{"id":"https://openalex.org/W2526763554","doi":"https://doi.org/10.1093/bioinformatics/btw630","title":"Pro54DB: a database for experimentally verified sigma-54 promoters","display_name":"Pro54DB: a database for experimentally verified sigma-54 promoters","publication_year":2016,"publication_date":"2016-09-29","ids":{"openalex":"https://openalex.org/W2526763554","doi":"https://doi.org/10.1093/bioinformatics/btw630","mag":"2526763554","pmid":"https://pubmed.ncbi.nlm.nih.gov/28171531"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw630","doi":"https://doi.org/10.1093/bioinformatics/btw630","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw630","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/467/49037578/bioinformatics_33_3_467.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/467/49037578/bioinformatics_33_3_467.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113785809","display_name":"Zhi-Yong Liang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi-Yong Liang","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102313397","display_name":"Hong-Yan Lai","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong-Yan Lai","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101483765","display_name":"Huan Yang","orcid":"https://orcid.org/0000-0001-8197-1041","observed_orcids":["https://orcid.org/0000-0001-8197-1041","https://orcid.org/0009-0001-9504-190X"]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan Yang","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002816820","display_name":"Chang-Jian Zhang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chang-Jian Zhang","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101757183","display_name":"Hui Qiong Yang","orcid":"https://orcid.org/0000-0001-7122-1212","observed_orcids":["https://orcid.org/0000-0001-7122-1212"]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Yang","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101855397","display_name":"Huanhuan Y. Wei","orcid":"https://orcid.org/0000-0002-6481-5407","observed_orcids":["https://orcid.org/0000-0002-6481-5407"]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan-Huan Wei","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064202323","display_name":"Xin-Xin Chen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin-Xin Chen","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102807822","display_name":"Ya-Wei Zhao","orcid":"https://orcid.org/0000-0003-1827-6577","observed_orcids":["https://orcid.org/0000-0003-1827-6577"]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ya-Wei Zhao","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zhen-Dong Su","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen-Dong Su","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100981616","display_name":"Li Wen-Chao","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen-Chao Li","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016919644","display_name":"En-Ze Deng","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"En-Ze Deng","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043530440","display_name":"Hua Tang","orcid":"https://orcid.org/0000-0001-6728-4544","observed_orcids":["https://orcid.org/0000-0001-6728-4544"]},"institutions":[{"id":"https://openalex.org/I3017480383","display_name":"Southwest Medical University","ror":"https://ror.org/00g2rqs52","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I3017480383"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hua Tang","raw_affiliation_strings":["Department of Pathophysiology, Southwest Medical University, Luzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathophysiology, Southwest Medical University, Luzhou, China","institution_ids":["https://openalex.org/I3017480383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344463","display_name":"Wei Chen","orcid":"https://orcid.org/0000-0002-6857-7696","observed_orcids":["https://orcid.org/0000-0002-6857-7696"]},"institutions":[{"id":"https://openalex.org/I137506752","display_name":"North China University of Science and Technology","ror":"https://ror.org/04z4wmb81","country_code":"CN","type":"education","lineage":["https://openalex.org/I137506752"]},{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Chen","raw_affiliation_strings":["Department of Physics, School of Sciences, Center for Genomics and Computational Biology, North China University of Science and Technology, Tangshan, China","Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, School of Sciences, Center for Genomics and Computational Biology, North China University of Science and Technology, Tangshan, China","institution_ids":["https://openalex.org/I137506752"]},{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041539298","display_name":"Hao Lin","orcid":"https://orcid.org/0000-0001-6265-2862","observed_orcids":["https://orcid.org/0000-0001-6265-2862","https://orcid.org/0009-0009-1603-2772","https://orcid.org/0009-0003-0533-1298"]},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hao Lin","raw_affiliation_strings":["Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5041539298","https://openalex.org/A5100344463"],"corresponding_institution_ids":["https://openalex.org/I137506752","https://openalex.org/I150229711"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":17.4518,"has_fulltext":true,"cited_by_count":112,"citation_normalized_percentile":{"value":0.9944062,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"33","issue":"3","first_page":"467","last_page":"469"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9429000020027161,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9429000020027161,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.02759999968111515,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.02410000003874302,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prokaryotic-gene-regulation","display_name":"prokaryotic gene regulation","score":0.7570000290870667},{"id":"https://openalex.org/keywords/transcriptional-regulation","display_name":"transcriptional regulation","score":0.7860000133514404}],"concepts":[{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.9421609044075012},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6122949719429016},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5759539604187012},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.48140811920166016},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46568670868873596},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4481993615627289},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.41403093934059143},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36676162481307983},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3372664153575897},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.24149814248085022},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051877","descriptor_name":"RNA Polymerase Sigma 54","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btw630","doi":"https://doi.org/10.1093/bioinformatics/btw630","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw630","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/467/49037578/bioinformatics_33_3_467.