{"id":"https://openalex.org/W2586473496","doi":"https://doi.org/10.1155/2017/9272363","title":"Whole-Genome Characteristics and Polymorphic Analysis of Vietnamese Rice Landraces as a Comprehensive Information Resource for Marker-Assisted Selection","display_name":"Whole-Genome Characteristics and Polymorphic Analysis of Vietnamese Rice Landraces as a Comprehensive Information Resource for Marker-Assisted Selection","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2586473496","doi":"https://doi.org/10.1155/2017/9272363","mag":"2586473496","pmid":"https://pubmed.ncbi.nlm.nih.gov/28265566","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/5318636"},"language":"en","primary_location":{"id":"doi:10.1155/2017/9272363","doi":"https://doi.org/10.1155/2017/9272363","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/9272363","pdf_url":"http://downloads.hindawi.com/journals/ijg/2017/9272363.pdf","source":{"id":"https://openalex.org/S4210230380","display_name":"International Journal of Genomics","issn_l":"2314-436X","issn":["2314-436X","2314-4378"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869","https://openalex.org/P4310320595"],"host_organization_lineage_names":["Hindawi Publishing Corporation","Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Genomics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://downloads.hindawi.com/journals/ijg/2017/9272363.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046760994","display_name":"Hien Trinh","orcid":"https://orcid.org/0000-0002-7767-3153","observed_orcids":["https://orcid.org/0000-0002-7767-3153"]},"institutions":[{"id":"https://openalex.org/I70349855","display_name":"Vietnam Academy of Science and Technology","ror":"https://ror.org/02wsd5p50","country_code":"VN","type":"government","lineage":["https://openalex.org/I70349855"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Hien Trinh","raw_affiliation_strings":["Laboratory of Bioinformatics, Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam","institution_ids":["https://openalex.org/I70349855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062134714","display_name":"Khoa Truong Nguyen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210155593","display_name":"Agricultural Genetics Institute","ror":"https://ror.org/05sswkg52","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210155593"]},{"id":"https://openalex.org/I4210156679","display_name":"Vietnam Academy of Agricultural Sciences","ror":"https://ror.org/04q8wkj31","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210156679"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Khoa Truong Nguyen","raw_affiliation_strings":["Department of Genetic Engineering, Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Km2 Pham Van Dong, Tuliem, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetic Engineering, Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Km2 Pham Van Dong, Tuliem, Hanoi, Vietnam","institution_ids":["https://openalex.org/I4210155593","https://openalex.org/I4210156679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031593281","display_name":"Lam Van Nguyen","orcid":"https://orcid.org/0000-0001-5643-3479","observed_orcids":["https://orcid.org/0000-0001-5643-3479"]},"institutions":[{"id":"https://openalex.org/I70349855","display_name":"Vietnam Academy of Science and Technology","ror":"https://ror.org/02wsd5p50","country_code":"VN","type":"government","lineage":["https://openalex.org/I70349855"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Lam Van Nguyen","raw_affiliation_strings":["Laboratory of Bioinformatics, Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam","institution_ids":["https://openalex.org/I70349855"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Huy Quang Pham","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I70349855","display_name":"Vietnam Academy of Science and Technology","ror":"https://ror.org/02wsd5p50","country_code":"VN","type":"government","lineage":["https://openalex.org/I70349855"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Huy Quang Pham","raw_affiliation_strings":["Laboratory of Bioinformatics, Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam","institution_ids":["https://openalex.org/I70349855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007334257","display_name":"Can Thu Huong","orcid":"https://orcid.org/0000-0001-8720-7888","observed_orcids":["https://orcid.org/0000-0001-8720-7888"]},"institutions":[{"id":"https://openalex.org/I113306721","display_name":"Hiroshima University","ror":"https://ror.org/03t78wx29","country_code":"JP","type":"education","lineage":["https://openalex.org/I113306721"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Can Thu Huong","raw_affiliation_strings":["Graduate School for International Development and Cooperation, Hiroshima University, Hiroshima 739-8529, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School for International Development and Cooperation, Hiroshima University, Hiroshima 739-8529, Japan","institution_ids":["https://openalex.org/I113306721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102885730","display_name":"Tran Dang Xuan","orcid":"https://orcid.org/0000-0001-7103-5698","observed_orcids":["https://orcid.org/0000-0001-7103-5698"]},"institutions":[{"id":"https://openalex.org/I113306721","display_name":"Hiroshima