{"id":"https://openalex.org/W2767564657","doi":"https://doi.org/10.1371/journal.pone.0187595","title":"Simultaneous genome-wide gene expression and transcript isoform profiling in the human malaria parasite","display_name":"Simultaneous genome-wide gene expression and transcript isoform profiling in the human malaria parasite","publication_year":2017,"publication_date":"2017-11-07","ids":{"openalex":"https://openalex.org/W2767564657","doi":"https://doi.org/10.1371/journal.pone.0187595","mag":"2767564657","pmid":"https://pubmed.ncbi.nlm.nih.gov/29112986","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/5675406"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pone.0187595","doi":"https://doi.org/10.1371/journal.pone.0187595","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0187595","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0187595&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS ONE","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0187595&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015072968","display_name":"Lindsey B. Turnbull","orcid":"https://orcid.org/0000-0002-5192-8867","observed_orcids":["https://orcid.org/0000-0002-5192-8867"]},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]},{"id":"https://openalex.org/I4388446366","display_name":"Indiana University Indianapolis","ror":"https://ror.org/03eftgw80","country_code":"US","type":"education","lineage":["https://openalex.org/I4388446366","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lindsey B. Turnbull","raw_affiliation_strings":["Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America","Ryan White Center for Pediatric Infectious Diseases and Global Health, Indiana University, Indianapolis, Indiana, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-5192-8867","affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America","institution_ids":["https://openalex.org/I107639228"]},{"raw_affiliation_string":"Ryan White Center for Pediatric Infectious Diseases and Global Health, Indiana University, Indianapolis, Indiana, United States of America","institution_ids":["https://openalex.org/I4388446366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081185204","display_name":"Geoffrey Siwo","orcid":"https://orcid.org/0000-0003-0726-997X","observed_orcids":["https://orcid.org/0000-0003-0726-997X"]},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]},{"id":"https://openalex.org/I4210162937","display_name":"IBM Research - Africa","ror":"https://ror.org/05c0m9m16","country_code":"ZA","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210162937"]}],"countries":["US","ZA"],"is_corresponding":false,"raw_author_name":"Geoffrey H. Siwo","raw_affiliation_strings":["Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America","IBM Research Africa, Johannesburg, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America","institution_ids":["https://openalex.org/I107639228"]},{"raw_affiliation_string":"IBM Research Africa, Johannesburg, South Africa","institution_ids":["https://openalex.org/I4210162937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007795787","display_name":"Katrina A. Button-Simons","orcid":"https://orcid.org/0000-0001-5248-7939","observed_orcids":["https://orcid.org/0000-0001-5248-7939"]},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katrina A. Button-Simons","raw_affiliation_strings":["Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111684248","display_name":"Asako Tan","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]},{"id":"https://openalex.org/I178645029","display_name":"Illumina (United States)","ror":"https://ror.org/05k34t975","country_code":"US","type":"company","lineage":["https://openalex.org/I178645029"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Asako Tan","raw_affiliation_strings":["Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America","Illumina, Madison, Wisconsin, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America","institution_ids":["https://openalex.org/I107639228"]},{"raw_affiliation_string":"Illumina, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I178645029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007738061","display_name":"Lisa A. Checkley","orcid":"https://orcid.org/0000-0003-2442-0301","observed_orcids":["https://orcid.org/0000-0003-2442-0301"]},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lisa A. Checkley","raw_affiliation_strings":["Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052238251","display_name":"Heather J. Painter","orcid":"https://orcid.org/0000-0003-0264-4689","observed_orcids":["https://orcid.org/0000-0003-0264-4689"]},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Heather J. Painter","raw_affiliation_strings":["Department of Biochemistry & Molecular Biology and Center for Malaria Research, Pennsylvania State University, University Park, Pennsylvania, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry & Molecular Biology and Center for Malaria Research, Pennsylvania State University, University Park, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027004504","display_name":"Manuel Llin\u00e1s","orcid":"https://orcid.org/0000-0002-6173-5882","observed_orcids":["https://orcid.org/0000-0002-6173-5882"]},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manuel Llin\u00e1s","raw_affiliation_strings":["Department of Biochemistry & Molecular Biology and Center for Malaria Research, Pennsylvania State University, University Park, Pennsylvania, United States of America","Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry & Molecular Biology and Center for Malaria Research, Pennsylvania State University, University Park, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072425194","display_name":"Michael