{"id":"https://openalex.org/W2734538252","doi":"https://doi.org/10.7490/f1000research.1111351.1","title":"Inclusion of old sequences improves the estimation of evolutionary parameters from deep-rooted HIV epidemics","display_name":"Inclusion of old sequences improves the estimation of evolutionary parameters from deep-rooted HIV epidemics","publication_year":2016,"publication_date":"2016-02-29","ids":{"openalex":"https://openalex.org/W2734538252","doi":"https://doi.org/10.7490/f1000research.1111351.1","mag":"2734538252"},"language":"en","primary_location":{"id":"doi:10.7490/f1000research.1111351.1","doi":"https://doi.org/10.7490/f1000research.1111351.1","is_oa":true,"landing_page_url":"https://doi.org/10.7490/f1000research.1111351.1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"volume":null,"type":"other","indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.7490/f1000research.1111351.1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088073007","display_name":"Gonzalo Yebra","orcid":"https://orcid.org/0000-0002-3472-3667","observed_orcids":["https://orcid.org/0000-0002-3472-3667"]},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Gonzalo Yebra","raw_affiliation_strings":["University of Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000526097","display_name":"Manon Ragonnet\u2010Cronin","orcid":"https://orcid.org/0000-0002-4879-2209","observed_orcids":["https://orcid.org/0000-0002-4879-2209"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Manon Ragonnet-Cronin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071331157","display_name":"Deogratius Ssemwanga","orcid":"https://orcid.org/0000-0001-9675-4234","observed_orcids":["https://orcid.org/0000-0001-9675-4234"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Deogratius Ssemwanga","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056792394","display_name":"Chris M. Parry","orcid":"https://orcid.org/0000-0002-3295-0436","observed_orcids":["https://orcid.org/0000-0002-3295-0436"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chris M Parry","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083145188","display_name":"Christopher Hugh Logue","orcid":"https://orcid.org/0000-0003-3151-7590","observed_orcids":["https://orcid.org/0000-0003-3151-7590","https://orcid.org/0009-0006-9314-2359"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christopher Logue","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069232831","display_name":"Joel O. Wertheim","orcid":"https://orcid.org/0000-0003-4882-5856","observed_orcids":["https://orcid.org/0000-0003-4882-5856"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Joel O Wertheim","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107234801","display_name":"Patricia A. Cane","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Patricia A Cane","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002865552","display_name":"Pontiano Kaleebu","orcid":"https://orcid.org/0000-0001-9706-2977","observed_orcids":["https://orcid.org/0000-0001-9706-2977"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pontiano Kaleebu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5101975805","display_name":"Andrew Brown","orcid":"https://orcid.org/0000-0002-5700-3128","observed_orcids":["https://orcid.org/0000-0002-5700-3128","https://orcid.org/0009-0003-9066-3413"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andrew Leigh Brown","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5088073007"],"corresponding_institution_ids":["https://openalex.org/I98677209"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.5292999744415283,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.5292999744415283,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.26809999346733093,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.04430000111460686,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hiv","display_name":"HIV","score":0.7680000066757202},{"id":"https://openalex.org/keywords/phylogenetic-reconstruction","display_name":"phylogenetic inference","score":0.5490000247955322},{"id":"https://openalex.org/keywords/hiv-1-evolution","display_name":"HIV-1 evolution","score":0.40299999713897705}],"concepts":[{"id":"https://openalex.org/C2983643791","wikidata":"https://www.wikidata.org/wiki/Q1999993","display_name":"Open peer review","level":3,"score":0.8911720514297485},{"id":"https://openalex.org/C2992936677","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Plant biology","level":2,"score":0.7339096665382385},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.5936393737792969},{"id":"https://openalex.org/C109359841","wikidata":"https://www.wikidata.org/wiki/Q728944","display_name":"Inclusion (mineral)","level":2,"score":0.5003314018249512},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4996016025543213},{"id":"https://openalex.org/C96250715","wikidata":"https://www.wikidata.org/wiki/Q965330","display_name":"Estimation","level":2,"score":0.47334861755371094},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.46381184458732605},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4225423336029053},{"id":"https://openalex.org/C42407357","wikidata":"https://www.wikidata.org/wiki/Q521","display_name":"Physiology","level":1,"score":0.41463056206703186},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3393864035606384},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.33705392479896545},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.08240097761154175},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.07898536324501038},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06389498710632324},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.7490/f1000research.1111351.1","doi":"https://doi.org/10.7490/f1000research.1111351.1","is_oa":true,"landing_page_url":"https://doi.org/10.7490/f1000research.1111351.1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},{"id":"doi:10.7490/f1000research.1111351.1","doi":"https://doi.org/10.7490/f1000research.1111351.1","is_oa":true,"landing_page_url":"https://doi.org/10.7490/f1000research.1111351.1","pdf_url":null,"source":{"id":"https://openalex.org/S7407050752","display_name":"Faculty of 1000 Research Ltd","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Other"},{"id":"mag:2734538252","doi":null,"is_oa":true,"landing_page_url":"http://f1000research.com/posters/5-245","pdf_url":null,"source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":"F1000Research","raw_type":null}],"best_oa_location":{"id":"doi:10.7490/f1000research.1111351.1","doi":"https://doi.org/10.7490/f1000research.1111351.1","is_oa":true,"landing_page_url":"https://doi.org/10.7490/f1000research.1111351.1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W101488210","https://openalex.org/W4392329100","https://openalex.org/W7074551315","https://openalex.org/W3045520770","https://openalex.org/W7114786113","https://openalex.org/W360944630","https://openalex.org/W2055809429","https://openalex.org/W2194504057","https://openalex.org/W2310787201","https://openalex.org/W7143531343"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-10-28T10:33:24.094632","created_date":"2017-07-21T00:00:00"}