University","ror":"https://ror.org/03t78wx29","country_code":"JP","type":"education","lineage":["https://openalex.org/I113306721"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tran Dang Xuan","raw_affiliation_strings":["Graduate School for International Development and Cooperation, Hiroshima University, Hiroshima 739-8529, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School for International Development and Cooperation, Hiroshima University, Hiroshima 739-8529, Japan","institution_ids":["https://openalex.org/I113306721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035359708","display_name":"La Hoang Anh","orcid":"https://orcid.org/0000-0002-6844-8296","observed_orcids":["https://orcid.org/0000-0002-6844-8296"]},"institutions":[{"id":"https://openalex.org/I113306721","display_name":"Hiroshima University","ror":"https://ror.org/03t78wx29","country_code":"JP","type":"education","lineage":["https://openalex.org/I113306721"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"La Hoang Anh","raw_affiliation_strings":["Graduate School for International Development and Cooperation, Hiroshima University, Hiroshima 739-8529, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School for International Development and Cooperation, Hiroshima University, Hiroshima 739-8529, Japan","institution_ids":["https://openalex.org/I113306721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044372059","display_name":"Mario C\u00e1ccamo","orcid":"https://orcid.org/0000-0002-6244-3048","observed_orcids":["https://orcid.org/0000-0002-6244-3048"]},"institutions":[{"id":"https://openalex.org/I144302072","display_name":"National Institute of Agricultural Botany","ror":"https://ror.org/010jx2260","country_code":"GB","type":"facility","lineage":["https://openalex.org/I144302072"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mario Caccamo","raw_affiliation_strings":["Genetics and Breeding, National Institute of Agricultural Botany, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetics and Breeding, National Institute of Agricultural Botany, Cambridge, UK","institution_ids":["https://openalex.org/I144302072"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112714582","display_name":"Sarah Ayling","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I144302072","display_name":"National Institute of Agricultural Botany","ror":"https://ror.org/010jx2260","country_code":"GB","type":"facility","lineage":["https://openalex.org/I144302072"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sarah Ayling","raw_affiliation_strings":["Genetics and Breeding, National Institute of Agricultural Botany, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetics and Breeding, National Institute of Agricultural Botany, Cambridge, UK","institution_ids":["https://openalex.org/I144302072"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087971664","display_name":"Nguyen Thuy Diep","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210155593","display_name":"Agricultural Genetics Institute","ror":"https://ror.org/05sswkg52","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210155593"]},{"id":"https://openalex.org/I4210156679","display_name":"Vietnam Academy of Agricultural Sciences","ror":"https://ror.org/04q8wkj31","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210156679"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Nguyen Thuy Diep","raw_affiliation_strings":["Department of Genetic Engineering, Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Km2 Pham Van Dong, Tuliem, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetic Engineering, Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Km2 Pham Van Dong, Tuliem, Hanoi, Vietnam","institution_ids":["https://openalex.org/I4210155593","https://openalex.org/I4210156679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072115923","display_name":"Cuong Nguyen","orcid":"https://orcid.org/0000-0002-1745-248X","observed_orcids":["https://orcid.org/0000-0002-1745-248X"]},"institutions":[{"id":"https://openalex.org/I70349855","display_name":"Vietnam Academy of Science and Technology","ror":"https://ror.org/02wsd5p50","country_code":"VN","type":"government","lineage":["https://openalex.org/I70349855"]}],"countries":["VN"],"is_corresponding":true,"raw_author_name":"Cuong Nguyen","raw_affiliation_strings":["Laboratory of Bioinformatics, Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam"],"raw_orcid":"https://orcid.org/0000-0002-1745-248X","affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam","institution_ids":["https://openalex.org/I70349855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035305741","display_name":"Khu\u1ea5t H\u1eefu Trung","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210155593","display_name":"Agricultural Genetics Institute","ror":"https://ror.org/05sswkg52","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210155593"]},{"id":"https://openalex.org/I4210156679","display_name":"Vietnam Academy of Agricultural Sciences","ror":"https://ror.org/04q8wkj31","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210156679"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Khuat Huu Trung","raw_affiliation_strings":["Department of