{"id":"https://openalex.org/W2744538641","doi":"https://doi.org/10.1088/1361-648x/aa9e66","title":"Role of special cross-links in structure formation of bacterial DNA polymer","display_name":"Role of special cross-links in structure formation of bacterial DNA polymer","publication_year":2017,"publication_date":"2017-11-30","ids":{"openalex":"https://openalex.org/W2744538641","doi":"https://doi.org/10.1088/1361-648x/aa9e66","mag":"2744538641","pmid":"https://pubmed.ncbi.nlm.nih.gov/29260726"},"language":"en","primary_location":{"id":"doi:10.1088/1361-648x/aa9e66","doi":"https://doi.org/10.1088/1361-648x/aa9e66","is_oa":false,"landing_page_url":"https://doi.org/10.1088/1361-648x/aa9e66","pdf_url":null,"source":{"id":"https://openalex.org/S190924190","display_name":"Journal of Physics Condensed Matter","issn_l":"0953-8984","issn":["0953-8984","1361-648X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-b","jufo-2","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Physics: Condensed Matter","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["arxiv","crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1701.05068","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009761925","display_name":"Tejal Agarwal","orcid":"https://orcid.org/0000-0002-4703-5214","observed_orcids":["https://orcid.org/0000-0002-4703-5214"]},"institutions":[{"id":"https://openalex.org/I181996519","display_name":"Indian Institute of Science Education and Research Pune","ror":"https://ror.org/028qa3n13","country_code":"IN","type":"education","lineage":["https://openalex.org/I181996519"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Tejal Agarwal","raw_affiliation_strings":["IISER-Pune, 900 NCL Innovation Park, Dr. Homi Bhaba Road, Pune-411008, India"],"raw_orcid":"https://orcid.org/0000-0002-4703-5214","affiliations":[{"raw_affiliation_string":"IISER-Pune, 900 NCL Innovation Park, Dr. Homi Bhaba Road, Pune-411008, India","institution_ids":["https://openalex.org/I181996519"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101432673","display_name":"G. P. Manjunath","orcid":"https://orcid.org/0000-0001-7107-0741","observed_orcids":["https://orcid.org/0000-0001-7107-0741"]},"institutions":[{"id":"https://openalex.org/I165916956","display_name":"Indian Institute of Science Education and Research Mohali","ror":"https://ror.org/01vztzd79","country_code":"IN","type":"education","lineage":["https://openalex.org/I165916956"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"G P Manjunath","raw_affiliation_strings":["IISER Mohali, Knowledge City, Sector 81, SAS Nagar, Manauli-140306, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IISER Mohali, Knowledge City, Sector 81, SAS Nagar, Manauli-140306, India","institution_ids":["https://openalex.org/I165916956"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076166249","display_name":"Farhat Habib","orcid":"https://orcid.org/0000-0002-4295-2750","observed_orcids":["https://orcid.org/0000-0002-4295-2750"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Farhat Habib","raw_affiliation_strings":["Inmobi, Cessna Business Park, Outer Ring Road, Bangalore-560103, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inmobi, Cessna Business Park, Outer Ring Road, Bangalore-560103, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007491199","display_name":"Pavana Lakshmi Vaddavalli","orcid":"https://orcid.org/0000-0002-9136-9967","observed_orcids":["https://orcid.org/0000-0002-9136-9967"]},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]},{"id":"https://openalex.org/I4210138270","display_name":"Cologne Excellence Cluster on Cellular Stress Responses in Aging Associated Diseases","ror":"https://ror.org/04c4bwh63","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210138270"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pavana Lakshmi Vaddavalli","raw_affiliation_strings":["CECAD Research Center, University of Cologne, Joseph-Stelzmann Str. 26, 50931 Cologne, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9136-9967","affiliations":[{"raw_affiliation_string":"CECAD Research Center, University of Cologne, Joseph-Stelzmann Str. 26, 50931 