{"id":"https://openalex.org/W2591088537","doi":"https://doi.org/10.1093/cid/ciw876","title":"Evolution and Transmission of Carbapenem-Resistant Klebsiella pneumoniae Expressing the blaOXA-232 Gene During an Institutional Outbreak Associated With Endoscopic Retrograde Cholangiopancreatography","display_name":"Evolution and Transmission of Carbapenem-Resistant Klebsiella pneumoniae Expressing the blaOXA-232 Gene During an Institutional Outbreak Associated With Endoscopic Retrograde Cholangiopancreatography","publication_year":2017,"publication_date":"2017-01-06","ids":{"openalex":"https://openalex.org/W2591088537","doi":"https://doi.org/10.1093/cid/ciw876","mag":"2591088537","pmid":"https://pubmed.ncbi.nlm.nih.gov/28362935"},"language":"en","primary_location":{"id":"doi:10.1093/cid/ciw876","doi":"https://doi.org/10.1093/cid/ciw876","is_oa":true,"landing_page_url":"https://doi.org/10.1093/cid/ciw876","pdf_url":"https://academic.oup.com/cid/article-pdf/64/7/894/14161491/ciw876.pdf","source":{"id":"https://openalex.org/S72350973","display_name":"Clinical Infectious Diseases","issn_l":"1058-4838","issn":["1058-4838","1537-6591"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Clinical Infectious Diseases","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/cid/article-pdf/64/7/894/14161491/ciw876.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023047688","display_name":"Shangxin Yang","orcid":"https://orcid.org/0000-0001-9991-1178","observed_orcids":["https://orcid.org/0000-0001-9991-1178"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shangxin Yang","raw_affiliation_strings":["Pathology and LaboratoryMedicine, David Geffen School of Medicine, University of California, Los Angeles"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pathology and LaboratoryMedicine, David Geffen School of Medicine, University of California, Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068214232","display_name":"Peera Hemarajata","orcid":"https://orcid.org/0000-0001-6182-9136","observed_orcids":["https://orcid.org/0000-0001-6182-9136"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peera Hemarajata","raw_affiliation_strings":["Pathology and LaboratoryMedicine, David Geffen School of Medicine, University of California, Los Angeles"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pathology and LaboratoryMedicine, David Geffen School of Medicine, University of California, Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110025610","display_name":"Janet A. Hindler","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Janet Hindler","raw_affiliation_strings":["Pathology and LaboratoryMedicine, David Geffen School of Medicine, University of California, Los Angeles"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pathology and LaboratoryMedicine, David Geffen School of Medicine, University of California, Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100373562","display_name":"Fan Li","orcid":"https://orcid.org/0000-0002-2400-9021","observed_orcids":["https://orcid.org/0000-0002-2400-9021"]},"institutions":[{"id":"https://openalex.org/I1336910626","display_name":"Children's Hospital Los Angeles","ror":"https://ror.org/00412ts95","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1336910626"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fan Li","raw_affiliation_strings":["Mi Next Generation Science Core Laboratory, Children's Hospital Los Angeles, California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mi Next Generation Science Core Laboratory, Children's Hospital Los Angeles, California","institution_ids":["https://openalex.org/I1336910626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014973232","display_name":"Helty Adisetiyo","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1336910626","display_name":"Children's Hospital Los Angeles","ror":"https://ror.org/00412ts95","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1336910626"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Helty Adisetiyo","raw_affiliation_strings":["Mi Next Generation Science Core Laboratory, Children's Hospital Los Angeles, California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mi Next Generation Science Core Laboratory, Children's Hospital Los Angeles, California","institution_ids":["https://openalex.org/I1336910626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073718294","display_name":"Grace M. Aldrovandi","orcid":"https://orcid.org/0000-0003-1604-9637","observed_orcids":["https://orcid.org/0000-0003-1604-9637"]},"institutions":[{"id":"https://openalex.org/I1336910626","display_name":"Children's Hospital Los Angeles","ror":"https://ror.org/00412ts95","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1336910626"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Grace Aldrovandi","raw_affiliation_strings":["Mi Next Generation Science Core Laboratory, Children's Hospital Los Angeles, California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mi Next Generation Science Core Laboratory, Children's Hospital Los