{"id":"https://openalex.org/W2608429162","doi":"https://doi.org/10.3389/fpls.2017.00678","title":"Association Mapping Reveals Novel Genetic Loci Contributing to Flooding Tolerance during Germination in Indica Rice","display_name":"Association Mapping Reveals Novel Genetic Loci Contributing to Flooding Tolerance during Germination in Indica Rice","publication_year":2017,"publication_date":"2017-04-25","ids":{"openalex":"https://openalex.org/W2608429162","doi":"https://doi.org/10.3389/fpls.2017.00678","mag":"2608429162","pmid":"https://pubmed.ncbi.nlm.nih.gov/28487722","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/5404183"},"language":"en","primary_location":{"id":"doi:10.3389/fpls.2017.00678","doi":"https://doi.org/10.3389/fpls.2017.00678","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fpls.2017.00678","pdf_url":"https://www.frontiersin.org/articles/10.3389/fpls.2017.00678/pdf","source":{"id":"https://openalex.org/S2493613807","display_name":"Frontiers in Plant Science","issn_l":"1664-462X","issn":["1664-462X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Plant Science","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fpls.2017.00678/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101750042","display_name":"Mengchen Zhang","orcid":"https://orcid.org/0000-0003-2099-9416","observed_orcids":["https://orcid.org/0000-0003-2099-9416"]},"institutions":[{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengchen Zhang","raw_affiliation_strings":["State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China","institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058741602","display_name":"Qing Lu","orcid":"https://orcid.org/0000-0001-6287-553X","observed_orcids":["https://orcid.org/0000-0001-6287-553X"]},"institutions":[{"id":"https://openalex.org/I4210099004","display_name":"Guangdong Academy of Agricultural Sciences","ror":"https://ror.org/01rkwtz72","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210099004"]},{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qing Lu","raw_affiliation_strings":["Crop Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou, China","State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Crop Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou, China","institution_ids":["https://openalex.org/I4210099004"]},{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China","institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067234314","display_name":"Wei Wu","orcid":"https://orcid.org/0000-0002-0267-1284","observed_orcids":["https://orcid.org/0000-0002-0267-1284"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wei Wu","raw_affiliation_strings":["Seeds Administration Center of Zhejiang Province, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seeds Administration Center of Zhejiang Province, Hangzhou, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101694095","display_name":"Xiaojun Niu","orcid":"https://orcid.org/0000-0002-6884-7369","observed_orcids":["https://orcid.org/0000-0002-6884-7369"]},"institutions":[{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaojun Niu","raw_affiliation_strings":["State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China","institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063522688","display_name":"Caihong Wang","orcid":"https://orcid.org/0000-0001-5629-4421","observed_orcids":["https://orcid.org/0000-0001-5629-4421"]},"institutions":[{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Caihong Wang","raw_affiliation_strings":["State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China","institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yue Feng","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Feng","raw_affiliation_strings":["State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China","institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5119929908","display_name":"Qun Jie Xu","orcid":"https://orcid.org/0000-0002-5956-2927","observed_orcids":["https://orcid.org/0000-0002-5956-2927"]},"institutions":[{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qun Xu","raw_affiliation_strings":["State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China","institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100388461","display_name":"Shan Wang","orcid":"https://orcid.org/0000-0003-0140-4974","observed_orcids":["https://orcid.org/0000-0003-0140-4974"]},"institutions":[{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shan Wang","raw_affiliation_strings":["State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China","institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101520572","display_name":"Xiaoping Yuan","orcid":"https://orcid.org/0000-0002-6189-4808","observed_orcids":["https://orcid.org/0000-0002-6189-4808"]},"institutions":[{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoping Yuan","raw_affiliation_strings":["State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China","institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100551044","display_name":"Hanyong Yu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hanyong Yu","raw_affiliation_strings":["State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China","institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031972329","display_name":"Yiping Wang","orcid":"https://orcid.org/0000-0002-3178-3752","observed_orcids":["https://orcid.org/0000-0002-3178-3752"]},"institutions":[{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiping Wang","raw_affiliation_strings":["State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China","institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060099082","display_name":"Xinghua