{"id":"https://openalex.org/W2603734366","doi":"https://doi.org/10.1101/gr.214155.116","title":"Genome graphs and the evolution of genome inference","display_name":"Genome graphs and the evolution of genome inference","publication_year":2017,"publication_date":"2017-03-30","ids":{"openalex":"https://openalex.org/W2603734366","doi":"https://doi.org/10.1101/gr.214155.116","mag":"2603734366","pmid":"https://pubmed.ncbi.nlm.nih.gov/28360232","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/5411762"},"language":"en","primary_location":{"id":"doi:10.1101/gr.214155.116","doi":"https://doi.org/10.1101/gr.214155.116","is_oa":true,"landing_page_url":"https://doi.org/10.1101/gr.214155.116","pdf_url":"http://genome.cshlp.org/content/27/5/665.full.pdf","source":{"id":"https://openalex.org/S43092948","display_name":"Genome Research","issn_l":"1088-9051","issn":["1088-9051","1549-5469"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310315909","host_organization_name":"Cold Spring Harbor Laboratory Press","host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Research","raw_type":"journal-article"},"volume":null,"type":"preprint","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"http://genome.cshlp.org/content/27/5/665.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061203088","display_name":"Benedict Paten","orcid":"https://orcid.org/0000-0001-8863-3539","observed_orcids":["https://orcid.org/0000-0001-8863-3539"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benedict Paten","raw_affiliation_strings":["Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA","1Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, Santa Cruz, California 95064, USA"],"raw_orcid":"https://orcid.org/0000-0001-8863-3539","affiliations":[{"raw_affiliation_string":"Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"1Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, Santa Cruz, California 95064, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031360521","display_name":"Adam M. Novak","orcid":"https://orcid.org/0000-0001-5828-047X","observed_orcids":["https://orcid.org/0000-0001-5828-047X"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam M. Novak","raw_affiliation_strings":["Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA","1Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, Santa Cruz, California 95064, USA"],"raw_orcid":"https://orcid.org/0000-0001-5828-047X","affiliations":[{"raw_affiliation_string":"Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"1Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, Santa Cruz, California 95064, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054998077","display_name":"Jordan M. Eizenga","orcid":"https://orcid.org/0000-0001-8345-8356","observed_orcids":["https://orcid.org/0000-0001-8345-8356"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jordan M. Eizenga","raw_affiliation_strings":["Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA","1Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, Santa Cruz, California 95064, USA"],"raw_orcid":"https://orcid.org/0000-0001-8345-8356","affiliations":[{"raw_affiliation_string":"Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"1Genomics Institute, CBSE, 501C Engineering 2, University of California Santa Cruz, Santa Cruz, California 95064, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008992371","display_name":"Erik P. Garrison","orcid":"https://orcid.org/0000-0003-3821-631X","observed_orcids":["https://orcid.org/0000-0003-3821-631X"]},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Garrison Erik","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Cambridge, UK","2Wellcome Trust Sanger Institute, Cambridge CB10 1SA, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0003-3821-631X","affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Cambridge, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"2Wellcome Trust Sanger Institute, Cambridge CB10 1SA, United Kingdom","institution_ids":["https://openalex.org/I2802476451"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":334,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"5","first_page":"665","last_page":"676"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-graphs","display_name":"genome graphs","score":0.996999979019165},{"id":"https://openalex.org/keywords/human-reference-genome","display_name":"human reference genome","score":0.8040000200271606},{"id":"https://openalex.org/keywords/reference-bias","display_name":"reference