{"id":"https://openalex.org/W2464093769","doi":"https://doi.org/10.1371/journal.pone.0158866","title":"The Genomic Sequence of the Oral Pathobiont Strain NI1060 Reveals Unique Strategies for Bacterial Competition and Pathogenicity","display_name":"The Genomic Sequence of the Oral Pathobiont Strain NI1060 Reveals Unique Strategies for Bacterial Competition and Pathogenicity","publication_year":2016,"publication_date":"2016-07-13","ids":{"openalex":"https://openalex.org/W2464093769","doi":"https://doi.org/10.1371/journal.pone.0158866","mag":"2464093769","pmid":"https://pubmed.ncbi.nlm.nih.gov/27409077","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4943601"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pone.0158866","doi":"https://doi.org/10.1371/journal.pone.0158866","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0158866","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0158866&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS ONE","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0158866&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003198691","display_name":"Youssef Darzi","orcid":"https://orcid.org/0000-0001-7655-5764","observed_orcids":["https://orcid.org/0000-0001-7655-5764"]},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]},{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Youssef Darzi","raw_affiliation_strings":["Center for the Biology of Disease, VIB, Leuven, Belgium","Department of Bioengineering Sciences, Microbiology Unit, Vrije Universiteit Brussel, Brussels, Belgium","Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium"],"raw_orcid":"https://orcid.org/0000-0001-7655-5764","affiliations":[{"raw_affiliation_string":"Center for the Biology of Disease, VIB, Leuven, Belgium","institution_ids":[]},{"raw_affiliation_string":"Department of Bioengineering Sciences, Microbiology Unit, Vrije Universiteit Brussel, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109445095","display_name":"Yizu Jiao","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yizu Jiao","raw_affiliation_strings":["Department of Pathology, University of Michigan, Ann Arbor, Michigan, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of Michigan, Ann Arbor, Michigan, United States of America","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091241968","display_name":"Mizuho Hasegawa","orcid":"https://orcid.org/0000-0002-4108-2773","observed_orcids":["https://orcid.org/0000-0002-4108-2773"]},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mizuho Hasegawa","raw_affiliation_strings":["Department of Pathology, University of Michigan, Ann Arbor, Michigan, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of Michigan, Ann Arbor, Michigan, United States of America","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073172637","display_name":"Henry H. Moon","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Henry Moon","raw_affiliation_strings":["Department of Pathology, University of Michigan, Ann Arbor, Michigan, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of Michigan, Ann Arbor, Michigan, United States of America","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040117830","display_name":"Gabriel N\u00fa\u00f1ez","orcid":"https://orcid.org/0000-0002-6529-2695","observed_orcids":["https://orcid.org/0000-0002-6529-2695"]},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gabriel N\u00fa\u00f1ez","raw_affiliation_strings":["Comprehensive Cancer Center, University of Michigan, Ann Arbor, Michigan, United States of America","Department of Pathology, University of Michigan, Ann Arbor, Michigan, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Comprehensive Cancer Center, University of Michigan, Ann Arbor, Michigan, United States of America","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Department of Pathology, University of Michigan, Ann Arbor, Michigan, United States of America","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089820146","display_name":"Naohiro Inohara","orcid":"https://orcid.org/0000-0002-4215-9349","observed_orcids":["https://orcid.org/0000-0002-4215-9349"]},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Naohiro Inohara","raw_affiliation_strings":["Department of Pathology, University of Michigan, Ann Arbor, Michigan, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of Michigan, Ann Arbor, Michigan, United States of America","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023078719","display_name":"Jeroen Raes","orcid":"https://orcid.org/0000-0002-1337-041X","observed_orcids":["https://orcid.org/0000-0002-1337-041X"]},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]},{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Jeroen Raes","raw_affiliation_strings":["Center for the Biology of Disease, VIB, Leuven, Belgium","Department of Bioengineering Sciences, Microbiology Unit, Vrije Universiteit Brussel, Brussels, Belgium","Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for the Biology of Disease, VIB, Leuven, Belgium","institution_ids":[]},{"raw_affiliation_string":"Department of Bioengineering Sciences, Microbiology Unit, Vrije Universiteit Brussel, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5023078719","https://openalex.org/A5089820146"],"corresponding_institution_ids":["https://openalex.org/I13469542","https://openalex.org/I24156275","https://openalex.org/I27837315","https://openalex.org/I99464096"],"apc_list":{"value":2382,"currency":"USD","value_usd":2382},"apc_paid":{"value":2382,"currency":"USD","value_usd":2382},"fwci":1.9876,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.85022895,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":95},"biblio":{"volume":"11","issue":"7","first_page":"e0158866","last_page":"e0158866"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/oral-pathobionts","display_name":"oral