Cologne, Germany","institution_ids":["https://openalex.org/I180923762","https://openalex.org/I4210138270"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031790856","display_name":"A. C. Chatterji","orcid":"https://orcid.org/0000-0002-8493-8463","observed_orcids":["https://orcid.org/0000-0002-8493-8463"]},"institutions":[{"id":"https://openalex.org/I181996519","display_name":"Indian Institute of Science Education and Research Pune","ror":"https://ror.org/028qa3n13","country_code":"IN","type":"education","lineage":["https://openalex.org/I181996519"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Apratim Chatterji","raw_affiliation_strings":["Center for Energy Science, IISER-Pune, Dr. Homi Bhaba Road, Pune-411008, India","IISER-Pune, 900 NCL Innovation Park, Dr. Homi Bhaba Road, Pune-411008, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Energy Science, IISER-Pune, Dr. Homi Bhaba Road, Pune-411008, India","institution_ids":["https://openalex.org/I181996519"]},{"raw_affiliation_string":"IISER-Pune, 900 NCL Innovation Park, Dr. Homi Bhaba Road, Pune-411008, India","institution_ids":["https://openalex.org/I181996519"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5031790856"],"corresponding_institution_ids":["https://openalex.org/I181996519"],"apc_list":{"value":3325,"currency":"USD","value_usd":3325},"apc_paid":null,"fwci":0.3897,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.55558034,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":97},"biblio":{"volume":"30","issue":"3","first_page":"034003","last_page":"034003"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9018999934196472,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9018999934196472,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.020899999886751175,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.010200000368058681,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-polymers","display_name":"DNA polymers","score":0.5690000057220459},{"id":"https://openalex.org/keywords/bacterial-dna","display_name":"bacterial DNA","score":0.4950000047683716},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.8029999732971191},{"id":"https://openalex.org/keywords/cross-links","display_name":"cross-links","score":0.6690000295639038},{"id":"https://openalex.org/keywords/ring-polymers","display_name":"ring polymers","score":0.8230000138282776},{"id":"https://openalex.org/keywords/bead-spring-model","display_name":"bead-spring model","score":0.9620000123977661},{"id":"https://openalex.org/keywords/contact-maps","display_name":"contact maps","score":0.6079999804496765},{"id":"https://openalex.org/keywords/coarse-grained-polymer-model","display_name":"coarse-grained polymer model","score":0.7450000047683716},{"id":"https://openalex.org/keywords/thermal-fluctuations","display_name":"thermal fluctuations","score":0.7160000205039978},{"id":"https://openalex.org/keywords/chromosome-organization","display_name":"chromosome organization","score":0.33000001311302185}],"concepts":[{"id":"https://openalex.org/C521977710","wikidata":"https://www.wikidata.org/wiki/Q81163","display_name":"Polymer","level":2,"score":0.7202404737472534},{"id":"https://openalex.org/C19499675","wikidata":"https://www.wikidata.org/wiki/Q232207","display_name":"Monte Carlo method","level":2,"score":0.5522343516349792},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5437284111976624},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5264347791671753},{"id":"https://openalex.org/C166940927","wikidata":"https://www.wikidata.org/wiki/Q178827","display_name":"Monomer","level":3,"score":0.5093780755996704},{"id":"https://openalex.org/C2780378348","wikidata":"https://www.wikidata.org/wiki/Q25351438","display_name":"Ring (chemistry)","level":2,"score":0.505948007106781},{"id":"https://openalex.org/C199185054","wikidata":"https://www.wikidata.org/wiki/Q552299","display_name":"Chain (unit)","level":2,"score":0.4350748658180237},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.4341880977153778},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.40140455961227417},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.387986958026886},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.38442569971084595},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.3383505940437317},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.3217814564704895},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.31024298071861267},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16371330618858337},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16023549437522888},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011108","descriptor_name":"Polymers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1088/1361-648x/aa9e66","doi":"https://doi.org/10.1088/1361-648x/aa9e66","is_oa":false,"landing_page_url":"https://doi.org/10.1088/1361-648x/aa9e66","pdf_url":null,"source":{"id":"https://openalex.org/S190924190","display_name":"Journal of Physics Condensed Matter","issn_l":"0953-8984","issn":["0953-8984","1361-648X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-b","jufo-2","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320083","host_organization_name":"IOP Publishing","host_organization_lineage":["https://openalex.org/P4310320083","https://openalex.org/P4310311669"],"host_organization_lineage_names":["IOP Publishing","Institute of Physics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Physics: Condensed Matter","raw_type":"journal-article"},{"id":"pmid:29260726","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29260726","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of physics. Condensed matter : an Institute of Physics journal","raw_type":"Journal Article"},{"id":"pmh:oai:USBKOELN.ub.uni-koeln.de:19853","doi":null,"is_oa":false,"landing_page_url":"https://kups.ub.uni-koeln.de/19853/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400371","display_name":"K\u00f6lner Universit\u00e4ts PublikationsServer (Universit\u00e4t zu K\u00f6ln)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210115942","host_organization_name":"Rhenish Institute for Environmental Research","host_organization_lineage":["https://openalex.org/I4210115942"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"doc-type:article"},{"id":"pmh:oai:arXiv.org:1701.05068","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/1701.05068","pdf_url":"https://arxiv.org/pdf/1701.05068","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:2582240717","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/pdf/1701.05068.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1701.05068","doi":"https://doi.org/10.48550/arxiv.1701.05068","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1701.05068","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1701.05068","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/1701.05068","pdf_url":"https://arxiv.org/pdf/1701.05068","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G311757878","display_name":null,"funder_award_id":"IA/I/11/2500290","funder_id":"https://openalex.org/F4320320717","funder_display_name":"Department of Biotechnology, Ministry of Science and Technology, India"},{"id":"https://openalex.org/G5425888817","display_name":null,"funder_award_id":"EMR/2015/000018","funder_id":"https://openalex.org/F4320334771","funder_display_name":"Science and Engineering Research Board"},{"id":"https://openalex.org/G924243046","display_name":null,"funder_award_id":"IA/I/12/1/500529","funder_id":"https://openalex.org/F4320320717","funder_display_name":"Department of Biotechnology, Ministry of Science and Technology, India"}],"funders":[{"id":"https://openalex.org/F4320320717","display_name":"Department of Biotechnology, Ministry of Science and Technology, India","ror":"https://ror.org/03tjsyq23"},{"id":"https://openalex.org/F4320320719","display_name":"Department of Science and Technology, Ministry of Science and Technology, India","ror":"https://ror.org/0101xrq71"},{"id":"https://openalex.org/F4320334771","display_name":"Science and Engineering Research Board","ror":"https://ror.org/03ffdsr55"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2744538641.pdf","grobid_xml":"https://content.openalex.org/works/W2744538641.