{"id":"https://openalex.org/W2582642028","doi":"https://doi.org/10.1093/bioinformatics/btx039","title":"Dscam1 web server: online prediction of Dscam1 self- and hetero-affinity","display_name":"Dscam1 web server: online prediction of Dscam1 self- and hetero-affinity","publication_year":2017,"publication_date":"2017-01-30","ids":{"openalex":"https://openalex.org/W2582642028","doi":"https://doi.org/10.1093/bioinformatics/btx039","mag":"2582642028","pmid":"https://pubmed.ncbi.nlm.nih.gov/28137710"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx039","doi":"https://doi.org/10.1093/bioinformatics/btx039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx039","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/12/1879/25155571/btx039.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/12/1879/25155571/btx039.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004394877","display_name":"Simone Marini","orcid":"https://orcid.org/0000-0002-5704-3533","observed_orcids":["https://orcid.org/0000-0002-5704-3533"]},"institutions":[{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":"JP","type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Simone Marini","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan","institution_ids":["https://openalex.org/I4399598384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057025004","display_name":"Nelson Nazzicari","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210125105","display_name":"Consiglio per la ricerca in agricoltura e l\u2019analisi dell\u2019economia agraria","ror":"https://ror.org/0327f2m07","country_code":"IT","type":"government","lineage":["https://openalex.org/I4210125105"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Nelson Nazzicari","raw_affiliation_strings":["Council for Agricultural Research and Economics (CREA), Research Centre for Fodder Crops and Dairy Productions, Lodi, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Council for Agricultural Research and Economics (CREA), Research Centre for Fodder Crops and Dairy Productions, Lodi, Italy","institution_ids":["https://openalex.org/I4210125105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087793813","display_name":"Filippo Biscarini","orcid":"https://orcid.org/0000-0002-3901-2354","observed_orcids":["https://orcid.org/0000-0002-3901-2354"]},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN","IT"],"is_corresponding":false,"raw_author_name":"Filippo Biscarini","raw_affiliation_strings":["Department of Bioinformatics and Biostatistics, PTP Science Park, Lodi, Italy","Faculty of Bioscience and Technology for Food, Agriculture and Environment, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Biostatistics, PTP Science Park, Lodi, Italy","institution_ids":["https://openalex.org/I2799613648"]},{"raw_affiliation_string":"Faculty of Bioscience and Technology for Food, Agriculture and Environment, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111892704","display_name":"Guang-Zhong Wang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guang-Zhong Wang","raw_affiliation_strings":["Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004394877","https://openalex.org/A5111892704"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106477","https://openalex.org/I4399598384"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.1337,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.41845301,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"33","issue":"12","first_page":"1879","last_page":"1880"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12061","display_name":"Axon Guidance and Neuronal Signaling","score":0.45210000872612,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12061","display_name":"Axon Guidance and Neuronal Signaling","score":0.45210000872612,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.2029999941587448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.08160000294446945,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dscam1","display_name":"Dscam1","score":0.9959999918937683},{"id":"https://openalex.org/keywords/homodimerization","display_name":"homodimerization","score":0.6890000104904175},{"id":"https://openalex.org/keywords/cell-surface-proteins","display_name":"cell surface proteins","score":0.6039999723434448},{"id":"https://openalex.org/keywords/protein-protein-interaction-prediction","display_name":"protein-protein interaction prediction","score":0.6420000195503235},{"id":"https://openalex.org/keywords/web-server","display_name":"web