{"id":"https://openalex.org/W2736199013","doi":"https://doi.org/10.1534/g3.117.043083","title":"Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size","display_name":"Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size","publication_year":2017,"publication_date":"2017-07-18","ids":{"openalex":"https://openalex.org/W2736199013","doi":"https://doi.org/10.1534/g3.117.043083","mag":"2736199013","pmid":"https://pubmed.ncbi.nlm.nih.gov/28717047","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/5592930"},"language":"en","primary_location":{"id":"doi:10.1534/g3.117.043083","doi":"https://doi.org/10.1534/g3.117.043083","is_oa":true,"landing_page_url":"https://doi.org/10.1534/g3.117.043083","pdf_url":"https://www.g3journal.org/content/ggg/7/9/3047.full.pdf","source":{"id":"https://openalex.org/S109822313","display_name":"G3 Genes Genomes Genetics","issn_l":"2160-1836","issn":["2160-1836"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310319844","host_organization_name":"Genetics Society of America","host_organization_lineage":["https://openalex.org/P4310319844"],"host_organization_lineage_names":["Genetics Society of America"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 Genes|Genomes|Genetics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.g3journal.org/content/ggg/7/9/3047.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005159599","display_name":"David L. Oldeschulte","orcid":"https://orcid.org/0000-0001-9704-7670","observed_orcids":["https://orcid.org/0000-0001-9704-7670"]},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David L Oldeschulte","raw_affiliation_strings":["Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091411850","display_name":"Yvette Halley","orcid":"https://orcid.org/0000-0002-5159-6137","observed_orcids":["https://orcid.org/0000-0002-5159-6137"]},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yvette A Halley","raw_affiliation_strings":["Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Miranda L Wilson","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Miranda L Wilson","raw_affiliation_strings":["Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061653980","display_name":"Eric K. Bhattarai","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric K Bhattarai","raw_affiliation_strings":["Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009731187","display_name":"Wesley A. Brashear","orcid":"https://orcid.org/0000-0002-3015-4751","observed_orcids":["https://orcid.org/0000-0002-3015-4751"]},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wesley Brashear","raw_affiliation_strings":["Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Joshua Hill","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua Hill","raw_affiliation_strings":["Genomics and Bioinformatics Core, Texas A&M AgriLife Research, College Station, Texas 77843"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics and Bioinformatics Core, Texas A&M AgriLife Research, College Station, Texas 77843","institution_ids":["https://openalex.org/I173268674","https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043823751","display_name":"Richard P. Metz","orcid":"https://orcid.org/0000-0002-9876-3385","observed_orcids":["https://orcid.org/0000-0002-9876-3385"]},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard P Metz","raw_affiliation_strings":["Genomics and Bioinformatics Core, Texas A&M AgriLife Research, College Station, Texas 77843"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics and Bioinformatics Core, Texas A&M AgriLife Research, College Station, Texas 77843","institution_ids":["https://openalex.org/I173268674","https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055316781","display_name":"Charles D. Johnson","orcid":"https://orcid.org/0000-0003-3892-7082","observed_orcids":["https://orcid.org/0000-0003-3892-7082"]},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles D Johnson","raw_affiliation_strings":["Genomics and Bioinformatics Core, Texas A&M AgriLife Research, College Station, Texas 77843"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics and Bioinformatics Core, Texas A&M AgriLife Research, College Station, Texas 77843","institution_ids":["https://openalex.org/I173268674","https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038014859","display_name":"Dale Rollins","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405280312","display_name":"Rolling