{"id":"https://openalex.org/W2593044962","doi":null,"title":"Evaluating DNA Extraction and Analysis of Ancient Seeds: A Study in Peach","display_name":"Evaluating DNA Extraction and Analysis of Ancient Seeds: A Study in Peach","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2593044962","mag":"2593044962"},"language":"en","primary_location":{"id":"pmh:oai:knowledgecommons.lakeheadu.ca:2453/804","doi":null,"is_oa":true,"landing_page_url":"http://knowledgecommons.lakeheadu.ca/handle/2453/804","pdf_url":"http://knowledgecommons.lakeheadu.ca/handle/2453/804","source":{"id":"https://openalex.org/S4306401541","display_name":"Knowledge Commons (Lakehead University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I72541430","host_organization_name":"Lakehead University","host_organization_lineage":["https://openalex.org/I72541430"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://knowledgecommons.lakeheadu.ca/handle/2453/804","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071614318","display_name":"Felicia Joseph","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Felicia Joseph","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5071614318"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.5493000149726868,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.5493000149726868,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.24269999563694,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.06560000032186508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ancient-dna-extraction","display_name":"ancient DNA extraction","score":0.6970000267028809},{"id":"https://openalex.org/keywords/peach","display_name":"peach","score":1.0},{"id":"https://openalex.org/keywords/archaeological-seeds","display_name":"archaeological seeds","score":0.75},{"id":"https://openalex.org/keywords/liangzhu-culture","display_name":"Liangzhu culture","score":0.796999990940094},{"id":"https://openalex.org/keywords/chlorophyll-a-b-binding-protein","display_name":"chlorophyll a/b binding protein","score":0.8989999890327454},{"id":"https://openalex.org/keywords/species-identification","display_name":"species identification","score":0.6269999742507935},{"id":"https://openalex.org/keywords/chloroplast-dna-markers","display_name":"chloroplast DNA markers","score":0.7070000171661377},{"id":"https://openalex.org/keywords/microsatellite-markers","display_name":"microsatellite markers","score":0.7319999933242798},{"id":"https://openalex.org/keywords/dna-damage","display_name":"DNA damage","score":0.6480000019073486},{"id":"https://openalex.org/keywords/oxidation","display_name":"oxidation","score":0.453000009059906},{"id":"https://openalex.org/keywords/hydrolysis","display_name":"hydrolysis","score":0.9649999737739563},{"id":"https://openalex.org/keywords/prunus-mira","display_name":"Prunus mira","score":0.8240000009536743},{"id":"https://openalex.org/keywords/prunus-davidiana","display_name":"Prunus davidiana","score":0.9620000123977661}],"concepts":[{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.5369536280632019},{"id":"https://openalex.org/C189338579","wikidata":"https://www.wikidata.org/wiki/Q290447","display_name":"Ancient DNA","level":3,"score":0.5086968541145325},{"id":"https://openalex.org/C78063203","wikidata":"https://www.wikidata.org/wiki/Q3062596","display_name":"DNA extraction","level":4,"score":0.49860334396362305},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.412083238363266},{"id":"https://openalex.org/C144027150","wikidata":"https://www.wikidata.org/wiki/Q48803","display_name":"Horticulture","level":1,"score":0.3619662821292877},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3559611439704895},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.3425528407096863},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.3214949667453766},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.19457489252090454},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.19287478923797607},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.17286139726638794},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14712443947792053},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.08723878860473633},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.08592531085014343},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:knowledgecommons.lakeheadu.ca:2453/804","doi":null,"is_oa":true,"landing_page_url":"http://knowledgecommons.lakeheadu.ca/handle/2453/804","pdf_url":"http://knowledgecommons.lakeheadu.ca/handle/2453/804","source":{"id":"https://openalex.org/S4306401541","display_name":"Knowledge Commons (Lakehead University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I72541430","host_organization_name":"Lakehead