{"id":"https://openalex.org/W2725041261","doi":null,"title":"Grammatical Approaches to Problems in RNA Bioinformatics","display_name":"Grammatical Approaches to Problems in RNA Bioinformatics","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2725041261","mag":"2725041261"},"language":"en","primary_location":{"id":"mag:2725041261","doi":null,"is_oa":false,"landing_page_url":"http://www.tbi.univie.ac.at/downloads/team/degree/hoener_defensio.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"volume":null,"type":"article","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005332412","display_name":"Christian H\u00f6ner zu Siederdissen","orcid":"https://orcid.org/0000-0001-9517-5839","observed_orcids":["https://orcid.org/0000-0001-9517-5839"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Christian H\u00f6ner zu Siederdissen","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-9517-5839","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5005332412"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9609000086784363,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9609000086784363,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.019099999219179153,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.008100000210106373,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-secondary-structure-prediction","display_name":"RNA secondary structure prediction","score":0.9129999876022339},{"id":"https://openalex.org/keywords/probabilistic-context-free-grammars","display_name":"probabilistic context-free grammars","score":0.8730000257492065},{"id":"https://openalex.org/keywords/non-canonical-base-pairs","display_name":"non-canonical base pairs","score":0.6890000104904175},{"id":"https://openalex.org/keywords/domain-specific-languages","display_name":"domain-specific languages","score":0.515999972820282},{"id":"https://openalex.org/keywords/haskell","display_name":"Haskell","score":0.5669999718666077},{"id":"https://openalex.org/keywords/formal-languages","display_name":"formal languages","score":0.5019999742507935},{"id":"https://openalex.org/keywords/computational-biology","display_name":"computational biology","score":0.4189999997615814},{"id":"https://openalex.org/keywords/algorithm-complexity-analysis","display_name":"algorithm complexity analysis","score":0.37599998712539673}],"concepts":[{"id":"https://openalex.org/C15708023","wikidata":"https://www.wikidata.org/wiki/Q80083","display_name":"Humanities","level":1,"score":0.41479235887527466},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.32499438524246216},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.21080422401428223}],"mesh":[],"locations_count":1,"locations":[{"id":"mag:2725041261","doi":null,"is_oa":false,"landing_page_url":"http://www.tbi.univie.ac.at/downloads/team/degree/hoener_defensio.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":119,"referenced_works":["https://openalex.org/W17659133","https://openalex.org/W30210889","https://openalex.org/W90077054","https://openalex.org/W1486562535","https://openalex.org/W1491178396","https://openalex.org/W1509276410","https://openalex.org/W1543796220","https://openalex.org/W1545172682","https://openalex.org/W1554360471","https://openalex.org/W1562942180","https://openalex.org/W1565539237","https://openalex.org/W1573380057","https://openalex.org/W1590310444","https://openalex.org/W1594564779","https://openalex.org/W1605441808","https://openalex.org/W1818785862","https://openalex.org/W1861164398","https://openalex.org/W1927794125","https://openalex.org/W1966981171","https://openalex.org/W1975148447","https://openalex.org/W1976021