Genetic Engineering, Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Km2 Pham Van Dong, Tuliem, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetic Engineering, Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Km2 Pham Van Dong, Tuliem, Hanoi, Vietnam","institution_ids":["https://openalex.org/I4210155593","https://openalex.org/I4210156679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048220705","display_name":"Tran Dang Khanh","orcid":"https://orcid.org/0000-0003-4426-7121","observed_orcids":["https://orcid.org/0000-0003-4426-7121"]},"institutions":[{"id":"https://openalex.org/I4210155593","display_name":"Agricultural Genetics Institute","ror":"https://ror.org/05sswkg52","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210155593"]},{"id":"https://openalex.org/I4210156679","display_name":"Vietnam Academy of Agricultural Sciences","ror":"https://ror.org/04q8wkj31","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210156679"]}],"countries":["VN"],"is_corresponding":true,"raw_author_name":"Tran Dang Khanh","raw_affiliation_strings":["Department of Genetic Engineering, Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Km2 Pham Van Dong, Tuliem, Hanoi, Vietnam"],"raw_orcid":"https://orcid.org/0000-0003-4426-7121","affiliations":[{"raw_affiliation_string":"Department of Genetic Engineering, Agricultural Genetics Institute, Vietnam Academy of Agricultural Sciences, Km2 Pham Van Dong, Tuliem, Hanoi, Vietnam","institution_ids":["https://openalex.org/I4210155593","https://openalex.org/I4210156679"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5048220705","https://openalex.org/A5072115923"],"corresponding_institution_ids":["https://openalex.org/I4210155593","https://openalex.org/I4210156679","https://openalex.org/I70349855"],"apc_list":{"value":2380,"currency":"USD","value_usd":2380},"apc_paid":{"value":2380,"currency":"USD","value_usd":2380},"fwci":0.7724,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.69256327,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":96},"biblio":{"volume":"2017","issue":null,"first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.002099999925121665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rice-landrace","display_name":"rice landraces","score":0.9860000014305115},{"id":"https://openalex.org/keywords/rice","display_name":"rice","score":0.8799999952316284},{"id":"https://openalex.org/keywords/indica-rice","display_name":"Indica rice","score":0.75},{"id":"https://openalex.org/keywords/japonica-rice","display_name":"Oryza sativa subsp. japonica","score":0.9990000128746033},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"whole genome sequencing","score":0.7829999923706055},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphisms","display_name":"single nucleotide polymorphisms","score":0.9480000138282776},{"id":"https://openalex.org/keywords/indels","display_name":"indels","score":0.9390000104904175},{"id":"https://openalex.org/keywords/phylogenetic-relationships","display_name":"phylogenetic relationships","score":0.8169999718666077},{"id":"https://openalex.org/keywords/blast-resistance","display_name":"blast resistance","score":0.7940000295639038},{"id":"https://openalex.org/keywords/marker-assisted-selection","display_name":"marker-assisted selection","score":0.9739999771118164},{"id":"https://openalex.org/keywords/rice-breeding","display_name":"rice breeding","score":0.6660000085830688}],"concepts":[{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.8659731149673462},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7864406108856201},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7567241191864014},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6026936173439026},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.599418044090271},{"id":"https://openalex.org/C2779409272","wikidata":"https://www.wikidata.org/wiki/Q1757789","display_name":"Japonica","level":2,"score":0.4609528183937073},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.43692561984062195},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.43371817469596863},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.42759907245635986},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32986462116241455},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3005228042602539},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.14231404662132263},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.08523362874984741},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.06655305624008179},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1155/2017/9272363","doi":"https://doi.org/10.1155/2017/9272363","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/9272363","pdf_url":"http://downloads.hindawi.com/journals/ijg/2017/9272363.pdf","source":{"id":"https://openalex.org/S4210230380","display_name":"International Journal of Genomics","issn_l":"2314-436X","issn":["2314-436X","2314-4378"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869","https://openalex.org/P4310320595"],"host_organization_lineage_names":["Hindawi Publishing