{"id":"https://openalex.org/W2480447883","doi":null,"title":"Functional Genomics: Transcriptomics","display_name":"Functional Genomics: Transcriptomics","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2480447883","mag":"2480447883"},"language":"en","primary_location":{"id":"pmh:oai:repositorio.uchile.cl:2250/120285","doi":null,"is_oa":false,"landing_page_url":"https://repositorio.uchile.cl/handle/2250/120285","pdf_url":null,"source":{"id":"https://openalex.org/S4306481413","display_name":"Universidad de Chile","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Cap\u00edtulo de libro"},"volume":null,"type":"book-chapter","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075793327","display_name":"Livio Trainotti","orcid":"https://orcid.org/0000-0002-8829-8205","observed_orcids":["https://orcid.org/0000-0002-8829-8205"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Livio Trainotti","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-8829-8205","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011190061","display_name":"Stefano Cagnin","orcid":"https://orcid.org/0000-0001-7271-4625","observed_orcids":["https://orcid.org/0000-0001-7271-4625"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefano Cagnin","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-7271-4625","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023578913","display_name":"Mar\u00eda Loreto Prat Del R\u00edo","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mar\u00eda Loreto Prat Del R\u00edo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051265127","display_name":"Claudio Forcato","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Claudio Forcato","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036558156","display_name":"Claudio Bonghi","orcid":"https://orcid.org/0000-0002-7100-8160","observed_orcids":["https://orcid.org/0000-0002-7100-8160"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Claudio Bonghi","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-7100-8160","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062845801","display_name":"Amit Dhingra","orcid":"https://orcid.org/0000-0002-4464-2502","observed_orcids":["https://orcid.org/0000-0002-4464-2502"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Amit Dhingra","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-4464-2502","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012559508","display_name":"Tyson Koepke","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tyson Koepke","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063421203","display_name":"Jonathan E. Maldonado","orcid":"https://orcid.org/0000-0002-9967-0885","observed_orcids":["https://orcid.org/0000-0002-9967-0885"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jonathan Maldonado","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-9967-0885","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5029290549","display_name":"Herm\u00e1n Silva","orcid":"https://orcid.org/0000-0003-1007-7442","observed_orcids":["https://orcid.org/0000-0003-1007-7442"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Herm\u00e1n Silva","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-1007-7442","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.8679,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.84397366,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"292","last_page":"322"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.38260000944137573,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.38260000944137573,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.2791000008583069,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10473","display_name":"Postharvest Quality and Shelf Life Management","score":0.12349999696016312,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prunus","display_name":"Prunus","score":0.906000018119812},{"id":"https://openalex.org/keywords/transcriptomics","display_name":"transcriptomics","score":0.8209999799728394},{"id":"https://openalex.org/keywords/expressed-sequence-tags","display_name":"expressed sequence tags","score":0.7990000247955322},{"id":"https://openalex.org/keywords/peach","display_name":"peach","score":0.9049999713897705},{"id":"https://openalex.org/keywords/apricot","display_name":"apricot","score":0.9890000224113464},{"id":"https://openalex.org/keywords/almond","display_name":"almond","score":1.0},{"id":"https://openalex.org/keywords/fruit-ripening","display_name":"fruit ripening","score":0.9890000224113464},{"id":"https://openalex.org/keywords/chilling-injury","display_name":"chilling injury","score":0.7749999761581421},{"id":"https://openalex.org/keywords/disease-resistance","display_name":"disease