T. Ferdig","orcid":"https://orcid.org/0000-0003-3516-9829","observed_orcids":["https://orcid.org/0000-0003-3516-9829"]},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Michael T. Ferdig","raw_affiliation_strings":["Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, United States of America","institution_ids":["https://openalex.org/I107639228"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5072425194"],"corresponding_institution_ids":["https://openalex.org/I107639228"],"apc_list":{"value":2382,"currency":"USD","value_usd":2382},"apc_paid":{"value":2382,"currency":"USD","value_usd":2382},"fwci":0.6816,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.63397285,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"12","issue":"11","first_page":"e0187595","last_page":"e0187595"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.3086000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.3086000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10091","display_name":"Malaria Research and Control","score":0.2919999957084656,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.2833999991416931,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plasmodium-falciparum","display_name":"Plasmodium falciparum","score":0.9950000047683716},{"id":"https://openalex.org/keywords/gene-expression-microarrays","display_name":"gene expression microarrays","score":0.8960000276565552},{"id":"https://openalex.org/keywords/transcript-isoforms","display_name":"mRNA isoforms","score":0.8859999775886536},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"alternative splicing","score":0.9940000176429749},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"non-coding RNA","score":0.9430000185966492},{"id":"https://openalex.org/keywords/probe-design","display_name":"probe design","score":0.5180000066757202},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"gene expression profiling","score":0.5860000252723694},{"id":"https://openalex.org/keywords/drug-resistance","display_name":"drug resistance","score":0.5170000195503235}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7672758102416992},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.719103217124939},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.6688722372055054},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.6210256814956665},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.58176189661026},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5807979106903076},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.580167829990387},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5065897703170776},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.4883100986480713},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.46455949544906616},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4623478651046753},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.45264390110969543},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.4518031179904938},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.41340363025665283},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.29277437925338745}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010961","descriptor_name":"Plasmodium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pone.0187595","doi":"https://doi.org/10.1371/journal.pone.0187595","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0187595","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0187595&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS ONE","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:4604242","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5675406","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:29112986","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29112986","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PloS one","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5675406","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC5675406/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS One","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:cd84398e913743f695b58f5cad178174","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/cd84398e913743f695b58f5cad178174","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS ONE, Vol 12, Iss 11, p e0187595 (2017)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/5578522","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Simultaneous_genome-wide_gene_expression_and_transcript_isoform_profiling_in_the_human_malaria_parasite/5578522","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pone.0187595","doi":"https://doi.org/10.1371/journal.pone.0187595","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0187595","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0187595&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS ONE","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1218922180","display_name":null,"funder_award_id":"UL1TR001108","funder_id":"https://openalex.org/F4320309408","funder_display_name":"Indiana Clinical and Translational Sciences Institute"},{"id":"https://openalex.org/G2560545833","display_name":"Indiana Clinical and Translational Sciences Institute","funder_award_id":"UL1TR001108","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5540675218","display_name":"A network-based method for predicting gene interactions in artemisinin resistance","funder_award_id":"R21AI111286","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G7483086961","display_name":"Center for Quantitative Biology","funder_award_id":"P50GM071508","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320309408","display_name":"Indiana Clinical and Translational Sciences Institute","ror":"https://ror.org/022t7q367"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320333313","display_name":"Eck Institute for Global Health, University of Notre Dame","ror":null},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2767564657.pdf","grobid_xml":"https://content.openalex.org/works/W2767564657.