Corporation","Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Genomics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:4192092","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5318636","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:28265566","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28265566","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of genomics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5318636","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC5318636/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Int J Genomics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:b9ed767d74894100aaf806520886a207","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/b9ed767d74894100aaf806520886a207","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Genomics, Vol 2017 (2017)","raw_type":"article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt2g00604k","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/2g00604k","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Genomics, vol 2017, iss 1","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1155/2017/9272363","doi":"https://doi.org/10.1155/2017/9272363","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/9272363","pdf_url":"http://downloads.hindawi.com/journals/ijg/2017/9272363.pdf","source":{"id":"https://openalex.org/S4210230380","display_name":"International Journal of Genomics","issn_l":"2314-436X","issn":["2314-436X","2314-4378"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869","https://openalex.org/P4310320595"],"host_organization_lineage_names":["Hindawi Publishing Corporation","Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Genomics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.9208999872207642}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309568","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2586473496.pdf","grobid_xml":"https://content.openalex.org/works/W2586473496.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1549154521","https://openalex.org/W1973413549","https://openalex.org/W1980316401","https://openalex.org/W1989972361","https://openalex.org/W2010948347","https://openalex.org/W2015528875","https://openalex.org/W2018241427","https://openalex.org/W2022603493","https://openalex.org/W2061616850","https://openalex.org/W2078393935","https://openalex.org/W2091169520","https://openalex.org/W2103950435","https://openalex.org/W2107233609","https://openalex.org/W2126933570","https://openalex.org/W2131748466","https://openalex.org/W2132229929","https://openalex.org/W2138098955","https://openalex.org/W2152586491","https://openalex.org/W2154180530","https://openalex.org/W2156622081","https://openalex.org/W2159077216","https://openalex.org/W2161861000","https://openalex.org/W2162883588","https://openalex.org/W2175948239","https://openalex.org/W2262691235","https://openalex.org/W4235874578"],"related_works":["https://openalex.org/W7097133250","https://openalex.org/W2162883588","https://openalex.org/W2126933570","https://openalex.org/W3195809072","https://openalex.org/W3083254170","https://openalex.org/W6938755007","https://openalex.org/W2772073586","https://openalex.org/W2153617502","https://openalex.org/W2272396526","https://openalex.org/W4283160245"],"abstract_inverted_index":{"Next":[0],"generation":[1],"sequencing":[2,23],"technologies":[3],"have":[4,47,91,96,139],"provided":[5],"numerous":[6],"opportunities":[7],"for":[8],"application":[9],"in":[10,155,167],"the":[11,22,55,125,133,137,144],"study":[12],"of":[13,27,40,64,102,117,120,127,152],"whole":[14],"plant":[15],"genomes.":[16,73],"In":[17],"this":[18],"study,":[19],"we":[20],"present":[21],"and":[24,71,77,85,87,115,157],"bioinformatic":[25],"analyses":[26],"five":[28],"typical":[29],"rice":[30,121,153,168],"landraces":[31,138],"including":[32],"threeindicaand":[33],"twojaponicawith":[34],"potential":[35],"blast":[36],"resistance.":[37],"A":[38],"total":[39],"688.4":[41],"million":[42,76],"100":[43,130],"bp":[44],"paired-end":[45],"reads":[46,65],"yielded":[48],"approximately":[49],"30-fold":[50],"coverage":[51],"to":[52,68,162],"compare":[53],"with":[54],"Nipponbare":[56],"reference":[57],"genome.":[58],"Among":[59],"them,":[60],"a":[61],"small":[62],"number":[63],"were":[66,109],"mapped":[67],"both":[69],"chromosomes":[70,112],"organellar":[72],"Over":[74],"two":[75],"eight":[78],"hundred":[79],"thousand":[80],"single":[81],"nucleotide":[82],"polymorphisms":[83],"(SNPs)":[84],"insertions":[86],"deletions":[88],"(InDels)":[89],"inindicaandjaponicalines":[90],"been":[92,140],"determined,":[93],"which":[94],"potentially":[95],"significant":[97,159],"impacts":[98],"on":[99,111,124],"multiple":[100],"transcripts":[101],"genes.":[103],"SNP":[104],"deserts,":[105],"contiguous":[106],"SNP-low":[107],"regions,":[108],"found":[110],"1,":[113],"4,":[114],"5":[116],"all":[118],"genomes":[119,154],"examined.":[122],"Based":[123],"distribution":[126],"SNPs":[128],"per":[129],"kilobase":[131],"pairs,":[132],"phylogenetic":[134],"relationships":[135],"among":[136],"constructed.":[141],"This":[142],"is":[143],"first":[145],"step":[146],"towards":[147],"revealing":[148],"several":[149],"salient":[150],"features":[151],"Vietnam":[156],"providing":[158],"information":[160],"resources":[161],"further":[163],"marker-assisted":[164],"selection":[165],"(MAS)":[166],"breeding":[169],"programs.":[170]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2017-02-17T00:00:00"}
