{"id":"https://openalex.org/W2516129055","doi":"https://doi.org/10.1016/j.tim.2016.08.004","title":"Microbial Genomics of Ancient Plagues and Outbreaks","display_name":"Microbial Genomics of Ancient Plagues and Outbreaks","publication_year":2016,"publication_date":"2016-09-08","ids":{"openalex":"https://openalex.org/W2516129055","doi":"https://doi.org/10.1016/j.tim.2016.08.004","mag":"2516129055","pmid":"https://pubmed.ncbi.nlm.nih.gov/27618404"},"language":"en","primary_location":{"id":"doi:10.1016/j.tim.2016.08.004","doi":"https://doi.org/10.1016/j.tim.2016.08.004","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.tim.2016.08.004","pdf_url":null,"source":{"id":"https://openalex.org/S587692","display_name":"Trends in Microbiology","issn_l":"0966-842X","issn":["0966-842X","1878-4380"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-2","ki-jl-1","medline","norway-1","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Trends in Microbiology","raw_type":"journal-article"},"volume":null,"type":"review","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041001443","display_name":"Cheryl P. Andam","orcid":"https://orcid.org/0000-0003-4428-0924","observed_orcids":["https://orcid.org/0000-0003-4428-0924"]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I161057412","display_name":"University of New Hampshire","ror":"https://ror.org/01rmh9n78","country_code":"US","type":"education","lineage":["https://openalex.org/I161057412"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cheryl P. Andam","raw_affiliation_strings":["Harvard T. H. Chan School of Public Health, Department of Epidemiology, Boston, MA 02115, USA; University of New Hampshire, Department of Molecular, Cellular and Biomedical Sciences, Durham, NH 03824, USA. Electronic address: cheryl.andam@unh.edu","Harvard T. H. Chan School of Public Health, Department of Epidemiology, Boston, MA 02115, USA","University of New Hampshire, Department of Molecular, Cellular and Biomedical Sciences, Durham, NH 03824, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard T. H. Chan School of Public Health, Department of Epidemiology, Boston, MA 02115, USA; University of New Hampshire, Department of Molecular, Cellular and Biomedical Sciences, Durham, NH 03824, USA. Electronic address: cheryl.andam@unh.edu","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I161057412"]},{"raw_affiliation_string":"Harvard T. H. Chan School of Public Health, Department of Epidemiology, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"University of New Hampshire, Department of Molecular, Cellular and Biomedical Sciences, Durham, NH 03824, USA","institution_ids":["https://openalex.org/I161057412"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012355338","display_name":"Colin J. Worby","orcid":"https://orcid.org/0000-0002-9132-7249","observed_orcids":["https://orcid.org/0000-0002-9132-7249"]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Colin J. Worby","raw_affiliation_strings":["Harvard T. H. Chan School of Public Health, Department of Epidemiology, Boston, MA 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard T. H. Chan School of Public Health, Department of Epidemiology, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054770483","display_name":"Qiuzhi Chang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiuzhi Chang","raw_affiliation_strings":["Harvard T. H. Chan School of Public Health, Department of Epidemiology, Boston, MA 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard T. H. Chan School of Public Health, Department of Epidemiology, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080590846","display_name":"Michael G. Campana","orcid":"https://orcid.org/0000-0003-0461-6462","observed_orcids":["https://orcid.org/0000-0003-0461-6462"]},"institutions":[{"id":"https://openalex.org/I2800056074","display_name":"Smithsonian Conservation Biology Institute","ror":"https://ror.org/04hnzva96","country_code":"US","type":"facility","lineage":["https://openalex.org/I103187081","https://openalex.org/I2800056074"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Michael G. Campana","raw_affiliation_strings":["Smithsonian Conservation Biology Institute, Center for Conservation Genomics, 3001 Connecticut Avenue NW, Washington, DC 20008, USA. Electronic address: campanam@si.edu","Smithsonian Conservation Biology Institute, Center for Conservation Genomics, 3001 Connecticut Avenue NW, Washington, DC 20008, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Smithsonian Conservation Biology Institute, Center for Conservation Genomics, 3001 Connecticut Avenue NW, Washington, DC 20008, USA. Electronic address: campanam@si.edu","institution_ids":["https://openalex.org/I2800056074"]},{"raw_affiliation_string":"Smithsonian Conservation Biology Institute, Center for Conservation Genomics, 3001 Connecticut Avenue NW, Washington, DC 20008, USA","institution_ids":["https://openalex.org/I2800056074"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5041001443","https://openalex.org/A5080590846"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I161057412","https://openalex.org/I2800056074"],"apc_list":{"value":7030,"currency":"USD","value_usd":7030},"apc_paid":null,"fwci":4.2766,"has_fulltext":false,"cited_by_count":77,"citation_normalized_percentile":{"value":0.935,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"24","issue":"12","first_page":"978","last_page":"990"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13409","display_name":"Paleopathology and ancient diseases","score":0.8974999785423279,"subfield":{"id":"https://openalex.org/subfields/1204","display_name":"Archeology (arts and humanities)"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T13409","display_name":"Paleopathology and ancient diseases","score":0.8974999785423279,"subfield":{"id":"https://openalex.org/subfields/1204","display_name":"Archeology (arts and humanities)"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12232","display_name":"Yersinia bacterium, plague, ectoparasites research","score":0.08990000188350677,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.0019000000320374966,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbial-genomics","display_name":"microbial genomics","score":0.9290000200271606},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"tuberculosis","score":0.8069999814033508},{"id":"https://openalex.org/keywords/leprosy","display_name":"leprosy","score":0.9990000128746033},{"id":"https://openalex.org/keywords/plague-etiology","display_name":"plague etiology","score":0.6669999957084656},{"id":"https://openalex.org/keywords/pathogen-evolution","display_name":"pathogen