Plains Quail Research Foundation","ror":"https://ror.org/02rhbxb71","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4405280312"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dale Rollins","raw_affiliation_strings":["Rolling Plains Quail Research Foundation, Rotan, Texas 79546"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rolling Plains Quail Research Foundation, Rotan, Texas 79546","institution_ids":["https://openalex.org/I4405280312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083661621","display_name":"Markus J. Peterson","orcid":"https://orcid.org/0000-0001-6145-0134","observed_orcids":["https://orcid.org/0000-0001-6145-0134"]},"institutions":[{"id":"https://openalex.org/I164936912","display_name":"The University of Texas at El Paso","ror":"https://ror.org/04d5vba33","country_code":"US","type":"education","lineage":["https://openalex.org/I164936912"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Markus J Peterson","raw_affiliation_strings":["Department of Biological Sciences, Border Biomedical Research Center, University of Texas at El Paso, Texas 79968"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Border Biomedical Research Center, University of Texas at El Paso, Texas 79968","institution_ids":["https://openalex.org/I164936912"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002044231","display_name":"Derek M. Bickhart","orcid":"https://orcid.org/0000-0003-2223-9285","observed_orcids":["https://orcid.org/0000-0003-2223-9285"]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I4210143546","display_name":"U.S. Dairy Forage Research Center","ror":"https://ror.org/048zyw409","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210143546","https://openalex.org/I4210154632"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Derek M Bickhart","raw_affiliation_strings":["Dairy Forage Research Center, United States Department of Agriculture\u2013Agricultural Research Service, Madison, Wisconsin 53706"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dairy Forage Research Center, United States Department of Agriculture\u2013Agricultural Research Service, Madison, Wisconsin 53706","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210143546"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037641358","display_name":"Jared E. Decker","orcid":"https://orcid.org/0000-0001-5685-7343","observed_orcids":["https://orcid.org/0000-0001-5685-7343"]},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jared E Decker","raw_affiliation_strings":["Division of Animal Sciences, University of Missouri, Columbia, Missouri 65211"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Animal Sciences, University of Missouri, Columbia, Missouri 65211","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033024350","display_name":"John F Sewell","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"John F Sewell","raw_affiliation_strings":["Harris Ranch, Uvalde, Texas 78801"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harris Ranch, Uvalde, Texas 78801","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006590721","display_name":"Christopher M. Seabury","orcid":"https://orcid.org/0000-0001-7104-0032","observed_orcids":["https://orcid.org/0000-0001-7104-0032"]},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christopher M Seabury","raw_affiliation_strings":["Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843","institution_ids":["https://openalex.org/I91045830"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5006590721"],"corresponding_institution_ids":["https://openalex.org/I91045830"],"apc_list":{"value":2709,"currency":"USD","value_usd":2709},"apc_paid":{"value":2709,"currency":"USD","value_usd":2709},"fwci":1.7864,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.84913366,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"9","first_page":"3047","last_page":"3058"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7544000148773193,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7544000148773193,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.17960000038146973,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.027699999511241913,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/northern-bobwhite","display_name":"northern bobwhite","score":0.9580000042915344},{"id":"https://openalex.org/keywords/scaled-quail","display_name":"scaled