{"id":"https://openalex.org/W2596605341","doi":null,"title":"Defining a High Throughput Sequencing identification framework for freshwater ecosystem biomonitoring","display_name":"Defining a High Throughput Sequencing identification framework for freshwater ecosystem biomonitoring","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2596605341","mag":"2596605341"},"language":"en","primary_location":{"id":"pmh:oai:e.bangor.ac.uk:9811","doi":null,"is_oa":false,"landing_page_url":"http://e.bangor.ac.uk/9811/7/Signed%20Declaration%20Bista.pdf","pdf_url":"http://e.bangor.ac.uk/9811/7/Signed%20Declaration%20Bista.pdf","source":{"id":"https://openalex.org/S4306402103","display_name":"Bangor University Research Portal (Bangor University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I161548249","host_organization_name":"Bangor University","host_organization_lineage":["https://openalex.org/I161548249"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036139978","display_name":"Iliana-Aglaia Bista","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Iliana-Aglaia Bista","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5036139978"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14399","display_name":"Invertebrate Taxonomy and Ecology","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10669","display_name":"Freshwater macroinvertebrate diversity and ecology","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benthic-macroinvertebrates","display_name":"benthic macroinvertebrates","score":0.949999988079071},{"id":"https://openalex.org/keywords/dna-barcoding","display_name":"DNA barcoding","score":0.9430000185966492},{"id":"https://openalex.org/keywords/coi","display_name":"COI","score":0.7599999904632568},{"id":"https://openalex.org/keywords/environmental-dna","display_name":"environmental DNA","score":0.7559999823570251},{"id":"https://openalex.org/keywords/metabarcoding","display_name":"metabarcoding","score":0.8870000243186951},{"id":"https://openalex.org/keywords/trichoptera","display_name":"Trichoptera","score":0.9350000023841858},{"id":"https://openalex.org/keywords/gastropoda","display_name":"Gastropoda","score":0.9890000224113464},{"id":"https://openalex.org/keywords/mock-communities","display_name":"mock communities","score":0.7170000076293945},{"id":"https://openalex.org/keywords/biomass-estimation","display_name":"biomass estimation","score":0.6370000243186951},{"id":"https://openalex.org/keywords/species-identification","display_name":"species identification","score":0.574999988079071},{"id":"https://openalex.org/keywords/aquatic-biodiversity","display_name":"aquatic biodiversity","score":0.5759999752044678}],"concepts":[{"id":"https://openalex.org/C109051061","wikidata":"https://www.wikidata.org/wiki/Q864610","display_name":"Biomonitoring","level":2,"score":0.8442656993865967},{"id":"https://openalex.org/C46685645","wikidata":"https://www.wikidata.org/wiki/Q2890135","display_name":"Freshwater ecosystem","level":3,"score":0.6204587817192078},{"id":"https://openalex.org/C175327387","wikidata":"https://www.wikidata.org/wiki/Q3289906","display_name":"Aquatic ecosystem","level":2,"score":0.5468409657478333},{"id":"https://openalex.org/C110872660","wikidata":"https://www.wikidata.org/wiki/Q37813","display_name":"Ecosystem","level":2,"score":0.5395530462265015},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.5256860256195068},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.5164823532104492},{"id":"https://openalex.org/C141732470","wikidata":"https://www.wikidata.org/wiki/Q1154642","display_name":"DNA barcoding","level":2,"score":0.516284167766571},{"id":"https://openalex.org/C24518262","wikidata":"https://www.wikidata.org/wiki/Q16197023","display_name":"Threatened species","level":3,"score":0.4669167995452881},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43334347009658813},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.4265921711921692},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.42420607805252075},{"id":"https://openalex.org/C83042747","wikidata":"https://www.wikidata.org/wiki/Q686881","display_name":"Benthic zone","level":2,"score":0.4187122583389282},{"id":"https://openalex.org/C185933670","wikidata":"https://www.wikidata.org/wiki/Q52105","display_name":"Habitat","level":2,"score":0.28594255447387695},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:e.bangor.ac.uk:9811","doi":null,"is_oa":false,"landing_page_url":"http://e.bangor.ac.uk/9811/7/Signed%20Declaration%20Bista.pdf","pdf_url":"http://e.bangor.ac.uk/9811/7/Signed%20Declaration%20Bista.pdf","source":{"id":"https://openalex.org/S4306402103","display_name":"Bangor University Research Portal (Bangor University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I161548249","host_organization_name":"Bangor