openalex.org/W2031176034","https://openalex.org/W2031719990","https://openalex.org/W2041100633","https://openalex.org/W2045795594","https://openalex.org/W2060990894","https://openalex.org/W2068836133","https://openalex.org/W2074762975","https://openalex.org/W2081121232","https://openalex.org/W2109448478","https://openalex.org/W2111531935","https://openalex.org/W2127514760","https://openalex.org/W2128591134","https://openalex.org/W2130291132","https://openalex.org/W2136913694","https://openalex.org/W2147611190","https://openalex.org/W2150753298","https://openalex.org/W2160308728","https://openalex.org/W2164695205","https://openalex.org/W2173867250","https://openalex.org/W2326889331","https://openalex.org/W4210821737"],"related_works":["https://openalex.org/W7081937309","https://openalex.org/W89422912","https://openalex.org/W2251897257","https://openalex.org/W4366086700","https://openalex.org/W7020601398","https://openalex.org/W4311590056","https://openalex.org/W4365815862","https://openalex.org/W2511942615","https://openalex.org/W3004829759","https://openalex.org/W6894189665"],"abstract_inverted_index":{"AIMS:":[0],"Molecular":[1],"subtyping":[2,282],"is":[3,15,220],"commonly":[4],"used":[5],"in":[6,26,56,175,179,229,239,249],"foodborne":[7,24,39,173,227,234,286],"disease":[8],"surveillance":[9],"and":[10,37,65,76,87,93,105,123,195,201,242,292],"microbial":[11,293],"source":[12,294],"tracking.":[13],"There":[14],"a":[16,68,144,157,168,191],"knowledge":[17],"gap":[18],"regarding":[19],"the":[20,62,139,148,197,206,223,246,266,271],"molecular":[21,224,281],"ecology":[22,225],"of":[23,31,171,209,226,280],"pathogens":[25,40,174,228,235],"non-food-associated":[27,285],"environments.":[28,232],"The":[29,278],"objective":[30],"this":[32,250],"study":[33],"was":[34,113,127,167,184],"to":[35,83,205],"isolate":[36,275],"subtype":[38,276],"from":[41,115,134,138,245,262],"pristine":[42,176,230],"natural":[43,177,231],"environments":[44,178],"with":[45,258],"minimal":[46],"anthropogenic":[47],"inputs.":[48],"MATERIALS":[49],"AND":[50,213],"RESULTS:":[51],"Five":[52],"locations":[53],"(wilderness":[54],"areas)":[55],"Northern":[57,180,198],"Colorado":[58,199],"were":[59,80,96,236],"sampled":[60],"during":[61,265],"spring,":[63],"summer":[64],"fall":[66],"over":[67,143],"2-year":[69],"period.":[70],"Soil,":[71],"water,":[72],"sediment,":[73],"surface":[74],"soil":[75],"wildlife":[77,240],"faecal":[78,135,241],"samples":[79,99,107,119,136,244],"microbiologically":[81],"analysed":[82],"detect":[84],"Listeria,":[85],"Salmonella":[86,112],"Shiga":[88],"toxin-producing":[89],"Escherichia":[90],"coli":[91,125],"(STEC),":[92],"resultant":[94],"isolates":[95,133,155,253,261,288],"subtyped.":[97],"Three":[98],"tested":[100],"positive":[101],"for":[102,273,284],"Listeria":[103,110],"monocytogenes":[104,132],"19":[106],"contained":[108,120],"other":[109,154],"spp.":[111],"isolated":[114,189],"two":[116],"samples,":[117],"five":[118],"non-O157":[121],"STEC,":[122],"E.":[124],"O157:H7":[126],"not":[128],"detected.":[129],"Two":[130],"L.":[131],"collected":[137],"same":[140,149,263,267],"wilderness":[141,193,247],"area":[142],"year":[145],"apart":[146],"shared":[147,254],"PFGE":[150],"pattern,":[151],"while":[152],"all":[153],"had":[156],"unique":[158],"type.":[159],"CONCLUSIONS:":[160],"Our":[161],"data":[162,283],"indicate":[163],"that":[164],"(i)":[165],"there":[166,183],"rare":[169],"presence":[170],"human":[172,259],"Colorado,":[181],"(ii)":[182],"genetic":[185],"diversity":[186],"between":[187],"organisms":[188],"within":[190],"given":[192],"area,":[194],"(iii)":[196],"climate":[200],"topography":[202],"may":[203],"contribute":[204],"low":[207],"occurrence":[208],"these":[210],"organisms.":[211],"SIGNIFICANCE":[212],"IMPACT":[214],"OF":[215],"THE":[216],"STUDY:":[217],"Relatively":[218],"little":[219],"known":[221],"about":[222],"While":[233],"rarely":[237],"detected":[238],"environmental":[243,274],"areas":[248],"study,":[251],"some":[252],"DNA":[255],"fingerprint":[256],"types":[257],"clinical":[260],"region":[264],"time":[268],"frame,":[269],"highlighting":[270],"need":[272],"data.":[277],"availability":[279],"pathogen":[287],"can":[289],"facilitate":[290],"epidemiological":[291],"tracking":[295],"investigations.":[296]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2017-12-22T00:00:00"}
