{"id":"https://openalex.org/W2584837296","doi":null,"title":"Transposable elements in teleost fish: In silico exploration of TE activity, diversity and abundance across 74 teleost fish genomes","display_name":"Transposable elements in teleost fish: In silico exploration of TE activity, diversity and abundance across 74 teleost fish genomes","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2584837296","mag":"2584837296"},"language":"en","primary_location":{"id":"pmh:oai:www.duo.uio.no:10852/52365","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/10852/52365","pdf_url":null,"source":{"id":"https://openalex.org/S7407064446","display_name":"NORA - Norwegian Open Research Archives","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/masterThesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10852/52365","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056618299","display_name":"William Brynildsen","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"William Brynildsen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5056618299"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transposable-elements","display_name":"transposable elements","score":1.0},{"id":"https://openalex.org/keywords/teleosts","display_name":"teleosts","score":0.9819999933242798},{"id":"https://openalex.org/keywords/dna-transposons","display_name":"DNA transposons","score":0.843999981880188},{"id":"https://openalex.org/keywords/genome-size","display_name":"genome size","score":0.6840000152587891},{"id":"https://openalex.org/keywords/phylogenetic-signal","display_name":"phylogenetic signal","score":0.7850000262260437},{"id":"https://openalex.org/keywords/genome-annotation","display_name":"genome annotation","score":0.5529999732971191},{"id":"https://openalex.org/keywords/genomic-rearrangements","display_name":"genome rearrangement","score":0.6949999928474426}],"concepts":[{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.8187345266342163},{"id":"https://openalex.org/C2909208804","wikidata":"https://www.wikidata.org/wiki/Q127282","display_name":"Fish <Actinopterygii>","level":2,"score":0.818138599395752},{"id":"https://openalex.org/C77077793","wikidata":"https://www.wikidata.org/wiki/Q336019","display_name":"Abundance (ecology)","level":2,"score":0.646253764629364},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6292423605918884},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.6173126101493835},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5915354490280151},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5670408010482788},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.5063682794570923},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4139835238456726},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.34454143047332764},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2330852746963501},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17620447278022766},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.04973560571670532},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:www.duo.uio.no:10852/52365","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/10852/52365","pdf_url":null,"source":{"id":"https://openalex.org/S7407064446","display_name":"NORA - Norwegian Open Research Archives","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/masterThesis"},{"id":"mag:2584837296","doi":null,"is_oa":false,"landing_page_url":"https://www.duo.uio.no/handle/10852/52365","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:www.duo.uio.no:10852/52365","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/10852/52365","pdf_url":null,"source":{"id":"https://openalex.org/S7407064446","display_name":"NORA - Norwegian Open Research Archives","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/masterThesis"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2263391408","https://openalex.org/W2981796144","https://openalex.org/W4387312183","https://openalex.org/W2152222332","https://openalex.org/W2793529215","https://openalex.org/W7120309081","https://openalex.org/W2995761200","https://openalex.org/W3088916795","https://openalex.org/W2899347162","https://openalex.org/W4415944018"],"abstract_inverted_index":{"Transposable":[0],"elements":[1],"(TEs)":[2],"comprise":[3],"a":[4,51,68,79,99,187,192,205,217,224,283,303],"major":[5],"proportion":[6],"of":[7,15,28,37,54,81,91,103,106,110,181,191,196,212,254,274,282,292],"most":[8],"large":[9],"eukaryotic":[10],"genomes.":[11,170],"Through":[12],"different":[13,134,183],"mechanisms":[14],"transposition,":[16],"TEs":[17,29],"can":[18],"move":[19],"within":[20,64,167],"genomes":[21,49,90,180,293],"and":[22,78,120,150,165,230,259,309],"cause":[23],"genomic":[24],"rearrangements.":[25],"Large-scale":[26],"studies":[27],"have":[30,56,94,137],"recently":[31,193],"become":[32],"possible":[33],"through":[34],"the":[35,45,89,115,179,197,213,232,252,280,289],"advent":[36],"high-throughput":[38],"sequencing.":[39],"Thus,":[40],"unprecedented":[41],"opportunities":[42],"for":[43,209],"uncovering":[44],"TE":[46,121,145,162,214,228,255,263,275,310],"compositions":[47],"in":[48,76,216,227,239,267,288],"from":[50],"vast":[52,74],"range":[53],"species":[55],"presented":[57],"itself.":[58],"Teleost":[59],"fish":[60,93,136,169],"are":[61,248,312],"an":[62,210,272],"infraclass":[63],"ray-finned":[65],"fishes,":[66],"with":[67,86,142],"long":[69],"evolutionary":[70,219],"history,":[71],"that":[72,231,244,261,294],"display":[73],"diversity":[75,253],"morphology":[77],"variety":[80],"life":[82],"history":[83],"strategies.":[84],"Compared":[85],"other":[87],"vertebrates,":[88],"teleost":[92,135,154,168,268],"been":[95,124,140],"shown":[96],"to":[97,126,144,160,177,204],"inhabit":[98],"highly":[100],"diverse":[101],"composition":[102],"TEs,":[104,250],"many":[105],"which":[107],"show":[108],"signs":[109],"recent":[111,262],"activity.":[112],"In":[113,270],"addition,":[114,271],"link":[116],"between":[117,306],"genome":[118,155,307],"size":[119,308],"abundances":[122],"has":[123],"indicated":[125],"be":[127],"particularly":[128],"strong.":[129],"However,":[130],"less":[131,296],"than":[132,297],"20":[133,298],"so":[138],"far":[139],"analyzed":[141],"regard":[143],"content.":[146],"Using":[147],"nine":[148],"available":[149],"65":[151],"newly":[152],"sequenced":[153],"assemblies,":[156],"this":[157,241],"project":[158],"aimed":[159],"explore":[161],"diversity,":[163],"abundance":[164,311],"activities":[166],"A":[171],"custom":[172],"computational":[173],"pipeline":[174],"was":[175],"devised":[176],"annotate":[178],"74":[182],"teleostean":[184],"species,":[185],"including":[186],"more":[188],"extensive":[189],"investigation":[190,211,273],"improved":[194],"version":[195],"Atlantic":[198],"cod":[199],"genome.":[200],"Results":[201],"were":[202],"coupled":[203],"time-calibrated":[206],"phylogenetic":[207,236,285],"tree":[208],"data":[215],"proper":[218],"context.":[220],"The":[221],"study":[222,242],"revealed":[223,279],"substantial":[225],"variation":[226,233],"content":[229],"mostly":[234],"follows":[235],"patterns.":[237],"Unique":[238],"scale,":[240],"uncovers":[243],"i)":[245],"DNA":[246],"transposons":[247],"predominant":[249],"ii)":[251],"superfamilies/families":[256],"is":[257,265],"high":[258],"iii)":[260],"activity":[264,276],"common":[266],"fish.":[269],"over":[277],"time":[278],"presence":[281],"strong":[284,304],"signal":[286],"present":[287],"repeat":[290],"landscapes":[291],"diverged":[295],"million":[299],"years":[300],"ago.":[301],"Last,":[302],"correlation":[305],"indicated.":[313]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-09-03T10:48:47.769340","created_date":"2017-02-10T00:00:00"}