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1506013368","https://openalex.org/W1695894247","https://openalex.org/W1967888162","https://openalex.org/W1969503178","https://openalex.org/W1978455510","https://openalex.org/W1981382039","https://openalex.org/W1983405312","https://openalex.org/W1983724086","https://openalex.org/W1997014235","https://openalex.org/W2001990291","https://openalex.org/W2004589024","https://openalex.org/W2008756713","https://openalex.org/W2009715792","https://openalex.org/W2010637767","https://openalex.org/W2010874410","https://openalex.org/W2019851585","https://openalex.org/W2023160008","https://openalex.org/W2028655147","https://openalex.org/W2034126777","https://openalex.org/W2037993016","https://openalex.org/W2064299429","https://openalex.org/W2064792211","https://openalex.org/W2068065844","https://openalex.org/W2074955506","https://openalex.org/W2083280521","https://openalex.org/W2084547321","https://openalex.org/W2092645079","https://openalex.org/W2096496718","https://openalex.org/W2099468911","https://openalex.org/W2101851382","https://openalex.org/W2112022492","https://openalex.org/W2112047656","https://openalex.org/W2117949279","https://openalex.org/W2118028633","https://openalex.org/W2119884047","https://openalex.org/W2123106337","https://openalex.org/W2126234565","https://openalex.org/W2129523542","https://openalex.org/W2129766801","https://openalex.org/W2130410032","https://openalex.org/W2132285289","https://openalex.org/W2135558828","https://openalex.org/W2144958373","https://openalex.org/W2151513786","https://openalex.org/W2159420567","https://openalex.org/W2161106528","https://openalex.org/W2163443861","https://openalex.org/W2164365774","https://openalex.org/W2168635033","https://openalex.org/W2170989872","https://openalex.org/W2182240747","https://openalex.org/W2399991609","https://openalex.org/W2409442395","https://openalex.org/W2493617648","https://openalex.org/W4300907844","https://openalex.org/W6722970668","https://openalex.org/W7074031656"],"related_works":["https://openalex.org/W2493617648","https://openalex.org/W2126234565","https://openalex.org/W2112022492","https://openalex.org/W2164365774","https://openalex.org/W2409442395","https://openalex.org/W2132285289","https://openalex.org/W2151513786","https://openalex.org/W4242088720","https://openalex.org/W2071524757","https://openalex.org/W2108509495"],"abstract_inverted_index":{"Gene":[0,188],"expression":[1,38,97,189,205],"DNA":[2],"microarrays":[3,190],"have":[4],"been":[5],"vital":[6],"for":[7,40,199,234],"characterizing":[8],"whole-genome":[9],"transcriptional":[10],"profiles.":[11],"Nevertheless,":[12],"their":[13,220],"effectiveness":[14],"relies":[15],"heavily":[16],"on":[17,47],"the":[18,23,29,41,58,77,160,174,178,200,223,240,243,249],"accuracy":[19],"of":[20,25,32,50,61,79,106,203,226,230,242,245,251],"genome":[21],"sequences,":[22],"annotation":[24],"gene":[26,37,96,204,246],"structures,":[27],"and":[28,71,108,143,146,206,222],"sequence-dependent":[30,124],"performance":[31],"individual":[33],"probes.":[34],"Currently":[35],"available":[36,141],"arrays":[39,98,132,142],"malaria":[42],"parasite":[43],"Plasmodium":[44],"falciparum":[45],"rely":[46],"an":[48,104],"average":[49,105],"2":[51],"probes":[52,101,110],"per":[53],"gene,":[54],"usually":[55],"positioned":[56],"near":[57],"3'":[59],"end":[60],"genes;":[62],"consequently,":[63],"existing":[64],"designs":[65],"are":[66,171,232],"prone":[67],"to":[68,139,192,197,219],"measurement":[69],"bias":[70],"cannot":[72],"capture":[73],"complexities":[74],"such":[75],"as":[76,153,155],"occurrence":[78],"transcript":[80,151],"isoforms":[81,152],"arising":[82],"from":[83,166],"alternative":[84,87,196,207],"splicing":[85,164,186,208],"or":[86],"start/":[88],"stop":[89],"sites.":[90],"Here,":[91],"we":[92],"describe":[93],"two":[94],"novel":[95],"with":[99,103],"exon-focused":[100],"designed":[102],"12":[107],"20":[109],"spanning":[111],"each":[112],"gene.":[113],"This":[114],"high":[115],"probe":[116],"density":[117],"minimizes":[118],"signal":[119],"noise":[120],"inherent":[121],"in":[122,215,248],"probe-to-probe":[123],"hybridization":[125],"intensity.":[126],"We":[127],"demonstrate":[128],"that":[129],"these":[130],"exon":[131,175,179],"accurately":[133],"profile":[134],"genome-wide":[135],"expression,":[136],"comparing":[137],"favorably":[138],"currently":[140],"RNA-seq":[144,168,198],"profiling,":[145],"can":[147],"detect":[148],"alternatively":[149],"spliced":[150],"well":[154],"non-coding":[156],"RNAs":[157],"(ncRNAs).":[158],"Of":[159],"964":[161],"candidate":[162],"alternate":[163,185],"events":[165],"published":[167],"studies,":[169],"162":[170],"confirmed":[172],"using":[173],"array.":[176],"Furthermore,":[177],"array":[180],"predicted":[181],"330":[182],"previously":[183],"unidentified":[184],"events.":[187,209],"continue":[191],"offer":[193],"a":[194],"cost-effective":[195],"simultaneous":[201],"monitoring":[202,241],"Microarrays":[210],"may":[211],"even":[212],"be":[213],"preferred":[214],"some":[216],"cases":[217],"due":[218],"affordability":[221],"rapid":[224],"turn-around":[225],"results":[227],"when":[228],"hundreds":[229],"samples":[231],"required":[233],"fine-scale":[235],"systems":[236],"biology":[237],"investigations,":[238],"including":[239],"networks":[244],"co-expression":[247],"emergence":[250],"drug":[252],"resistance.":[253]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2018,"cited_by_count":1}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2017-11-17T00:00:00"}