quail","score":0.9980000257492065},{"id":"https://openalex.org/keywords/callipepla-squamata","display_name":"Callipepla squamata","score":0.9990000128746033},{"id":"https://openalex.org/keywords/draft-genome-assembly","display_name":"draft genome assembly","score":0.8479999899864197},{"id":"https://openalex.org/keywords/genome-size","display_name":"genome size","score":0.40299999713897705},{"id":"https://openalex.org/keywords/segmental-duplication","display_name":"segmental duplication","score":0.7250000238418579},{"id":"https://openalex.org/keywords/heterozygous-variants","display_name":"heterozygous mutation","score":0.7319999933242798},{"id":"https://openalex.org/keywords/effective-population-size","display_name":"effective population size","score":0.8040000200271606},{"id":"https://openalex.org/keywords/population-decline","display_name":"population decline","score":0.7149999737739563},{"id":"https://openalex.org/keywords/coalescent-models","display_name":"coalescent models","score":0.628000020980835},{"id":"https://openalex.org/keywords/avian-genomes","display_name":"avian genomes","score":0.367000013589859},{"id":"https://openalex.org/keywords/genome-completeness","display_name":"genome completeness","score":0.3490000069141388}],"concepts":[{"id":"https://openalex.org/C2781143375","wikidata":"https://www.wikidata.org/wiki/Q868271","display_name":"Colinus","level":3,"score":0.9680342674255371},{"id":"https://openalex.org/C2778328004","wikidata":"https://www.wikidata.org/wiki/Q122422","display_name":"Squamata","level":2,"score":0.8596493005752563},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8565123081207275},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4529109299182892},{"id":"https://openalex.org/C2908546038","wikidata":"https://www.wikidata.org/wiki/Q142651","display_name":"Bobwhite quail","level":3,"score":0.4312232434749603},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.43096923828125},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.4232470989227295},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.40418702363967896},{"id":"https://openalex.org/C2777882087","wikidata":"https://www.wikidata.org/wiki/Q6072584","display_name":"Quail","level":2,"score":0.3207859992980957},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.17985782027244568},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.10746443271636963},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0507083535194397},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003088","descriptor_name":"Colinus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011784","descriptor_name":"Quail","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017384","descriptor_name":"Sequence Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020440","descriptor_name":"Gene Duplication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1534/g3.117.043083","doi":"https://doi.org/10.1534/g3.117.043083","is_oa":true,"landing_page_url":"https://doi.org/10.1534/g3.117.043083","pdf_url":"https://www.g3journal.org/content/ggg/7/9/3047.full.pdf","source":{"id":"https://openalex.org/S109822313","display_name":"G3 Genes Genomes Genetics","issn_l":"2160-1836","issn":["2160-1836"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310319844","host_organization_name":"Genetics Society of America","host_organization_lineage":["https://openalex.org/P4310319844"],"host_organization_lineage_names":["Genetics Society of America"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 Genes|Genomes|Genetics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5592930","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5592930","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 (Bethesda)","raw_type":"Text"},{"id":"pmid:28717047","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28717047","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 (Bethesda, Md.)","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:f9e2609835954c118001a2dc1bbbff04","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/f9e2609835954c118001a2dc1bbbff04","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"G3: Genes, Genomes, Genetics, Vol 7, Iss 9, Pp 3047-3058 (2017)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1534/g3.117.043083","doi":"https://doi.org/10.1534/g3.117.043083","is_oa":true,"landing_page_url":"https://doi.org/10.1534/g3.117.043083","pdf_url":"https://www.g3journal.org/content/ggg/7/9/3047.full.pdf","source":{"id":"https://openalex.org/S109822313","display_name":"G3 