Angeles, California","institution_ids":["https://openalex.org/I1336910626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076788078","display_name":"Robert Sebra","orcid":"https://orcid.org/0000-0001-9267-2426","observed_orcids":["https://orcid.org/0000-0001-9267-2426"]},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Sebra","raw_affiliation_strings":["Icahn School of Medicine at Mount Sinai, New York, New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Icahn School of Medicine at Mount Sinai, New York, New York","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032714338","display_name":"Andrew Kasarskis","orcid":"https://orcid.org/0000-0001-6454-9076","observed_orcids":["https://orcid.org/0000-0001-6454-9076"]},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Kasarskis","raw_affiliation_strings":["Icahn School of Medicine at Mount Sinai, New York, New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Icahn School of Medicine at Mount Sinai, New York, New York","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090396208","display_name":"Duncan MacCannell","orcid":"https://orcid.org/0000-0002-8869-1840","observed_orcids":["https://orcid.org/0000-0002-8869-1840"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]},{"id":"https://openalex.org/I4210121439","display_name":"National Center for Emerging and Zoonotic Infectious Diseases","ror":"https://ror.org/02ggwpx62","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934","https://openalex.org/I4210109567","https://openalex.org/I4210121439"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Duncan MacCannell","raw_affiliation_strings":["National Center for Emerging and Zoonotic Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Emerging and Zoonotic Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia","institution_ids":["https://openalex.org/I1289490764","https://openalex.org/I4210121439"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042745262","display_name":"Xavier Didelot","orcid":"https://orcid.org/0000-0003-1885-500X","observed_orcids":["https://orcid.org/0000-0003-1885-500X"]},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Xavier Didelot","raw_affiliation_strings":["Department of Infectious Disease Epidemiology, Imperial College London, United Kingdom; and","Department of Infectious Disease Epidemiology, Imperial College London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Infectious Disease Epidemiology, Imperial College London, United Kingdom; and","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Infectious Disease Epidemiology, Imperial College London, United Kingdom","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051023013","display_name":"Dana Russell","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dana Russell","raw_affiliation_strings":["Division of Infectious Diseases, David Geffen School of Medicine, University of California, Los Angeles"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Infectious Diseases, David Geffen School of Medicine, University of California, Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059456070","display_name":"Zachary Rubin","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zachary Rubin","raw_affiliation_strings":["Division of Infectious Diseases, David Geffen School of Medicine, University of California, Los Angeles"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Infectious Diseases, David Geffen School of Medicine, University of California, Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028268383","display_name":"Romney M. Humphries","orcid":"https://orcid.org/0000-0002-6568-156X","observed_orcids":["https://orcid.org/0000-0002-6568-156X"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Romney Humphries","raw_affiliation_strings":["Pathology and LaboratoryMedicine, David Geffen School of Medicine, University of California, Los Angeles"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pathology and LaboratoryMedicine, David Geffen School of Medicine, University of California, Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4763,"currency":"USD","value_usd":4763},"apc_paid":null,"fwci":2.3373,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.8755338,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"64","issue":"7","first_page":"894","last_page":"901"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10195","display_name":"Antimicrobial Resistance in Staphylococcus","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11000","display_name":"Infection Control in Healthcare","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/carbapenem-resistant-klebsiella-pneumoniae","display_name":"carbapenem-resistant Klebsiella pneumoniae","score":0.9959999918937683},{"id":"https://openalex.org/keywords/blaoxa-232","display_name":"blaOXA-232","score":0.953000009059906},{"id":"https://openalex.org/keywords/oxa-232","display_name":"OXA-232","score":0.7039999961853027},{"id":"https://openalex.org/keywords/outbreak-investigation","display_name":"outbreak investigation","score":0.5080000162124634},{"id":"https://openalex.org/keywords/endoscopic-retrograde-cholangiopancreatography","display_name":"endoscopic