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1574083126","https://openalex.org/W1701083935","https://openalex.org/W1830481063","https://openalex.org/W1972645430","https://openalex.org/W1989582360","https://openalex.org/W1996484660","https://openalex.org/W2009144897","https://openalex.org/W2009653511","https://openalex.org/W2012842652","https://openalex.org/W2016696510","https://openalex.org/W2018617695","https://openalex.org/W2018658338","https://openalex.org/W2025620572","https://openalex.org/W2029018375","https://openalex.org/W2030948026","https://openalex.org/W2032816890","https://openalex.org/W2055077125","https://openalex.org/W2070021921","https://openalex.org/W2070224244","https://openalex.org/W2073504534","https://openalex.org/W2081101316","https://openalex.org/W2082852695","https://openalex.org/W2090037139","https://openalex.org/W2098497185","https://openalex.org/W2100148696","https://openalex.org/W2102707800","https://openalex.org/W2111032472","https://openalex.org/W2145297856","https://openalex.org/W2149366594","https://openalex.org/W2153856160","https://openalex.org/W2229187524","https://openalex.org/W2273796404","https://openalex.org/W2295297857","https://openalex.org/W2324097497","https://openalex.org/W2395654621","https://openalex.org/W2401568148","https://openalex.org/W2403306059","https://openalex.org/W2470258573","https://openalex.org/W2491201136","https://openalex.org/W2584570159","https://openalex.org/W2734431359","https://openalex.org/W4247053599","https://openalex.org/W4295549017","https://openalex.org/W4388376074"],"related_works":["https://openalex.org/W2582240717","https://openalex.org/W2734431359","https://openalex.org/W2580166790","https://openalex.org/W2939494238","https://openalex.org/W2888926069","https://openalex.org/W2113564335","https://openalex.org/W4309470296","https://openalex.org/W7011557720","https://openalex.org/W2165291672","https://openalex.org/W1602764329"],"abstract_inverted_index":{"Using":[0],"data":[1],"from":[2,115],"contact":[3,129],"maps":[4],"of":[5,8,32,53,61,69,77,85,109,131,172,185,190,226],"the":[6,41,51,62,70,75,91,97,103,107,110,116,128,169,173,222],"DNA-polymer":[7],"Escherichia":[9],"coli":[10],"(E.":[11],"Coli)":[12],"(at":[13],"kilobase":[14],"pair":[15],"resolution)":[16],"as":[17,196],"an":[18,82],"input":[19],"to":[20,57,167,210,220],"our":[21,148],"model,":[22,153],"we":[23,48,154,206],"introduce":[24],"cross-links":[25,55,86,120,164],"between":[26],"monomers":[27],"in":[28,142],"a":[29,33,58,78,143,186,191,227,231],"bead-spring":[30],"model":[31],"ring":[34,79,151],"polymer":[35,80,98,152,228],"at":[36,64,87,102,121],"very":[37],"specific":[38,122],"points":[39],"along":[40,90],"chain.":[42,92],"Via":[43],"suitable":[44,218],"Monte":[45],"Carlo":[46],"simulations,":[47],"show":[49],"that":[50,95,161],"presence":[52],"these":[54],"leads":[56],"particular":[59],"organization":[60,111,117,171],"chain":[63,188,229],"large":[65,104,223],"(micron)":[66],"length":[67,105,184],"scales":[68],"DNA.":[71],"We":[72,93,126,215],"also":[73],"investigate":[74],"structure":[76,225],"with":[81,119,230],"equal":[83],"number":[84],"random":[88],"positions":[89],"find":[94],"though":[96],"does":[99],"get":[100],"organized":[101],"scales,":[106],"nature":[108],"is":[112,199],"quite":[113],"different":[114],"observed":[118,160],"biologically":[123],"determined":[124],"positions.":[125],"used":[127,155,209],"map":[130],"E.":[132,197],"Coli":[133,198],"bacteria":[134],"which":[135],"has":[136],"around":[137,162],"4.6":[138],"million":[139],"base":[140],"pairs":[141],"single":[144],"circular":[145],"chromosome.":[146],"In":[147],"coarse-grained":[149],"flexible":[150],"4642":[156],"monomer":[157],"beads":[158],"and":[159],"80":[163],"are":[165],"enough":[166],"induce":[168],"large-scale":[170],"molecule":[174],"accounting":[175],"for":[176],"statistical":[177],"fluctuations":[178],"caused":[179],"by":[180],"thermal":[181],"energy.":[182],"The":[183],"DNA":[187],"even":[189],"simple":[192],"bacterial":[193],"cell":[194],"such":[195],"much":[200],"longer":[201],"than":[202],"typical":[203],"proteins,":[204],"hence":[205],"avoided":[207],"methods":[208],"tackle":[211],"protein":[212],"folding":[213],"problems.":[214],"define":[216],"new":[217],"quantities":[219],"identify":[221],"scale":[224],"few":[232],"cross-links.":[233]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2017-08-17T00:00:00"}