server","score":0.6029999852180481}],"concepts":[{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7850135564804077},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5737040638923645},{"id":"https://openalex.org/C138744977","wikidata":"https://www.wikidata.org/wiki/Q5132438","display_name":"Clickstream","level":5,"score":0.5496469736099243},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.42580270767211914},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.42149531841278076},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37043067812919617},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33451876044273376},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3072829246520996},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3050554692745209},{"id":"https://openalex.org/C127613066","wikidata":"https://www.wikidata.org/wiki/Q557770","display_name":"Web API","level":4,"score":0.2790289521217346},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.17582133412361145},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1668633222579956}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015815","descriptor_name":"Cell Adhesion Molecules","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019006","descriptor_name":"Neural Cell Adhesion Molecules","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D055503","descriptor_name":"Protein Multimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btx039","doi":"https://doi.org/10.1093/bioinformatics/btx039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx039","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/12/1879/25155571/btx039.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28137710","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28137710","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx039","doi":"https://doi.org/10.1093/bioinformatics/btx039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx039","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/12/1879/25155571/btx039.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1023025697","display_name":"\u30c7\u30fc\u30bf\u878d\u5408\u306b\u3088\u308b\u30bf\u30f3\u30d1\u30af\u8cea\u5207\u65ad\u89e3\u6790\u304a\u3088\u3073\u75be\u60a3\u3068\u306e\u95a2\u9023\u6027\u767a\u898b","funder_award_id":"15F15788","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1343698379","display_name":null,"funder_award_id":"2016 YFC1303100","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G4328728285","display_name":null,"funder_award_id":"2016YFC0901700","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7326055321","display_name":null,"funder_award_id":"2016YFC1303101","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2582642028.pdf","grobid_xml":"https://content.openalex.org/works/W2582642028.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W2034070267","https://openalex.org/W2104005292","https://openalex.org/W2152438166","https://openalex.org/W2160237699"],"related_works":["https://openalex.org/W4244903021","https://openalex.org/W2401478493","https://openalex.org/W2064634146","https://openalex.org/W2012537084","https://openalex.org/W7099841943","https://openalex.org/W2558476174","https://openalex.org/W7043136839","https://openalex.org/W4378471523","https://openalex.org/W2165745599","https://openalex.org/W2346940354"],"abstract_inverted_index":{"MOTIVATION:":[0],"Formation":[1],"of":[2,19,32,60,90,99,109,111],"homodimers":[3],"by":[4],"identical":[5],"Dscam1":[6,22,76,82,91,100,123],"protein":[7,57],"isomers":[8],"on":[9],"cell":[10,44],"surface":[11,45],"is":[12,126,135],"the":[13,17,30,97,107,117],"key":[14],"factor":[15],"for":[16,51,88],"self-avoidance":[18],"growing":[20],"neurites.":[21],"immense":[23],"diversity":[24],"has":[25],"a":[26],"critical":[27],"role":[28],"in":[29],"formation":[31],"arthropod":[33],"neuronal":[34],"circuit,":[35],"showing":[36],"unique":[37],"evolutionary":[38],"properties":[39],"when":[40],"compared":[41],"to":[42,79,115],"other":[43],"proteins.":[46],"Experimental":[47],"measures":[48],"are":[49,148],"available":[50,128,136,149],"89":[52],"self-binding":[53],"and":[54,66,84,102],"1722":[55],"hetero-binding":[56],"samples,":[58],"out":[59],"more":[61],"than":[62],"19":[63],"thousands":[64],"(self-binding)":[65],"350":[67],"millions":[68,110],"(hetero-binding)":[69],"possible":[70,112],"isomer":[71,113],"combinations.":[72],"RESULTS:":[73],"We":[74],"developed":[75],"Web":[77,124,132],"Server":[78,125],"quickly":[80],"predict":[81],"self-":[83],"hetero-":[85],"binding":[86],"affinity":[87,101],"batches":[89],"isomers.":[92],"The":[93],"server":[94,133],"can":[95],"help":[96,103],"study":[98],"researchers":[104],"navigate":[105],"through":[106],"tens":[108],"combinations":[114],"isolate":[116],"strong-binding":[118],"ones.":[119],"AVAILABILITY":[120],"AND":[121],"IMPLEMENTATION:":[122],"freely":[127],"at:":[129],"http://bioinformatics.tecnoparco.org/Dscam1-webserver":[130],".":[131,139],"code":[134],"at":[137,150],"https://gitlab.com/ne1s0n/Dscam1-binding":[138],"CONTACT:":[140],"simone.marini@unipv.it":[141],"or":[142],"guangzhong.wang@picb.ac.cn.":[143],"SUPPLEMENTARY":[144],"INFORMATION:":[145],"Supplementary":[146],"data":[147],"Bioinformatics":[151],"online.":[152]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2017-02-03T00:00:00"}