Wei","orcid":"https://orcid.org/0000-0002-0883-3694","observed_orcids":["https://orcid.org/0000-0002-0883-3694"]},"institutions":[{"id":"https://openalex.org/I4210160522","display_name":"China National Rice Research Institute","ror":"https://ror.org/05szcn205","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522"]},{"id":"https://openalex.org/I4391767812","display_name":"State Key Laboratory of Rice Biology","ror":"https://ror.org/05s5qx907","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210160522","https://openalex.org/I4391767812","https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xinghua Wei","raw_affiliation_strings":["State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China","institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5060099082"],"corresponding_institution_ids":["https://openalex.org/I4210160522","https://openalex.org/I4391767812"],"apc_list":{"value":3150,"currency":"CHF","value_usd":3801},"apc_paid":{"value":3150,"currency":"CHF","value_usd":3801},"fwci":6.7786,"has_fulltext":true,"cited_by_count":83,"citation_normalized_percentile":{"value":0.97115575,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"8","issue":null,"first_page":"678","last_page":"678"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12472","display_name":"Plant responses to water stress","score":0.9702000021934509,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12472","display_name":"Plant responses to water stress","score":0.9702000021934509,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.026599999517202377,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12045","display_name":"Rice Cultivation and Yield Improvement","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/flood-tolerance","display_name":"flooding tolerance","score":0.8230000138282776},{"id":"https://openalex.org/keywords/indica-rice","display_name":"Indica rice","score":0.8930000066757202},{"id":"https://openalex.org/keywords/coleoptile-elongation","display_name":"coleoptile elongation","score":0.847000002861023},{"id":"https://openalex.org/keywords/seed-germination","display_name":"seed germination","score":0.7179999947547913},{"id":"https://openalex.org/keywords/genetic-loci","display_name":"genetic loci","score":0.7599999904632568},{"id":"https://openalex.org/keywords/haplotype-analysis","display_name":"haplotype analysis","score":0.7419999837875366},{"id":"https://openalex.org/keywords/candidate-genes","display_name":"candidate genes","score":0.8299999833106995},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphisms","display_name":"single nucleotide polymorphisms","score":0.7649999856948853},{"id":"https://openalex.org/keywords/rice-breeding","display_name":"rice breeding","score":0.44600000977516174}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7273389101028442},{"id":"https://openalex.org/C100701293","wikidata":"https://www.wikidata.org/wiki/Q193838","display_name":"Germination","level":2,"score":0.7138842940330505},{"id":"https://openalex.org/C186594467","wikidata":"https://www.wikidata.org/wiki/Q1429176","display_name":"Flooding (psychology)","level":2,"score":0.6634630560874939},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4961136281490326},{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.45712417364120483},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.4337608218193054},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.4150416851043701},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.3559856414794922},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19019541144371033},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.15977904200553894},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fpls.2017.00678","doi":"https://doi.org/10.3389/fpls.2017.00678","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fpls.2017.00678","pdf_url":"https://www.frontiersin.org/articles/10.3389/fpls.2017.00678/pdf","source":{"id":"https://openalex.org/S2493613807","display_name":"Frontiers in Plant Science","issn_l":"1664-462X","issn":["1664-462X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Plant Science","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:4270769","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5404183","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5404183","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5404183","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Front Plant Sci","raw_type":"Text"},{"id":"pmid:28487722","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28487722","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in plant science","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:e6c6efcdbad846e49553bf398dfd7cf2","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/e6c6efcdbad846e49553bf398dfd7cf2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Plant Science, Vol 8 (2017)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fpls.2017.00678","doi":"https://doi.org/10.3389/fpls.2017.00678","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fpls.2017.00678","pdf_url":"https://www.frontiersin.org/articles/10.3389/fpls.2017.00678/pdf","source":{"id":"https://openalex.org/S2493613807","display_name":"Frontiers in Plant Science","issn_l":"1664-462X","issn":["1664-462X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Plant Science","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.9208999872207642,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G5560234440","display_name":null,"funder_award_id":"2016YFD0100101-02","funder_id":"https://openalex.org/F4320323155","funder_display_name":"Chinese Academy of Agricultural Sciences"},{"id":"https://openalex.org/G5684766250","display_name":null,"funder_award_id":"CAAS\u2010ASTIP\u2010201X\u2010CNRRI","funder_id":"https://openalex.org/F4320323155","funder_display_name":"Chinese Academy of Agricultural Sciences"},{"id":"https://openalex.org/G5730570096","display_name":null,"funder_award_id":"2016YFD0100101-02","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"}],"funders":[{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"},{"id":"https://openalex.org/F4320323155","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750"},{"id":"https://openalex.org/F4320335848","display_name":"Agricultural Science and Technology Innovation Program","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2608429162.pdf","grobid_xml":"https://content.openalex.org/works/W2608429162.