University","host_organization_lineage":["https://openalex.org/I72541430"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},{"id":"mag:2593044962","doi":null,"is_oa":false,"landing_page_url":"https://knowledgecommons.lakeheadu.ca/handle/2453/804","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:knowledgecommons.lakeheadu.ca:2453/804","doi":null,"is_oa":true,"landing_page_url":"http://knowledgecommons.lakeheadu.ca/handle/2453/804","pdf_url":"http://knowledgecommons.lakeheadu.ca/handle/2453/804","source":{"id":"https://openalex.org/S4306401541","display_name":"Knowledge Commons (Lakehead University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I72541430","host_organization_name":"Lakehead University","host_organization_lineage":["https://openalex.org/I72541430"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.40450000762939453}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320313495","display_name":"Lakehead University","ror":"https://ror.org/023p7mg82"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2593044962.pdf","grobid_xml":"https://content.openalex.org/works/W2593044962.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W1973214876","https://openalex.org/W2013367562","https://openalex.org/W2138270253","https://openalex.org/W2184860510"],"related_works":["https://openalex.org/W7095812057","https://openalex.org/W2046731120","https://openalex.org/W7114926496","https://openalex.org/W2996918597","https://openalex.org/W7006055033","https://openalex.org/W7095900347","https://openalex.org/W4404640845","https://openalex.org/W2166794100","https://openalex.org/W7204387824","https://openalex.org/W2060531604"],"abstract_inverted_index":{"The":[0],"peach":[1,76,87,115,197,226,241,262],"(Prunus":[2],"persica)":[3],"is":[4,21],"one":[5],"of":[6,44,56,303,311,317,319],"the":[7,14,42,50,54,57,61,79,91,98,119,127,172,239,260,272,291,295,301,315],"most":[8,99],"widely":[9],"grown":[10],"stone":[11,116,296],"fruit":[12],"in":[13,94,123,238,271,293],"world":[15],"but":[16,246],"its":[17,142,201,228],"origin":[18],"and":[19,52,141,151,163,205,215,227,286,299,307],"domestication":[20],"still":[22],"being":[23],"debated.":[24],"Genetic":[25],"research":[26,72],"has":[27,68],"focused":[28],"on":[29,259],"identifying":[30],"desirable":[31],"genes":[32,160,234],"for":[33,39,49,133,158,161,175,192,195,220],"agricultural":[34],"purposes,":[35],"suitable":[36,159],"genetic":[37,46,71,136,162,173],"targets":[38,137,174],"species":[40,144,176,193],"identification,":[41],"development":[43],"a":[45],"linkage":[47],"map":[48],"peach,":[51],"ultimately":[53],"publication":[55],"whole":[58],"genome":[59],"by":[60],"International":[62],"Peach":[63],"Genome":[64],"Initiative.":[65],"However,":[66],"there":[67],"been":[69],"no":[70],"applied":[73,111,251],"to":[74,96,102,112,126,156,170,200,207,223,252,264,279,284,305],"ancient":[75,196,253,261],"stones.":[77],"In":[78],"present":[80,270],"study":[81],"DNA":[82,104,209,214,237,273],"was":[83,154,168,186,257,297],"extracted":[84],"from":[85,90,105,118,138,210],"modern":[86,240],"samples":[88,242],"collected":[89,117,298],"Zhejiang":[92],"Province":[93],"China":[95,124],"assess":[97],"effective":[100],"methods":[101,108],"extract":[103],"seeds.":[106],"These":[107],"were":[109,218,247,269],"then":[110],"an":[113,189],"archaeological":[114,121],"Maoshan":[120],"site":[122],"dated":[125],"Liangzhu":[128],"Culture":[129],"Period.":[130],"A":[131,178],"search":[132,157],"previously":[134],"sequenced":[135],"P.":[139,145,147,149,152],"persica":[140],"wild":[143,230],"ferganensis,":[146],"mira,":[148],"kansuensis,":[150],"davidiana":[153],"performed":[155,258],"phylogenetic":[164],"analysis.":[165],"Phylogenetic":[166],"analysis":[167,256],"used":[169],"evaluate":[171],"identification.":[177],"Type":[179],"II":[180],"chlorophyll":[181],"a/b-binding":[182],"protein":[183],"gene":[184],"(Lhcb2)":[185],"identified":[187],"as":[188],"ideal":[190],"marker":[191],"identification":[194],"specimens":[198],"due":[199,283],"small":[202],"amplicon":[203],"size":[204],"ability":[206,222],"amplify":[208],"low":[211],"quantities.":[212],"Chloroplast":[213],"microsatellite":[216],"markers":[217],"assessed":[219],"their":[221],"distinguish":[224],"between":[225],"various":[229],"species.":[231],"Several":[232],"chloroplast":[233],"successfully":[235],"amplified":[236],"(rbcL,":[243],"psbM-trnD,":[244],"clpP),":[245],"not":[248],"successful":[249],"when":[250],"samples.":[254,322],"GC-MS":[255],"stones":[263],"determine":[265],"whether":[266],"miscoding":[267],"lesions":[268],"sequence":[274],"which":[275,294],"may":[276,313],"have":[277],"led":[278],"amplification":[280,318],"failure.":[281],"Damage":[282],"oxidation":[285],"hydrolysis":[287],"are":[288],"consistent":[289],"with":[290],"location":[292],"suggest":[300],"possibility":[302],"exposure":[304],"water":[306],"burning.":[308],"Both":[309],"sources":[310],"damage":[312],"explain":[314],"lack":[316],"these":[320],"archeological":[321]},"counts_by_year":[],"updated_date":"2026-08-29T07:29:34.045763","created_date":"2017-03-16T00:00:00"}