retrograde cholangiopancreatography","score":0.9760000109672546},{"id":"https://openalex.org/keywords/molecular-clock","display_name":"molecular clock","score":0.6330000162124634},{"id":"https://openalex.org/keywords/single-nucleotide-variants","display_name":"single nucleotide variants","score":0.9229999780654907},{"id":"https://openalex.org/keywords/blactx-m-15","display_name":"blaCTX-M-15","score":0.9890000224113464},{"id":"https://openalex.org/keywords/aac-6-ib","display_name":"aac(6')-Ib","score":0.9520000219345093},{"id":"https://openalex.org/keywords/antimicrobial-resistance-genes","display_name":"antimicrobial resistance genes","score":0.6790000200271606},{"id":"https://openalex.org/keywords/nosocomial-transmission","display_name":"nosocomial transmission","score":0.6439999938011169},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"whole genome sequencing","score":0.7710000276565552}],"concepts":[{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.8119395971298218},{"id":"https://openalex.org/C2780416669","wikidata":"https://www.wikidata.org/wiki/Q418546","display_name":"Aztreonam","level":5,"score":0.637319803237915},{"id":"https://openalex.org/C2777058267","wikidata":"https://www.wikidata.org/wiki/Q132592","display_name":"Klebsiella pneumoniae","level":4,"score":0.616041362285614},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.5947142243385315},{"id":"https://openalex.org/C2776315533","wikidata":"https://www.wikidata.org/wiki/Q3241189","display_name":"Acinetobacter baumannii","level":4,"score":0.4477086067199707},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4437809884548187},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4391891658306122},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.42749056220054626},{"id":"https://openalex.org/C2776685102","wikidata":"https://www.wikidata.org/wiki/Q410897","display_name":"Carbapenem","level":3,"score":0.4255436956882477},{"id":"https://openalex.org/C97669555","wikidata":"https://www.wikidata.org/wiki/Q4118435","display_name":"Molecular epidemiology","level":4,"score":0.4202566146850586},{"id":"https://openalex.org/C157887575","wikidata":"https://www.wikidata.org/wiki/Q417216","display_name":"Insertion sequence","level":5,"score":0.41514381766319275},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.37579214572906494},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.355272114276886},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3230225443840027},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.2696819305419922},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26509717106819153},{"id":"https://openalex.org/C2777637488","wikidata":"https://www.wikidata.org/wiki/Q31856","display_name":"Pseudomonas aeruginosa","level":3,"score":0.2390780746936798},{"id":"https://openalex.org/C2779631663","wikidata":"https://www.wikidata.org/wiki/Q425152","display_name":"Imipenem","level":4,"score":0.22119608521461487},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.12988430261611938},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.10586842894554138},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.06087517738342285}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002760","descriptor_name":"Cholangiopancreatography, Endoscopic Retrograde","qualifier_ui":"Q000009","qualifier_name":"adverse effects","is_major_topic":true},{"descriptor_ui":"D003428","descriptor_name":"Cross Infection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004196","descriptor_name":"Disease Outbreaks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004789","descriptor_name":"Enzyme Activation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007710","descriptor_name":"Klebsiella Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D007710","descriptor_name":"Klebsiella Infections","qualifier_ui":"Q000635","qualifier_name":"transmission","is_major_topic":true},{"descriptor_ui":"D007711","descriptor_name":"Klebsiella pneumoniae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D007711","descriptor_name":"Klebsiella pneumoniae","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D007711","descriptor_name":"Klebsiella pneumoniae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015780","descriptor_name":"Carbapenems","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/cid/ciw876","doi":"https://doi.org/10.1093/cid/ciw876","is_oa":true,"landing_page_url":"https://doi.org/10.1093/cid/ciw876","pdf_url":"https://academic.oup.com/cid/article-pdf/64/7/894/14161491/ciw876.pdf","source":{"id":"https://openalex.org/S72350973","display_name":"Clinical Infectious Diseases","issn_l":"1058-4838","issn":["1058-4838","1537-6591"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Clinical Infectious Diseases","raw_type":"journal-article"},{"id":"pmid:28362935","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28362935","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Clinical infectious diseases : an official publication of the Infectious Diseases