Genes Genomes Genetics","issn_l":"2160-1836","issn":["2160-1836"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310319844","host_organization_name":"Genetics Society of America","host_organization_lineage":["https://openalex.org/P4310319844"],"host_organization_lineage_names":["Genetics Society of America"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 Genes|Genomes|Genetics","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[{"score":0.5799999833106995,"display_name":"Life on land","id":"https://metadata.un.org/sdg/15"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G7150589052","display_name":null,"funder_award_id":"5090-31000-024-00-D","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320308125","display_name":"Texas AgriLife Research","ror":"https://ror.org/01f5ytq51"},{"id":"https://openalex.org/F4320308142","display_name":"Texas Parks and Wildlife Department","ror":"https://ror.org/02b5k3s39"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2736199013.pdf","grobid_xml":"https://content.openalex.org/works/W2736199013.grobid-xml"},"referenced_works_count":123,"referenced_works":["https://openalex.org/W86698423","https://openalex.org/W1122851723","https://openalex.org/W1494284268","https://openalex.org/W1569188151","https://openalex.org/W1582552437","https://openalex.org/W1600028186","https://openalex.org/W1667204707","https://openalex.org/W1906965342","https://openalex.org/W1942775232","https://openalex.org/W1968471467","https://openalex.org/W1970939676","https://openalex.org/W1972924519","https://openalex.org/W1977922844","https://openalex.org/W1987761312","https://openalex.org/W1992380787","https://openalex.org/W2001053145","https://openalex.org/W2001869339","https://openalex.org/W2002883632","https://openalex.org/W2003835898","https://openalex.org/W2004622806","https://openalex.org/W2007069369","https://openalex.org/W2007907862","https://openalex.org/W2008624985","https://openalex.org/W2010941136","https://openalex.org/W2013221974","https://openalex.org/W2018075292","https://openalex.org/W2019421914","https://openalex.org/W2021341670","https://openalex.org/W2026575204","https://openalex.org/W2028292442","https://openalex.org/W2032777878","https://openalex.org/W2038184529","https://openalex.org/W2043894779","https://openalex.org/W2045194790","https://openalex.org/W2046137036","https://openalex.org/W2051061144","https://openalex.org/W2051664019","https://openalex.org/W2055043387","https://openalex.org/W2057857382","https://openalex.org/W2060537320","https://openalex.org/W2062533068","https://openalex.org/W2063362959","https://openalex.org/W2066767039","https://openalex.org/W2071501400","https://openalex.org/W2077670403","https://openalex.org/W2080892263","https://openalex.org/W2081610815","https://openalex.org/W2084298744","https://openalex.org/W2087162329","https://openalex.org/W2091705028","https://openalex.org/W2091998086","https://openalex.org/W2093199752","https://openalex.org/W2096128575","https://openalex.org/W2096136209","https://openalex.org/W2096461461","https://openalex.org/W2096634299","https://openalex.org/W2098011555","https://openalex.org/W2098131122","https://openalex.org/W2098256402","https://openalex.org/W2101350700","https://openalex.org/W2108336788","https://openalex.org/W2109638276","https://openalex.org/W2114133992","https://openalex.org/W2116150018","https://openalex.org/W2118660857","https://openalex.org/W2118891269","https://openalex.org/W2119251018","https://openalex.org/W2122016967","https://openalex.org/W2124532543","https://openalex.org/W2125186370","https://openalex.org/W2127779696","https://openalex.org/W2130530163","https://openalex.org/W2130870186","https://openalex.org/W2131346206","https://openalex.org/W2133050257","https://openalex.org/W2134270353","https://openalex.org/W2134770471","https://openalex.org/W2135621733","https://openalex.org/W2135702159","https://openalex.org/W2137002710","https://openalex.org/W2139747296","https://openalex.org/W2140095783","https://openalex.org/W2140144089","https://openalex.org/W2141157287","https://openalex.org/W2141748016","https://openalex.org/W2142678478","https://openalex.org/W2145079310","https://openalex.org/W2145712154","https://openalex.org/W2150506261","https