{"id":"https://openalex.org/W2761565657","doi":"https://doi.org/10.5061/dryad.52v62","title":"Data from: Primers for Castilleja and their utility across Orobanchaceae: II. Single-copy nuclear loci","display_name":"Data from: Primers for Castilleja and their utility across Orobanchaceae: II. Single-copy nuclear loci","publication_year":2017,"publication_date":"2017-06-08","ids":{"openalex":"https://openalex.org/W2761565657","doi":"https://doi.org/10.5061/dryad.52v62","mag":"2761565657"},"language":"en","primary_location":{"id":"pmh:oai:easy.dans.knaw.nl:easy-dataset:97798","doi":null,"is_oa":false,"landing_page_url":"https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:97798","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"volume":null,"type":"article","is_traditional":true,"indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/4998977","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047973003","display_name":"Maribeth Latvis","orcid":"https://orcid.org/0000-0003-2496-7753","observed_orcids":["https://orcid.org/0000-0003-2496-7753"]},"institutions":[{"id":"https://openalex.org/I177156846","display_name":"South Dakota State University","ror":"https://ror.org/015jmes13","country_code":"US","type":"education","lineage":["https://openalex.org/I177156846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Latvis, Maribeth","raw_affiliation_strings":["South Dakota State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"South Dakota State University","institution_ids":["https://openalex.org/I177156846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071872990","display_name":"Sarah J. Jacobs","orcid":"https://orcid.org/0000-0002-3125-6266","observed_orcids":["https://orcid.org/0000-0002-3125-6266"]},"institutions":[{"id":"https://openalex.org/I155093810","display_name":"University of Idaho","ror":"https://ror.org/03hbp5t65","country_code":"US","type":"education","lineage":["https://openalex.org/I155093810"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacobs, Sarah J.","raw_affiliation_strings":["University of Idaho"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Idaho","institution_ids":["https://openalex.org/I155093810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074612677","display_name":"Sebastian M. E. Mortimer","orcid":"https://orcid.org/0000-0001-9984-9917","observed_orcids":["https://orcid.org/0000-0001-9984-9917"]},"institutions":[{"id":"https://openalex.org/I155093810","display_name":"University of Idaho","ror":"https://ror.org/03hbp5t65","country_code":"US","type":"education","lineage":["https://openalex.org/I155093810"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mortimer, Sebastian M. E.","raw_affiliation_strings":["University of Idaho"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Idaho","institution_ids":["https://openalex.org/I155093810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103581831","display_name":"Melissa Richards","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I155093810","display_name":"University of Idaho","ror":"https://ror.org/03hbp5t65","country_code":"US","type":"education","lineage":["https://openalex.org/I155093810"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richards, Melissa","raw_affiliation_strings":["University of Idaho"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Idaho","institution_ids":["https://openalex.org/I155093810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018942257","display_name":"Paul D. Blischak","orcid":"https://orcid.org/0000-0001-9177-8958","observed_orcids":["https://orcid.org/0000-0001-9177-8958"]},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Blischak, Paul D.","raw_affiliation_strings":["The Ohio State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Ohio State University","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088566396","display_name":"Mathews Sarah","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mathews, Sarah","raw_affiliation_strings":["Commonwealth Scientific and Industrial Research Organisation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Commonwealth Scientific and Industrial Research Organisation","institution_ids":["https://openalex.org/I1292875679"]}]},{"author_position":"last","author":{"id":null,"display_name":"Tank, David C.","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I155093810","display_name":"University of Idaho","ror":"https://ror.org/03hbp5t65","country_code":"US","type":"education","lineage":["https://openalex.org/I155093810"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tank, David C.","raw_affiliation_strings":["University of Idaho"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Idaho","institution_ids":["https://openalex.org/I155093810"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2164,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.49563003,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.8291000127792358,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.8291000127792358,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12475","display_name":"Plant