bias","score":0.9919999837875366},{"id":"https://openalex.org/keywords/graph-based-data-representation","display_name":"graph-based data representation","score":0.6970000267028809},{"id":"https://openalex.org/keywords/read-mapping","display_name":"read mapping","score":0.9150000214576721},{"id":"https://openalex.org/keywords/variant-calling","display_name":"variant calling","score":0.9990000128746033},{"id":"https://openalex.org/keywords/haplotype-inference","display_name":"haplotype inference","score":0.9580000042915344},{"id":"https://openalex.org/keywords/human-genetic-variation","display_name":"human genetic variation","score":0.5080000162124634}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7452477812767029},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7293993234634399},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7074640989303589},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.6827654242515564},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6297398805618286},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.6093679666519165},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.426960825920105},{"id":"https://openalex.org/C97425143","wikidata":"https://www.wikidata.org/wiki/Q164786","display_name":"1000 Genomes Project","level":5,"score":0.42102566361427307},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.4143611490726471},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34715771675109863},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.24858993291854858},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22290852665901184},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1820087432861328},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.10021820664405823},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1101/gr.214155.116","doi":"https://doi.org/10.1101/gr.214155.116","is_oa":true,"landing_page_url":"https://doi.org/10.1101/gr.214155.116","pdf_url":"http://genome.cshlp.org/content/27/5/665.full.pdf","source":{"id":"https://openalex.org/S43092948","display_name":"Genome Research","issn_l":"1088-9051","issn":["1088-9051","1549-5469"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310315909","host_organization_name":"Cold Spring Harbor Laboratory Press","host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Research","raw_type":"journal-article"},{"id":"doi:10.1101/101816","doi":"https://doi.org/10.1101/101816","is_oa":true,"landing_page_url":"https://doi.org/10.1101/101816","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2017/03/14/101816.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:5411762","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5411762","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Res","raw_type":"Text"},{"id":"pmid:28360232","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28360232","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome research","raw_type":"Journal Article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt92c8s6fm","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/92c8s6fm","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genome Research, vol 27, iss 5","raw_type":"article"},{"id":"pmh:oai:open-archive.highwire.org:genome:27/5/665","doi":null,"is_oa":false,"landing_page_url":"http://genome.cshlp.org/cgi/content/short/27/5/665","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1101/gr.214155.116","doi":"https://doi.org/10.1101/gr.214155.116","is_oa":true,"landing_page_url":"https://doi.org/10.1101/gr.214155.116","pdf_url":"http://genome.cshlp.org/content/27/5/665.full.pdf","source":{"id":"https://openalex.org/S43092948","display_name":"Genome Research","issn_l":"1088-9051","issn":["1088-9051","1549-5469"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310315909","host_organization_name":"Cold Spring Harbor Laboratory Press","host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Research","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G8824438077","display_name":"Center for Big Data in Translational Genomics","funder_award_id":"U54HG007990","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320306159","display_name":"W. M. Keck