://openalex.org/W2153452535","https://openalex.org/W2154309452","https://openalex.org/W2155628349","https://openalex.org/W2156700347","https://openalex.org/W2158682869","https://openalex.org/W2159364800","https://openalex.org/W2161745371","https://openalex.org/W2161822073","https://openalex.org/W2167406239","https://openalex.org/W2168292723","https://openalex.org/W2170465373","https://openalex.org/W2171301694","https://openalex.org/W2177039388","https://openalex.org/W2213734294","https://openalex.org/W2239743844","https://openalex.org/W2255117023","https://openalex.org/W2256551898","https://openalex.org/W2323104573","https://openalex.org/W2328355842","https://openalex.org/W2332708294","https://openalex.org/W2380348317","https://openalex.org/W2468883596","https://openalex.org/W2494540659","https://openalex.org/W2552622217","https://openalex.org/W2588670520","https://openalex.org/W2739999456","https://openalex.org/W2765266778","https://openalex.org/W2768882967","https://openalex.org/W2992807898","https://openalex.org/W3180274570","https://openalex.org/W4238955438","https://openalex.org/W4240921071","https://openalex.org/W4285719527","https://openalex.org/W4292239814"],"related_works":["https://openalex.org/W2018075292","https://openalex.org/W2601857808","https://openalex.org/W2980636323","https://openalex.org/W2967211546","https://openalex.org/W7064961977","https://openalex.org/W4281741893","https://openalex.org/W2518896455","https://openalex.org/W4391218313","https://openalex.org/W2581365306","https://openalex.org/W2774475264"],"abstract_inverted_index":{")":[0],"populations":[1],"have":[2],"suffered":[3],"precipitous":[4],"declines":[5,226],"across":[6,216],"most":[7],"of":[8,33,52,88,93,132,205],"their":[9],"US":[10],"ranges.":[11],"Illumina-based":[12],"first-":[13],"(v1.0)":[14,116,197],"and":[15,26,35,50,60,103,117,141,167,187,198,203],"second-":[16],"(v2.0)":[17,119,200],"generation":[18],"draft":[19],"genome":[20,89,165,172],"assemblies":[21],"for":[22,112,135,213,229],"the":[23,27,46,53,76,113,136,142,162,170,194,214],"scaled":[24,65,114,137,163,195],"quail":[25,66,115,138,164,196],"bobwhite":[28,48,77,118,143,171,199,215],"produced":[29],"N50":[30],"scaffold":[31],"sizes":[32],"1.035":[34],"2.042":[36],"Mb,":[37],"thereby":[38],"producing":[39],"a":[40,129,221],"45-fold":[41],"improvement":[42],"in":[43,161,169,220],"contiguity":[44],"over":[45],"existing":[47],"assembly,":[49],"\u226590%":[51],"assembled":[54],"genomes":[55],"were":[56,110,177,210,227],"captured":[57],"within":[58,193],"1313":[59],"8990":[61],"scaffolds,":[62],"respectively.":[63,121],"The":[64],"assembly":[67,133],"(v1.0":[68],"=":[69,79],"1.045":[70],"Gb)":[71],"was":[72,83],"\u223c20%":[73],"smaller":[74],"than":[75],"(v2.0":[78],"1.254":[80],"Gb),":[81],"which":[82],"supported":[84],"by":[85,148],"kmer-based":[86],"estimates":[87,92,204],"size.":[90],"Nevertheless,":[91],"GC":[94],"content":[95,100],"(41.72%;":[96],"42.66%),":[97],"genome-wide":[98],"repetitive":[99],"(10.40%;":[101],"10.43%),":[102],"MAKER-predicted":[104],"protein":[105],"coding":[106],"genes":[107],"(17,131;":[108],"17,165)":[109],"similar":[111],"assemblies,":[120],"BUSCO":[122],"analyses":[123],"utilizing":[124],"3023":[125],"single-copy":[126],"orthologs":[127],"revealed":[128,185],"high":[130],"level":[131],"completeness":[134],"(v1.0;":[139],"84.8%)":[140],"(v2.0;":[144],"82.5%),":[145],"as":[146],"verified":[147],"comparison":[149],"with":[150],"well-established":[151],"avian":[152],"genomes.":[153],"We":[154],"also":[155],"detected":[156],"273":[157],"putative":[158],"segmental":[159],"duplications":[160],"(v1.0),":[166],"711":[168],"(v2.0),":[173],"including":[174],"some":[175],"that":[176],"shared":[178],"among":[179],"both":[180,230],"species.":[181],"Autosomal":[182],"variant":[183],"prediction":[184],"\u223c2.48":[186],"4.17":[188],"heterozygous":[189],"variants":[190],"per":[191],"kilobase":[192],"genomes,":[201],"respectively,":[202],"historic":[206],"effective":[207],"population":[208],"size":[209],"uniformly":[211],"higher":[212],"all":[217],"time":[218],"points":[219],"coalescent":[222],"model.":[223],"However,":[224],"large-scale":[225],"predicted":[228],"species":[231],"beginning":[232],"\u223c15-20":[233],"KYA.":[234]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":3}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2017-07-21T00:00:00"}