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1842924979","https://openalex.org/W1929386910","https://openalex.org/W1963575260","https://openalex.org/W1973413549","https://openalex.org/W1974899003","https://openalex.org/W1986497012","https://openalex.org/W1992211373","https://openalex.org/W2006163516","https://openalex.org/W2026829849","https://openalex.org/W2049780744","https://openalex.org/W2060124718","https://openalex.org/W2076086045","https://openalex.org/W2078595668","https://openalex.org/W2094838559","https://openalex.org/W2098442527","https://openalex.org/W2102919397","https://openalex.org/W2103577442","https://openalex.org/W2110035718","https://openalex.org/W2116361866","https://openalex.org/W2118123164","https://openalex.org/W2121604817","https://openalex.org/W2124592092","https://openalex.org/W2126132928","https://openalex.org/W2127684760","https://openalex.org/W2131822092","https://openalex.org/W2133289621","https://openalex.org/W2134063692","https://openalex.org/W2138920781","https://openalex.org/W2139967388","https://openalex.org/W2141616651","https://openalex.org/W2141916112","https://openalex.org/W2143920095","https://openalex.org/W2150993481","https://openalex.org/W2152207030","https://openalex.org/W2154845780","https://openalex.org/W2156480474","https://openalex.org/W2157664977","https://openalex.org/W2164528040","https://openalex.org/W2200365462","https://openalex.org/W2211781534","https://openalex.org/W2295921135","https://openalex.org/W2414466255","https://openalex.org/W2462342490","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4297458950","https://openalex.org/W4317606126","https://openalex.org/W2915960455","https://openalex.org/W4401483937","https://openalex.org/W7216192711","https://openalex.org/W3111644567","https://openalex.org/W2211781534","https://openalex.org/W7100352089","https://openalex.org/W7204998280","https://openalex.org/W4385232570"],"abstract_inverted_index":{"Rice":[0],"(Oryza":[1],"sativa":[2],"L.)":[3],"is":[4,26],"the":[5,11,24,55,61,69,105,166,173,184,231,252],"only":[6],"cereal":[7],"crop":[8],"that":[9],"possesses":[10],"ability":[12],"to":[13,30,177,246],"germinate":[14],"under":[15,139],"flooded":[16,93],"or":[17],"other":[18],"oxygen-deficient":[19],"conditions.":[20],"Rapid":[21],"elongation":[22,179],"of":[23,58,76,108,172,187,234,254],"coleoptile":[25,35,74,94,101,178],"a":[27,116,140,200],"perfect":[28],"response":[29],"flooding":[31,221,236,255],"during":[32,238],"germination,":[33],"with":[34,220],"length":[36,95,102],"differing":[37],"among":[38],"various":[39],"rice":[40,235],"varieties.":[41],"Despite":[42],"multiple":[43],"studies":[44,224],"have":[45],"uncovered":[46],"valuable":[47],"information":[48],"concerning":[49],"this":[50,188,226],"trait":[51],"by":[52,123,156,207],"focusing":[53],"on":[54,165,198,225],"physiological":[56],"metabolism":[57],"oxygen":[59],"stress,":[60],"underlying":[62],"genetic":[63],"mechanism":[64,233],"still":[65],"remains":[66],"unknown.":[67],"In":[68],"present":[70],"study,":[71],"we":[72],"screened":[73],"lengths":[75],"432":[77],"indica":[78],"varieties":[79,215],"germinated":[80],"in":[81,92,99,213,257],"two":[82,174],"environments":[83],"(normal":[84],"and":[85,87,111,135,147,158,161,250],"flooded)":[86],"found":[88],"more":[89],"variation":[90],"existing":[91],"(FCL)":[96],"rather":[97],"than":[98],"normal":[100],"(NCL).":[103],"With":[104],"phenotypic":[106],"data":[107,193],"NCL,":[109,145],"FCL":[110,146,157],"FTI":[112],"(flooding":[113],"tolerance":[114,237,256],"index),":[115],"genome-wide":[117],"association":[118],"study":[119],"(GWAS)":[120],"was":[121,194,204],"performed":[122],"using":[124],"5291":[125],"single":[126],"nucleotide":[127],"polymorphism":[128],"(SNP)":[129],"markers.":[130],"We":[131,196,240],"detected":[132],"two,":[133],"eleven":[134],"nine":[136],"significant":[137],"SNPs":[138],"mixed":[141],"linear":[142],"mode":[143],"for":[144],"FTI,":[148],"respectively.":[149],"Of":[150],"these":[151],"SNPs,":[152],"five":[153],"were":[154],"shared":[155],"FTI.":[159],"Haplotype":[160],"phenotype":[162],"effect":[163],"analysis":[164,212],"highest":[167],"ranking":[168],"locus":[169],"indicated":[170],"one":[171],"haplotypes":[175],"contributed":[176],"remarkably.":[180],"To":[181],"better":[182],"understand":[183],"controlling":[185],"gene":[186,202,227],"locus,":[189],"reported":[190],"expression":[191],"profile":[192],"applied.":[195],"focused":[197],"LOC_Os06g03520,":[199],"candidate":[201],"which":[203],"highly":[205],"induced":[206],"anoxia":[208],"(~507":[209],"fold).":[210],"Sequence":[211],"51":[214],"demonstrated":[216],"Hap.2":[217],"associated":[218],"perfectly":[219],"tolerance.":[222],"Further":[223],"may":[228,244],"help":[229],"explore":[230],"molecular":[232],"germination.":[239],"believe":[241],"our":[242],"discoveries":[243],"conduce":[245],"isolating":[247],"major":[248],"genes":[249],"aid":[251],"improvement":[253],"modern":[258],"breeding":[259],"programs.":[260]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2017-05-05T00:00:00"}