976","https://openalex.org/W1978403430","https://openalex.org/W1981777358","https://openalex.org/W1982680051","https://openalex.org/W1983815263","https://openalex.org/W1984675364","https://openalex.org/W1987010534","https://openalex.org/W1988409793","https://openalex.org/W1990853496","https://openalex.org/W2003716509","https://openalex.org/W2009736453","https://openalex.org/W2009775190","https://openalex.org/W2009818318","https://openalex.org/W2011368877","https://openalex.org/W2017302704","https://openalex.org/W2017313617","https://openalex.org/W2017838368","https://openalex.org/W2023013439","https://openalex.org/W2023206235","https://openalex.org/W2025763720","https://openalex.org/W2028574527","https://openalex.org/W2031082448","https://openalex.org/W2036208875","https://openalex.org/W2044595289","https://openalex.org/W2045332342","https://openalex.org/W2048706733","https://openalex.org/W2051713039","https://openalex.org/W2054931730","https://openalex.org/W2055043387","https://openalex.org/W2056653303","https://openalex.org/W2059099058","https://openalex.org/W2061103938","https://openalex.org/W2073858449","https://openalex.org/W2081124914","https://openalex.org/W2082765113","https://openalex.org/W2083612007","https://openalex.org/W2086561953","https://openalex.org/W2087064593","https://openalex.org/W2090301812","https://openalex.org/W2093896470","https://openalex.org/W2095145214","https://openalex.org/W2096306683","https://openalex.org/W2096669340","https://openalex.org/W2100948954","https://openalex.org/W2102017611","https://openalex.org/W2105045857","https://openalex.org/W2105950741","https://openalex.org/W2106293441","https://openalex.org/W2109297587","https://openalex.org/W2109638684","https://openalex.org/W2111272410","https://openalex.org/W2112774031","https://openalex.org/W2113547509","https://openalex.org/W2115275409","https://openalex.org/W2115396845","https://openalex.org/W2115729502","https://openalex.org/W2117431427","https://openalex.org/W2118165414","https://openalex.org/W2119340328","https://openalex.org/W2119717320","https://openalex.org/W2119863995","https://openalex.org/W2121918723","https://openalex.org/W2122679732","https://openalex.org/W2124050695","https://openalex.org/W2124479173","https://openalex.org/W2125126793","https://openalex.org/W2126295301","https://openalex.org/W2126883736","https://openalex.org/W2128976922","https://openalex.org/W2130479394","https://openalex.org/W2130682154","https://openalex.org/W2134489577","https://openalex.org/W2138631903","https://openalex.org/W2139048065","https://openalex.org/W2140302584","https://openalex.org/W2141808705","https://openalex.org/W2141885858","https://openalex.org/W2142676309","https://openalex.org/W2146721220","https://openalex.org/W2148599839","https://openalex.org/W2150563643","https://openalex.org/W2153185479","https://openalex.org/W2154241726","https://openalex.org/W2155858493","https://openalex.org/W2158381555","https://openalex.org/W2159117141","https://openalex.org/W2161043701","https://openalex.org/W2162035405","https://openalex.org/W2166268906","https://openalex.org/W2166480651","https://openalex.org/W2169105524","https://openalex.org/W2170157200","https://openalex.org/W2171643158","https://openalex.org/W2184688514","https://openalex.org/W2341171179","https://openalex.org/W2752885492","https://openalex.org/W2996326575","https://openalex.org/W3214380909","https://openalex.org/W4252717884"],"related_works":["https://openalex.org/W2391865159","https://openalex.org/W2344886339","https://openalex.org/W813135353","https://openalex.org/W7100328838","https://openalex.org/W775737663","https://openalex.org/W7062625005","https://openalex.org/W2081947573","https://openalex.org/W7100695181","https://openalex.org/W1515748642","https://openalex.org/W198357367"],"abstract_inverted_index":{"Formale":[0],"Sprachen":[1],"und":[2,11,51,273],"Grammatiken":[3,68],"sind":[4,45,205],"ein":[5,89,103,109,148,215,257],"klassisches":[6],"Thema":[7],"in":[8,32,69,102,141,186,224,229,244,249,260],"der":[9,33,43,157,219,230],"Informatik":[10],"maechtiges":[12],"Werkzeug":[13],"um":[14,124],"die":[15,46,52,133,155,165,245,267],"Komplexitaet":[16],"algorithmischen":[17],"Designs":[18],"zu":[19,79,127,182,193,199,271,274,281],"beherrschen.":[20],"In":[21,129],"dieser":[22,67],"Arbeit":[23],"werden":[24,76,132],"vier":[25],"wissenschaftliche":[26],"Arbeiten":[27],"zur":[28],"Loesung":[29,146],"von":[30,48,91,114,174,222],"Problemen":[31],"computergestuetzten":[34],"Biologie":[35],"praesentiert.":[36,83],"Diese":[37],"Probleme,":[38],"ausgewaehlt":[39],"aus":[40],"dem":[41],"Bereich":[42],"RNA-Bioinformatik,":[44],"Vorhersage":[47,221],"RNA":[49,60,81,93,184,200],"Sekundaerstrukturen":[50,185],"Suche":[53],"nach":[54],"homologen":[55],"Sequenzen":[56,94,117],"bekannter":[57],"nichtkodierender":[58],"(nc-)":[59],"Familien.":[61,153],"Ausserdem":[62],"wird":[63,161,239],"eine":[64,70,145,162,170,240],"effiziente":[65],"Einbettung":[66,255],"funktionale":[71,246],"Programmiersprache":[72,247],"vorgestellt.\r\n":[73],"Zuerst":[75],"zwei":[77],"Algorithmen":[78,269],"strukturellen":[80],"Familien":[82,159,177],"Eine":[84,253],"strukturelle":[85],"ncRNA":[86,152],"Familie":[87,171],"is":[88],"Alignment":[90],"verwandten":[92,116],"zusammen":[95],"mit":[96,151],"ihrer":[97],"gemeinsamen":[98],"Struktur.":[99],"Sie":[100],"kann":[101],"stochastisches":[104],"Modell":[105,110,217],"verwandelt":[106],"werden.":[107],"Solch":[108,214],"ermoeglicht":[111,256],"das":[112,190,195,196,208],"Auffinden":[113],"weiteren":[115],"auf":[118,277],"genomweiter":[119],"Ebene.":[120],"Verschiedene":[121],"Moeglichkeiten":[122],"existieren":[123],"solche":[125,254],"Modelle":[126],"erzeugen.":[128],"Kapitel":[130,142,187,250],"5":[131],"Konsequenzen":[134],"verschiedener":[135],"Kodierungen":[136],"diskutiert.\r\n":[137],"Der":[139,180],"Algorithmus":[140,181],"6":[143],"bietet":[144],"fuer":[147],"anderes":[149],"Problem":[150],"Um":[154],"Qualitaet":[156],"vorhandenen":[158],"sicherzustellen":[160],"Methode":[163],"bereitgestellt,":[164],"es":[166,265],"erlaubt":[167],"festzustellen":[168],"ob":[169],"genuegend":[172],"stark":[173],"allen":[175],"anderen":[176],"differenziert.\r\n":[178],"erweiterten":[183],"7":[188],"erweitert":[189],"nearest-neighbor":[191],"Sekundaerstrukturmodell":[192],"einem":[194],"bekannte":[197],"Wissen":[198],"Strukturen":[201],"besser":[202],"reflektiert.":[203],"Insbesondere":[204,263],"Basenpaarungen":[206,223],"ueber":[207],"kanonische":[209],"Watson-Crick":[210],"Paarungsmodell":[211],"hinaus":[212],"moeglich.":[213],"erweitertes":[216],"dient":[218],"besseren":[220],"Regionen":[225],"welche":[226],"als":[227],"wichtig":[228],"biologischen":[231],"Rolle":[232],"vieler":[233],"RNAs":[234],"erkannt":[235],"wurden.\r\n":[236],"Zuletzt":[238],"domaenenspezische":[241],"Sprache,":[242],"eingebettet":[243],"Haskell,":[248],"8":[251],"besprochen.":[252],"einfacheres":[258],"Entwickeln":[259],"einer":[261],"Hochsprache.":[262],"ist":[264],"moeglich":[266],"vorherigen":[268],"einfach":[270],"formulieren":[272],"erweitern":[275],"ohne":[276],"C-nahe":[278],"Geschwindigkeit":[279],"verzichten":[280],"muessen.":[282]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2017-07-14T00:00:00"}