Society of America","raw_type":"Journal Article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt8v63k6v8","doi":null,"is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/8v63k6v8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Clinical Infectious Diseases, vol 64, iss 7","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/cid/ciw876","doi":"https://doi.org/10.1093/cid/ciw876","is_oa":true,"landing_page_url":"https://doi.org/10.1093/cid/ciw876","pdf_url":"https://academic.oup.com/cid/article-pdf/64/7/894/14161491/ciw876.pdf","source":{"id":"https://openalex.org/S72350973","display_name":"Clinical Infectious Diseases","issn_l":"1058-4838","issn":["1058-4838","1537-6591"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Clinical Infectious Diseases","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.9391000270843506,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[{"display_name":"Observational Study","id":"https://openalex.org/study-designs/observational-study"}],"awards":[{"id":"https://openalex.org/G3153323794","display_name":"A genealogical approach to tracking bacterial transmission","funder_award_id":"MR/N010760/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2591088537.pdf","grobid_xml":"https://content.openalex.org/works/W2591088537.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1946731500","https://openalex.org/W1952002293","https://openalex.org/W1984903487","https://openalex.org/W2008278287","https://openalex.org/W2030963168","https://openalex.org/W2032866129","https://openalex.org/W2061616855","https://openalex.org/W2076892753","https://openalex.org/W2096839791","https://openalex.org/W2113898837","https://openalex.org/W2117508830","https://openalex.org/W2132831416","https://openalex.org/W2145111808","https://openalex.org/W2162684799","https://openalex.org/W2164852757","https://openalex.org/W2169162748","https://openalex.org/W2170272276","https://openalex.org/W2198024071","https://openalex.org/W2259505867","https://openalex.org/W2273624252"],"related_works":["https://openalex.org/W2206386712","https://openalex.org/W4386031494","https://openalex.org/W2981470308","https://openalex.org/W3014447600","https://openalex.org/W2580691795","https://openalex.org/W4283640315","https://openalex.org/W2807056642","https://openalex.org/W3121365798","https://openalex.org/W3208317591","https://openalex.org/W2963423106"],"abstract_inverted_index":{"BACKGROUND:":[0],"Whole-genome":[1],"sequencing":[2],"(WGS)":[3],"is":[4],"an":[5,27,162],"emerging":[6],"and":[7,25,65,87,109,115,156,158,173,202],"powerful":[8],"technique":[9],"by":[10],"which":[11,150],"to":[12,23,36,73,154,179],"perform":[13],"epidemiological":[14],"studies":[15],"in":[16,152,177],"outbreak":[17,28,125,201,207],"situations.":[18],"METHODS:":[19],"WGS":[20,54],"was":[21,55,84,118],"used":[22],"identify":[24],"evaluate":[26],"of":[29,42,82,124,129,187,198],"OXA-232-expressing":[30],"carbapenem-resistant":[31],"Klebsiella":[32],"pneumoniae":[33],"(CRKP)":[34],"transmitted":[35],"16":[37],"patients":[38],"over":[39,195],"the":[40,74,91,113,122,145,169,185,192,196],"course":[41,197],"40":[43],"weeks":[44],"via":[45],"endoscopic":[46],"retrograde":[47],"cholangiopancreatography":[48],"procedures":[49],"at":[50,112,191],"a":[51,136,165,199],"single":[52],"institution.":[53],"performed":[56],"on":[57],"32":[58],"OXA-232":[59],"CRKP":[60],"isolates":[61,83,130],"(1-7":[62],"per":[63,99,101],"patient)":[64],"single-nucleotide":[66],"variants":[67],"(SNVs)":[68],"were":[69],"analyzed,":[70],"with":[71],"reference":[72,204],"index":[75],"patient's":[76],"isolate.":[77],"RESULTS:":[78],"Interhost":[79],"genetic":[80],"diversity":[81],"between":[85],"0":[86],"15":[88],"SNVs":[89],"during":[90],"outbreak;":[92],"molecular":[93],"clock":[94],"calculations":[95],"estimated":[96],"12.31":[97],"substitutions":[98],"genome":[100],"year":[102],"(95%":[103],"credibility":[104],"interval,":[105],"7.81-17.05).":[106],"Both":[107],"intra-":[108],"interpatient":[110],"diversification":[111],"plasmid":[114],"transposon":[116,146,170],"level":[117,194],"observed,":[119],"significantly":[120],"impacting":[121],"antibiogram":[123],"isolates.":[126],"The":[127],"majority":[128],"evaluated":[131],"(n":[132,141],"=":[133,142],"27)":[134],"harbored":[135],"blaCTX-M-15":[137],"gene,":[138,149],"but":[139],"some":[140],"5)":[143],"lacked":[144,168],"carrying":[147,171],"this":[148],"resulted":[151],"susceptibility":[153,178],"aztreonam":[155],"third-":[157],"fourth-generation":[159],"cephalosporins.":[160],"Similarly,":[161],"isolate":[163],"from":[164],"colonized":[166],"patient":[167],"rmtF":[172],"aac(6')lb":[174],"genes,":[175],"resulting":[176],"aminoglycosides.":[180],"CONCLUSIONS:":[181],"This":[182],"study":[183],"broadens":[184],"understanding":[186],"how":[188],"bacteria":[189],"diversify":[190],"genomic":[193],"defined":[200],"provides":[203],"for":[205],"future":[206],"investigations.":[208]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":8}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2017-03-03T00:00:00"}