resistance","score":0.9309999942779541},{"id":"https://openalex.org/keywords/microarray","display_name":"microarray","score":0.6970000267028809},{"id":"https://openalex.org/keywords/molecular-markers","display_name":"molecular markers","score":0.8009999990463257},{"id":"https://openalex.org/keywords/marker-assisted-breeding","display_name":"marker-assisted breeding","score":0.9150000214576721},{"id":"https://openalex.org/keywords/differential-gene-expression","display_name":"differential gene expression","score":0.6179999709129333},{"id":"https://openalex.org/keywords/genome-wide-expression-profiling","display_name":"genome-wide expression profiling","score":0.49799999594688416}],"concepts":[{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6396980285644531},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.4673274755477905},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46407225728034973},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40968409180641174},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39054691791534424},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3703748285770416},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32091274857521057},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2945448160171509},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2912111282348633},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16732269525527954}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:repositorio.uchile.cl:2250/120285","doi":null,"is_oa":false,"landing_page_url":"https://repositorio.uchile.cl/handle/2250/120285","pdf_url":null,"source":{"id":"https://openalex.org/S4306481413","display_name":"Universidad de Chile","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Cap\u00edtulo de libro"},{"id":"pmh:oai:www.research.unipd.it:11577/2490862","doi":null,"is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/2490862","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/bookPart"},{"id":"mag:2480447883","doi":null,"is_oa":false,"landing_page_url":"http://repositorio.uchile.cl/handle/2250/120285","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8409000039100647,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":111,"referenced_works":["https://openalex.org/W1273143","https://openalex.org/W998413011","https://openalex.org/W1207540825","https://openalex.org/W1486063653","https://openalex.org/W1493660663","https://openalex.org/W1517553663","https://openalex.org/W1784029848","https://openalex.org/W1965175512","https://openalex.org/W1966460834","https://openalex.org/W1967950828","https://openalex.org/W1971329038","https://openalex.org/W1977429939","https://openalex.org/W1981808404","https://openalex.org/W1987878643","https://openalex.org/W1990664267","https://openalex.org/W1992630100","https://openalex.org/W1992769932","https://openalex.org/W1993938940","https://openalex.org/W1997405626","https://openalex.org/W2000895664","https://openalex.org/W2002128639","https://openalex.org/W2002277401","https://openalex.org/W2010018740","https://openalex.org/W2010808514","https://openalex.org/W2014197735","https://openalex.org/W2014341228","https://openalex.org/W2027105072","https://openalex.org/W2029770980","https://openalex.org/W2031212650","https://openalex.org/W2032831398","https://openalex.org/W2035813314","https://openalex.org/W2036187899","https://openalex.org/W2039048637","https://openalex.org/W2040902763","https://openalex.org/W2046440276","https://openalex.org/W2049291669","https://openalex.org/W2051279278","https://openalex.org/W2053184946","https://openalex.org/W2055171684","https://openalex.org/W2056081588","https://openalex.org/W2056451857","https://openalex.org/W2059781101","https://openalex.org/W2059831108","https://openalex.org/W2064133865","https://openalex.org/W2065669393","https://openalex.org/W2065778417","https://openalex.org/W2066634646","https://openalex.org/W2067252556","https://openalex.org/W2067371713","https://openalex.org/W2067655607","https://openalex.org/W2073741389","https://openalex.org/W2076955957","https://openalex.org/W2081213548","https://openalex.org/W2083065651","https://openalex.org/W2090097163","https://openalex.org/W2091817741","https://openalex.org/W2092766606","https://openalex.org/W2094117564","https://openalex.org/W2094330411","https://openalex.org/W2095666435","https://openalex.org/W2095903088","https://openalex.org/W2096879539","https://openalex.org/W2098258971","https://openalex.org/W2099779731","https://openalex.org/W2103166399","https://openalex.org/W2104190774","https://openalex.org/W2104665563","https://openalex.org/W2105287938","https://openalex.org/W2105634132","https://openalex.org/W2105776281","https://openalex.org/W2106184652","https://openalex.org/W2108064422","https://openalex.org/W2109052861","https://openalex.org/W2109304262","https://openalex.org/W2111823617","https://openalex.org/W2114156326","https://openalex.org/W2116548284","https://openalex.org/W2121211805","https://openalex.org/W2121668828","https://openalex.org/W2125013165","https://openalex.org/W2127519035","https://openalex.org/W2127801899","https://openalex.org/W2129592628","https://openalex.org/W2130001957","https://openalex.org/W2134800079","https://openalex.org/W2138766417","https://openalex.org/W2140084277","https://openalex.org/W2141099859","https://openalex.org/W2144561479","https://openalex.org/W2147557450","https://openalex.org/W2148737891","https://openalex.org/W2150157898","https://openalex.org/W2151450711","https://openalex.org/W2155206802","https://openalex.org/W2155912523","https://openalex.org/W2160123081","https://openalex.org/W2162592462","https://openalex.org/W2166027582","https://openalex.org/W2168215457","https://openalex.org/W2170729756","https://openalex.org/W2189357026","https://openalex.org/W2336956854","https://openalex.org/W2366547584","https://openalex.org/W2468366369","https://openalex.org/W2503783539","https://openalex.org/W2507748688","https://openalex.org/W2523919150","https://openalex.org/W2589639776","https://openalex.org/W2590146542","https://openalex.org/W2621992434","https://openalex.org/W7096002534"],"related_works":["https://openalex.org/W2506301706","https://openalex.org/W7096960972","https://openalex.org/W2014197735","https://openalex.org/W7065804935","https://openalex.org/W1545351775","https://openalex.org/W2325132022","https://openalex.org/W2744836259","https://openalex.org/W1966460834","https://openalex.org/W7222844077","https://openalex.org/W2141099859"],"abstract_inverted_index":{"Transcriptomics":[0,209],"approaches":[1,178],"in":[2,30,70,158,164,180,197,225],"the":[3,11,14,55,58,62,73,99,133,169,201,215,229,243,261],"Prunus":[4,159,182,235],"genus":[5],"started":[6],"to":[7,40,117,125,153,193,199,212,222],"be":[8,126,174,223],"developed":[9,26,108,188],"since":[10],"beginning":[12,56],"of":[13,22,57,61,75,91,101,204,218,231,239],"new":[15,232,244],"century.":[16],"In":[17],"few":[18],"years,":[19],"a":[20,155],"set":[21],"tools":[23,35],"have":[24,36,112,154,186],"been":[25,37,85,113,187],"and":[27,33,44,51,98,191,206,252],"used,":[28],"mainly":[29,116],"peach,":[31],"apricot":[32],"almond.\\nTranscriptomics":[34],"primarily":[38],"used":[39,86,115,175,192,224],"investigate":[41,118],"fruit":[42,96,104,119],"ripening":[43,97],"post-harvest":[45,103],"physiology,":[46],"but":[47,121],"also":[48,151,179],"disease":[49],"resistance":[50],"flower":[52],"transition.":[53],"At":[54],"second":[59,144],"decade":[60],"century,":[63],"more":[64],"than":[65],"100,000":[66],"ESTs":[67,111,190],"are":[68,122,150],"available":[69],"public":[71],"databases,":[72],"majority":[74],"which":[76],"were":[77],"obtained":[78,241],"from":[79,189],"peach":[80,110,136,170],"fruit.":[81],"This":[82],"repertoire":[83],"has":[84],"for":[87,176,228,254],"digital":[88],"expression":[89,256],"analyses":[90],"transcriptome":[92,195],"changes":[93],"associated":[94],"with":[95,242],"appearance":[100],"chilling-induced":[102],"disorders.":[105],"The":[106,237],"microarrays":[107],"on":[109,132,143],"extensively":[114],"biology":[120],"soon":[123],"going":[124],"replaced":[127],"by":[128],"genome-wide":[129],"platforms":[130],"based":[131,142],"recently":[134],"released":[135],"genome":[137,171],"sequence.":[138],"Transcriptome":[139],"profi":[140],"ling":[141],"generation":[145,245],"DNA":[146],"sequencing":[147,246],"(SGS)":[148],"technologies":[149,247],"expected":[152,211],"tremendous":[156],"impact":[157],"genomics.":[160],"Pilot":[161],"experiments":[162],"conducted":[163],"several":[165],"laboratories":[166],"show":[167],"that":[168],"sequence":[172],"may":[173],"SGS":[177],"other":[181],"species.\\nMany":[183],"molecular":[184,220],"markers":[185,221],"construct":[194],"maps":[196],"order":[198],"find":[200],"genetic":[202],"determinants":[203],"Mendelian":[205],"quantitative":[207],"traits.":[208],"is":[210],"speed":[213],"up":[214],"fi":[216],"nding":[217],"functional":[219],"marker-assisted":[226],"programs":[227],"development":[230],"varieties":[233,259],"across":[234],"species.":[236],"use":[238],"information":[240,251],"will":[248],"allow":[249],"crossing":[250],"looks":[253],"differential":[255],"into":[257],"different":[258,267],"within":[260],"same":[262],"specie":[263],"as":[264,266],"well":[265],"ones.":[268]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-08-23T00:00:00"}