evolution","score":0.8600000143051147},{"id":"https://openalex.org/keywords/archaeological-find","display_name":"archaeological finds","score":0.5009999871253967},{"id":"https://openalex.org/keywords/virulence","display_name":"virulence","score":0.4880000054836273}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8737537264823914},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6629119515419006},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.5112531185150146},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4751070439815521},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3560711145401001},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2711808681488037},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2708175778388977},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.17501240968704224},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09620273113250732}],"mesh":[{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000266","qualifier_name":"history","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D004196","descriptor_name":"Disease Outbreaks","qualifier_ui":"Q000266","qualifier_name":"history","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000266","qualifier_name":"history","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015010","descriptor_name":"Yersinia pestis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015010","descriptor_name":"Yersinia pestis","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049672","descriptor_name":"History, 19th Century","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049690","descriptor_name":"History, Ancient","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058872","descriptor_name":"Epidemics","qualifier_ui":"Q000266","qualifier_name":"history","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1016/j.tim.2016.08.004","doi":"https://doi.org/10.1016/j.tim.2016.08.004","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.tim.2016.08.004","pdf_url":null,"source":{"id":"https://openalex.org/S587692","display_name":"Trends in Microbiology","issn_l":"0966-842X","issn":["0966-842X","1878-4380"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-2","ki-jl-1","medline","norway-1","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Trends in Microbiology","raw_type":"journal-article"},{"id":"pmid:27618404","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27618404","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Trends in microbiology","raw_type":"Historical Article"},{"id":"pmh:oai:repository.si.edu:10088/30083","doi":null,"is_oa":false,"landing_page_url":"https://hdl.handle.net/10088/30083","pdf_url":null,"source":{"id":"https://openalex.org/S4306402600","display_name":"Smithsonian Digital Repository (Smithsonian Institution)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I103187081","host_organization_name":"Smithsonian Institution","host_organization_lineage":["https://openalex.org/I103187081"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6240000128746033,"id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":87,"referenced_works":["https://openalex.org/W121713520","https://openalex.org/W569852599","https://openalex.org/W613306392","https://openalex.org/W1497730167","https://openalex.org/W1533481140","https://openalex.org/W1693165432","https://openalex.org/W1927098141","https://openalex.org/W1968824590","https://openalex.org/W1969736391","https://openalex.org/W1975375203","https://openalex.org/W1978631525","https://openalex.org/W1981833315","https://openalex.org/W1982604122","https://openalex.org/W1987914455","https://openalex.org/W1991894753","https://openalex.org/W1991909065","https://openalex.org/W1994235548","https://openalex.org/W1996359115","https://openalex.org/W1999741569","https://openalex.org/W2010018187","https://openalex.org/W2015118036","https://openalex.org/W2024189200","https://openalex.org/W2030250838","https://openalex.org/W2031335103","https://openalex.org/W2031830783","https://openalex.org/W2036316881","https://openalex.org/W2042063390","https://openalex.org/W2043470990","https://openalex.org/W2046724979","https://openalex.org/W2047547971","https://openalex.org/W2050254973","https://openalex.org/W2054273522","https://openalex.org/W2057340156","https://openalex.org/W2066084832","https://openalex.org/W2070720545","https://openalex.org/W2072647108","https://openalex.org/W2075447938","https://openalex.org/W2086477707","https://openalex.org/W2089566239","https://openalex.org/W2089568346","https://openalex.org/W2090443474","https://openalex.org/W2100316471","https://openalex.org/W2101294025","https://openalex.org/W2104148197","https://openalex.org/W2108125433","https://openalex.org/W2108208786","https://openalex.org/W2110835349","https://openalex.org/W2113055661","https://openalex.org/W2113229776","https://openalex.org/W2114418658","https://openalex.org/W2116018449","https://openalex.org/W2118150303","https://openalex.org/W2119611042","https://openalex.org/W2120342560","https://openalex.org/W2123152317","https://openalex.org/W2123189862","https://openalex.org/W2123386205","https://openalex.org/W2135086086","https://openalex.org/W2141052558","https://openalex.org/W2141737250","https://openalex.org/W2146394261","https://openalex.org/W2146593660","https://openalex.org/W2147861350","https://openalex.org/W2149683346","https://openalex.org/W2150205460","https://openalex.org/W2154930815","https://openalex.org/W2156330112","https://openalex.org/W2159367931","https://openalex.org/W2160323890","https://openalex.org/W2161036972","https://openalex.org/W2169720428","https://openalex.org/W2171896792","https://openalex.org/W2171929540","https://openalex.org/W2229221169","https://openalex.org/W2237523483","https://openalex.org/W2246511902","https://openalex.org/W2257156795","https://openalex.org/W2300460779","https://openalex.org/W2307185071","https://openalex.org/W2319185332","https://openalex.org/W2324339247","https://openalex.org/W2397730477","https://openalex.org/W2409881777","https://openalex.org/W2567978669","https://openalex.org/W2950523619","https://openalex.org/W4292550103","https://openalex.org/W6683869723"],"related_works":["https://openalex.org/W2092801553","https://openalex.org/W2930841567","https://openalex.org/W4221120024","https://openalex.org/W4416298518","https://openalex.org/W4303699821","https://openalex.org/W2946535838","https://openalex.org/W2088267463","https://openalex.org/W2602952385","https://openalex.org/W2961987863","https://openalex.org/W2958708809"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":38},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-09-16T00:00:00"}