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28171531","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28171531","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw630","doi":"https://doi.org/10.1093/bioinformatics/btw630","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw630","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/467/49037578/bioinformatics_33_3_467.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1124692542","display_name":null,"funder_award_id":"11ZB122","funder_id":"https://openalex.org/F4320333337","funder_display_name":"Applied Basic Research Program of Sichuan Province"},{"id":"https://openalex.org/G1479285082","display_name":null,"funder_award_id":"2015JY0100","funder_id":"https://openalex.org/F4320333337","funder_display_name":"Applied Basic Research Program of Sichuan Province"},{"id":"https://openalex.org/G1573984130","display_name":null,"funder_award_id":"ZYGX2015J144].","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2731577396","display_name":null,"funder_award_id":"ZYGX2015Z006","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2984776345","display_name":null,"funder_award_id":"JP201502","funder_id":"https://openalex.org/F4320333337","funder_display_name":"Applied Basic Research Program of Sichuan Province"},{"id":"https://openalex.org/G3036545100","display_name":null,"funder_award_id":"ZYGX2015J144","funder_id":"https://openalex.org/F4320333337","funder_display_name":"Applied Basic Research Program of Sichuan Province"},{"id":"https://openalex.org/G3268523681","display_name":null,"funder_award_id":"11ZB122","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3619587634","display_name":null,"funder_award_id":"LZ-LY-45","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3809783077","display_name":null,"funder_award_id":"LZ-LY-45","funder_id":"https://openalex.org/F4320333337","funder_display_name":"Applied Basic Research Program of Sichuan Province"},{"id":"https://openalex.org/G5450358843","display_name":null,"funder_award_id":"JP201502","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5780849757","display_name":null,"funder_award_id":"2015M582533","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G6702465981","display_name":null,"funder_award_id":"2015JY0100","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7294016907","display_name":null,"funder_award_id":"BJ2014028","funder_id":"https://openalex.org/F4320333337","funder_display_name":"Applied Basic Research Program of Sichuan Province"},{"id":"https://openalex.org/G7447999339","display_name":null,"funder_award_id":"No. 2015M582533","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G7929907189","display_name":null,"funder_award_id":"ZYGX2015Z006","funder_id":"https://openalex.org/F4320333337","funder_display_name":"Applied Basic Research Program of Sichuan Province"},{"id":"https://openalex.org/G8653344864","display_name":null,"funder_award_id":"BJ2014028","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320322970","display_name":"Education Department of Sichuan Province","ror":"https://ror.org/05s1c4z27"},{"id":"https://openalex.org/F4320333337","display_name":"Applied Basic Research Program of Sichuan Province","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2526763554.pdf","grobid_xml":"https://content.openalex.org/works/W2526763554.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1500280355","https://openalex.org/W1906342810","https://openalex.org/W1936991984","https://openalex.org/W1943648727","https://openalex.org/W1971866858","https://openalex.org/W2003772564","https://openalex.org/W2098115980","https://openalex.org/W2101292724","https://openalex.org/W2124266758","https://openalex.org/W2157378179","https://openalex.org/W2232370058","https://openalex.org/W7073908414"],"related_works":["https://openalex.org/W4406116043","https://openalex.org/W2548356687","https://openalex.org/W2124266758","https://openalex.org/W2156050394","https://openalex.org/W3127836515","https://openalex.org/W2767519918","https://openalex.org/W7001273309","https://openalex.org/W2790788997","https://openalex.org/W1558304085","https://openalex.org/W2765171212"],"abstract_inverted_index":{"Summary:":[0],"In":[1,67,99],"prokaryotes,":[2],"the":[3,21,63,100,142],"\u03c354":[4,40,78,97,108],"promoters":[5,41,109],"are":[6,17,42],"unique":[7],"regulatory":[8,50],"elements":[9],"and":[10,25,28,34,55,74,82,131,135],"have":[11],"attracted":[12],"much":[13],"attention":[14],"because":[15],"they":[16],"in":[18,30,52,114,127],"charge":[19],"of":[20,23,48,59,96,129],"transcription":[22,54],"carbon":[24],"nitrogen-related":[26],"genes":[27,60,113],"participate":[29],"numerous":[31],"ancillary":[32],"processes":[33],"environmental":[35],"responses.":[36],"All":[37],"findings":[38],"on":[39,141],"favorable":[43],"for":[44,77,125],"a":[45,80],"better":[46],"understanding":[47],"their":[49],"mechanisms":[51],"gene":[53],"an":[56,71],"accurate":[57],"discovery":[58],"missed":[61],"by":[62],"wet":[64],"experimental":[65],"evidences.":[66],"order":[68],"to":[69,93],"provide":[70],"up-to-date,":[72],"interactive":[73],"extensible":[75],"database":[76,85],"promoter,":[79],"free":[81],"easy":[83],"accessed":[84],"called":[86],"Pro54DB":[87,137],"(\u03c354":[88],"promoter":[89],"database)":[90],"was":[91],"built":[92],"collect":[94],"information":[95],"promoter.":[98],"current":[101],"version,":[102],"it":[103],"has":[104],"stored":[105],"210":[106],"experimental-confirmed":[107],"with":[110,146],"297":[111],"regulated":[112],"43":[115],"species":[116],"manually":[117],"extracted":[118],"from":[119],"133":[120],"publications,":[121],"which":[122],"is":[123,138],"helpful":[124],"researchers":[126],"fields":[128],"bioinformatics":[130],"molecular":[132],"biology.":[133],"Availability":[134],"Implementation:":[136],"freely":[139],"available":[140],"web":[143],"at":[144],"http://lin.uestc.edu.cn/database/pro54db":[145],"all":[147],"major":[148],"browsers":[149],"supported.":[150],"Contacts:":[151],"greatchen@ncst.edu.cn":[152],"or":[153],"hlin@uestc.edu.cn":[154]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":21},{"year":2018,"cited_by_count":37},{"year":2017,"cited_by_count":7}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-10-07T00:00:00"}