Foundation","ror":"https://ror.org/000dswa46"},{"id":"https://openalex.org/F4320306164","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2603734366.pdf","grobid_xml":"https://content.openalex.org/works/W2603734366.grobid-xml"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W1489349053","https://openalex.org/W1544273448","https://openalex.org/W1813440684","https://openalex.org/W1843974934","https://openalex.org/W1850890413","https://openalex.org/W1912672559","https://openalex.org/W1962960380","https://openalex.org/W1966936568","https://openalex.org/W1978844013","https://openalex.org/W1978981589","https://openalex.org/W1991008526","https://openalex.org/W2002438422","https://openalex.org/W2007772656","https://openalex.org/W2010380543","https://openalex.org/W2021724381","https://openalex.org/W2035596374","https://openalex.org/W2046601740","https://openalex.org/W2092138236","https://openalex.org/W2095680943","https://openalex.org/W2096441981","https://openalex.org/W2104549677","https://openalex.org/W2108234281","https://openalex.org/W2113312463","https://openalex.org/W2121743800","https://openalex.org/W2122707695","https://openalex.org/W2122732537","https://openalex.org/W2129264270","https://openalex.org/W2131016694","https://openalex.org/W2132510972","https://openalex.org/W2136651963","https://openalex.org/W2137351413","https://openalex.org/W2138917689","https://openalex.org/W2140673900","https://openalex.org/W2141408763","https://openalex.org/W2142113273","https://openalex.org/W2142642738","https://openalex.org/W2147477044","https://openalex.org/W2152490525","https://openalex.org/W2157219052","https://openalex.org/W2160969485","https://openalex.org/W2168909179","https://openalex.org/W2170551349","https://openalex.org/W2171769070","https://openalex.org/W2181011911","https://openalex.org/W2203559675","https://openalex.org/W2344013120","https://openalex.org/W2345970915","https://openalex.org/W2461009071","https://openalex.org/W2474973645","https://openalex.org/W2510875395","https://openalex.org/W2519167944","https://openalex.org/W2527708324","https://openalex.org/W2543066836","https://openalex.org/W2553566324","https://openalex.org/W2612812586","https://openalex.org/W2614266827","https://openalex.org/W2786984148","https://openalex.org/W2788099780","https://openalex.org/W2803103233","https://openalex.org/W2952338502","https://openalex.org/W2952366981","https://openalex.org/W2952379406","https://openalex.org/W2953263404","https://openalex.org/W3000142595","https://openalex.org/W3100935868","https://openalex.org/W4235690512","https://openalex.org/W4394666350"],"related_works":["https://openalex.org/W4235690512","https://openalex.org/W2800050638","https://openalex.org/W3138080604","https://openalex.org/W2888300707","https://openalex.org/W4289836878","https://openalex.org/W2965998663","https://openalex.org/W3172189673","https://openalex.org/W2950122868","https://openalex.org/W1983052889","https://openalex.org/W1978981589"],"abstract_inverted_index":{"The":[0],"human":[1,11,27,39,54],"reference":[2,33,59],"genome":[3,104,118],"is":[4],"part":[5],"of":[6,9,25,38,53,65],"the":[7,36,107],"foundation":[8],"modern":[10],"biology":[12],"and":[13,69,94,114],"a":[14,22,31,63],"monumental":[15],"scientific":[16],"achievement.":[17],"However,":[18],"because":[19],"it":[20,29,45],"excludes":[21],"great":[23],"deal":[24],"common":[26],"variation,":[28],"introduces":[30],"pervasive":[32],"bias":[34],"into":[35,58],"field":[37],"genomics.":[40],"To":[41],"reduce":[42],"this":[43],"bias,":[44],"makes":[46],"sense":[47],"to":[48,67,92,102,122],"draw":[49],"on":[50],"representative":[51],"collections":[52],"genomes,":[55],"brought":[56],"together":[57],"cohorts.":[60],"There":[61],"are":[62,120],"number":[64],"techniques":[66],"represent":[68],"organize":[70],"data":[71],"gleaned":[72],"from":[73,83],"these":[74,96],"cohorts,":[75],"many":[76],"using":[77],"ideas":[78],"implicitly":[79],"or":[80],"explicitly":[81],"borrowed":[82],"graph-based":[84,97],"models.":[85],"Here,":[86],"we":[87,99],"survey":[88],"various":[89],"projects":[90],"underway":[91],"build":[93],"apply":[95],"structures-which":[98],"collectively":[100],"refer":[101],"as":[103],"graphs-and":[105],"discuss":[106],"improvements":[108],"in":[109],"read":[110],"mapping,":[111],"variant":[112],"calling,":[113],"haplotype":[115],"determination":[116],"that":[117],"graphs":[119],"expected":[121],"produce.":[123]},"counts_by_year":[{"year":2026,"cited_by_count":38},{"year":2025,"cited_by_count":31},{"year":2024,"cited_by_count":33},{"year":2023,"cited_by_count":27},{"year":2022,"cited_by_count":30},{"year":2021,"cited_by_count":45},{"year":2020,"cited_by_count":47},{"year":2019,"cited_by_count":50},{"year":2018,"cited_by_count":22},{"year":2017,"cited_by_count":11}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2017-04-07T00:00:00"}