Parasitism and Resistance","score":0.05480000004172325,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.03790000081062317,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/castilleja","display_name":"Castilleja","score":0.9990000128746033},{"id":"https://openalex.org/keywords/orobanchaceae","display_name":"Orobanchaceae","score":1.0},{"id":"https://openalex.org/keywords/primer-design","display_name":"primer design","score":0.8640000224113464},{"id":"https://openalex.org/keywords/pentatricopeptide-repeat-genes","display_name":"pentatricopeptide repeat genes","score":0.9779999852180481},{"id":"https://openalex.org/keywords/phylogenetic-reconstruction","display_name":"phylogenetic inference","score":0.6190000176429749},{"id":"https://openalex.org/keywords/molecular-phylogeny","display_name":"molecular phylogeny","score":0.5989999771118164}],"concepts":[{"id":"https://openalex.org/C2781200638","wikidata":"https://www.wikidata.org/wiki/Q156192","display_name":"Orobanchaceae","level":2,"score":0.8500378131866455},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4534691274166107},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43871641159057617},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35588401556015015},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3390328288078308},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.09437352418899536}],"mesh":[],"locations_count":4,"locations":[{"id":"pmh:oai:easy.dans.knaw.nl:easy-dataset:97798","doi":null,"is_oa":false,"landing_page_url":"https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:97798","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:zenodo.org:4998977","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/4998977","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"doi:10.5061/dryad.52v62","doi":"https://doi.org/10.5061/dryad.52v62","is_oa":true,"landing_page_url":"https://doi.org/10.5061/dryad.52v62","pdf_url":null,"source":{"id":"https://openalex.org/S7407051161","display_name":"DRYAD","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"mag:2761565657","doi":null,"is_oa":false,"landing_page_url":"https://figshare.com/collections/Data_from_Primers_for_Castilleja_and_their_utility_across_Orobanchaceae_II_Single-copy_nuclear_loci/3894682","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:zenodo.org:4998977","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/4998977","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G4536426674","display_name":null,"funder_award_id":"DEB-1520040","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2763518298","https://openalex.org/W2758787978","https://openalex.org/W2057154523","https://openalex.org/W7214032670","https://openalex.org/W2238184837","https://openalex.org/W2091479070","https://openalex.org/W1998430592","https://openalex.org/W2148795523","https://openalex.org/W2229785481","https://openalex.org/W2786149710"],"abstract_inverted_index":{"Premise":[0],"of":[1,15,20,77,113],"the":[2,13,17,56,63,78,111],"study:":[3],"We":[4,42],"developed":[5,52],"primers":[6,25,92],"targeting":[7],"nuclear":[8],"loci":[9],"in":[10,32,49,105,140],"Castilleja":[11,50,141],"with":[12],"goal":[14],"reconstructing":[16],"evolutionary":[18],"history":[19],"this":[21],"challenging":[22],"clade.":[23],"These":[24,69,108],"were":[26,72,93,99],"tested":[27],"across":[28,118],"other":[29,122],"major":[30],"clades":[31],"Orobanchaceae":[33,125],"to":[34,74,101,136],"assess":[35],"their":[36],"broader":[37,103],"utility.":[38],"Methods":[39],"and":[40,51,62,83,97,142],"Results:":[41],"assembled":[43],"low-coverage":[44],"genomes":[45],"for":[46,55,87,95,121],"three":[47],"taxa":[48],"primer":[53,70],"combinations":[54,71],"single-copy":[57],"conserved":[58],"ortholog":[59],"set":[60],"(COSII)":[61],"pentatricopeptide":[64],"repeat":[65],"(PPR)":[66],"gene":[67],"family.":[68],"designed":[73,94],"take":[75],"advantage":[76],"Fluidigm":[79],"microfluidic":[80],"PCR":[81],"platform":[82],"are":[84],"well":[85],"suited":[86],"high-throughput":[88],"sequencing":[89],"applications.":[90],"Eighty-seven":[91],"Castilleja,":[96,119],"27":[98],"found":[100],"have":[102],"utility":[104,112],"Orobanchaceae.":[106,144],"Conclusions:":[107],"results":[109],"demonstrate":[110],"these":[114],"primers,":[115],"not":[116],"only":[117],"but":[120],"lineages":[123],"within":[124],"as":[126],"well.":[127],"This":[128],"expanded":[129],"molecular":[130],"toolkit":[131],"will":[132],"be":[133],"an":[134],"asset":[135],"future":[137],"phylogenetic":[138],"studies":[139],"throughout":[143]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2026-09-25T08:18:29.962427","created_date":"2017-10-20T00:00:00"}