University","host_organization_lineage":["https://openalex.org/I161548249"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},{"id":"mag:2596605341","doi":null,"is_oa":false,"landing_page_url":"https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.704797","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Clean water and sanitation","score":0.6618000268936157,"id":"https://metadata.un.org/sdg/6"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4396978599","https://openalex.org/W2180972717","https://openalex.org/W6948170704","https://openalex.org/W4214911686","https://openalex.org/W4378833408","https://openalex.org/W6962649823","https://openalex.org/W2765713462","https://openalex.org/W7217746745","https://openalex.org/W3043916054","https://openalex.org/W2020200409"],"abstract_inverted_index":{"Freshwater":[0],"ecosystems":[1],"are":[2,19,51],"currently":[3],"amongst":[4],"the":[5,32,36,78,91,122,130,144,155,179,257,311,321],"most":[6],"threatened":[7],"habitats":[8],"due":[9,58],"to":[10,21,41,46,59,164,189,219,249],"high":[11],"levels":[12,222],"of":[13,35,38,93,97,124,132,147,154,173,200,226,241,245,256,264,275,278,299],"anthropogenic":[14],"stress":[15],"and":[16,25,80,176,205,223,231,260,268],"increasing":[17,129],"efforts":[18],"required":[20],"monitor":[22],"their":[23,60,270],"status":[24],"assess":[26],"aquatic":[27,39],"biodiversity.":[28],"Biomonitoring,":[29],"which":[30,64,76,89],"is":[31,44,73,81],"systematic":[33],"measurement":[34],"responses":[37],"biota":[40],"environmental":[42,194,202],"stressors,":[43],"used":[45,53,151,183,198,237],"evaluate":[47,269],"ecosystem":[48,56,117,134,292],"status.":[49],"Macroinvertebrates":[50],"commonly":[52],"organisms":[54],"for":[55,101,128,170,272,287],"assessment,":[57],"numerous":[61],"biomonitoring":[62,289],"qualities,":[63],"qualify":[65],"them":[66],"as":[67,139,302],"ecological":[68],"indicators.":[69],"Traditional":[70],"taxonomy-based":[71],"monitoring":[72],"labour":[74],"intensive,":[75],"limits":[77,90],"throughput,":[79],"often":[82],"inefficient":[83],"in":[84,116],"providing":[85],"species":[86,172],"level":[87],"identification,":[88],"accuracy":[92],"detections.":[94],"The":[95],"introduction":[96],"molecular":[98],"based":[99,126],"methods":[100,188],"biomonitoring,":[102,135],"especially":[103],"when":[104],"coupled":[105],"with":[106],"High":[107,184],"Throughput":[108,185],"Sequencing":[109,186],"(HTS)":[110,187],"applications,":[111],"offers":[112],"a":[113,140,166,217,238,251],"step":[114],"change":[115],"monitoring.":[118],"\\nHere":[119],"I":[120,150,159,182,197,236],"tested":[121],"utility":[123],"DNA":[125,152,203],"applications":[127],"efficiency":[131,271],"freshwater":[133],"using":[136],"benthic":[137],"macroinvertebrates":[138],"target":[141],"group.":[142],"For":[143],"first":[145],"part":[146],"this":[148],"work,":[149],"barcoding":[153],"Cytochrome":[156],"Oxidase":[157],"Subunit":[158],"(COI),":[160],"from":[161,178,192,296],"individual":[162],"specimens,":[163],"populate":[165],"barcode":[167],"reference":[168],"library":[169],"94":[171],"Trichoptera,":[174],"Gastropoda":[175],"Chironomidae":[177],"UK.":[180],"Then,":[181],"characterise":[190],"diversity":[191,221,294],"complex":[193],"samples.":[195,280],"First,":[196],"metabarcoding":[199,255],"aqueous":[201],"(eDNA)":[204],"community":[206,227,322],"invertebrate":[207],"samples":[208],"(Chironomidae":[209],"pupal":[210],"exuviae),":[211],"collected":[212],"on":[213,229,320],"regular":[214],"intervals":[215],"throughout":[216],"year,":[218],"identify":[220],"temporal":[224],"patterns":[225],"variation":[228],"ecosystem-wide":[230],"group":[232],"specific":[233],"scales.":[234],"Finally,":[235],"structured":[239],"design":[240],"mock":[242],"macroinvertebrate":[243],"communities,":[244],"known":[246],"biomass":[247,276],"content,":[248],"perform":[250],"comparison":[252],"between":[253],"PCR-based":[254],"COI":[258],"gene":[259],"PCR-free":[261],"shotgun":[262],"sequencing":[263],"mitochondrial":[265],"genomes":[266],"(mito-metagenomics),":[267],"accurate":[273],"characterisation":[274],"content":[277],"bulk":[279],"Overall,":[281],"HTS":[282],"has":[283],"demonstrated":[284],"great":[285],"potential":[286],"advancing":[288],"efforts,":[290],"allowing":[291],"scale":[293],"detection":[295],"non-invasive":[297],"types":[298],"samples,":[300],"such":[301],"eDNA,":[303],"whilst":[304],"moving":[305],"into":[306],"mito-metagenomic":[307],"work":[308],"could":[309],"improve":[310],"field":[312],"even":[313],"further":[314],"by":[315],"improving":[316],"quantitative":[317],"abundance":[318],"results":[319],"composition":[323],"level.":[324]},"counts_by_year":[],"updated_date":"2026-10-01T08:54:57.152042","created_date":"2017-03-23T00:00:00"}