pathobionts","score":0.7459999918937683},{"id":"https://openalex.org/keywords/periodontitis","display_name":"periodontitis","score":0.875},{"id":"https://openalex.org/keywords/pasteurella","display_name":"Pasteurella","score":0.5509999990463257},{"id":"https://openalex.org/keywords/pasteurellaceae","display_name":"Pasteurellaceae","score":0.8270000219345093},{"id":"https://openalex.org/keywords/novel-bacterial-species","display_name":"novel bacterial species","score":0.8519999980926514},{"id":"https://openalex.org/keywords/interbacterial-competition","display_name":"bacterial competition","score":0.7039999961853027},{"id":"https://openalex.org/keywords/virulence-genes","display_name":"virulence genes","score":0.8849999904632568},{"id":"https://openalex.org/keywords/adhesins","display_name":"adhesins","score":0.9610000252723694},{"id":"https://openalex.org/keywords/nod1","display_name":"NOD1","score":0.7689999938011169},{"id":"https://openalex.org/keywords/peptidoglycan-recycling","display_name":"peptidoglycan recycling","score":0.9300000071525574},{"id":"https://openalex.org/keywords/bacterial-metabolism","display_name":"bacterial metabolism","score":0.35899999737739563},{"id":"https://openalex.org/keywords/oral-dysbiosis","display_name":"oral dysbiosis","score":0.7070000171661377},{"id":"https://openalex.org/keywords/genome-sequence","display_name":"genome sequence","score":0.45399999618530273}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8797392845153809},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.676023006439209},{"id":"https://openalex.org/C62130838","wikidata":"https://www.wikidata.org/wiki/Q5196163","display_name":"Pathogenicity island","level":4,"score":0.5846716165542603},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.553199827671051},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.5423226952552795},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.4893893599510193},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.48281916975975037},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4818750321865082},{"id":"https://openalex.org/C2780258820","wikidata":"https://www.wikidata.org/wiki/Q5195454","display_name":"Genomic island","level":4,"score":0.4811626374721527},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4803391695022583},{"id":"https://openalex.org/C2776634448","wikidata":"https://www.wikidata.org/wiki/Q206920","display_name":"Peptidoglycan","level":3,"score":0.4712904989719391},{"id":"https://openalex.org/C2780183776","wikidata":"https://www.wikidata.org/wiki/Q3214147","display_name":"Porphyromonas gingivalis","level":3,"score":0.427237331867218},{"id":"https://openalex.org/C2777165150","wikidata":"https://www.wikidata.org/wiki/Q269334","display_name":"Dysbiosis","level":3,"score":0.4164663553237915},{"id":"https://openalex.org/C73445445","wikidata":"https://www.wikidata.org/wiki/Q1712327","display_name":"Prophage","level":5,"score":0.4153459668159485},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.30944153666496277},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.23797988891601562},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.18067267537117004},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.16974496841430664},{"id":"https://openalex.org/C2776441376","wikidata":"https://www.wikidata.org/wiki/Q165028","display_name":"Bacteriophage","level":4,"score":0.11811897158622742}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008070","descriptor_name":"Lipopolysaccharides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010518","descriptor_name":"Periodontitis","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015661","descriptor_name":"Pasteurellaceae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D015661","descriptor_name":"Pasteurellaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015661","descriptor_name":"Pasteurellaceae","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pone.0158866","doi":"https://doi.org/10.1371/journal.pone.0158866","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0158866","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0158866&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS ONE","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:3931227","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4943601","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4943601","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4943601","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS One","raw_type":"Text"},{"id":"pmid:27409077","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27409077","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PloS one","raw_type":"Journal Article"},{"id":"pmh:oai:lirias2repo.kuleuven.be:123456789/546180","doi":null,"is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/123456789/546180","pdf_url":"https://lirias.kuleuven.be/retrieve/8e30b142-8569-4264-b365-3d127b1644d1","source":{"id":"https://openalex.org/S7407055369","display_name":"Lirias","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS One, vol. 11 (7), Art.No. ARTN e0158866","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:043e576dbbb4452ebeafeb527c09a916","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/043e576dbbb4452ebeafeb527c09a916","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS ONE, Vol 11, Iss 7, p e0158866 (2016)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/3902037","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/The_Genomic_Sequence_of_the_Oral_Pathobiont_Strain_NI1060_Reveals_Unique_Strategies_for_Bacterial_Competition_and_Pathogenicity/3902037","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:vubissmart:VUBISSMART:2000:136902","doi":null,"is_oa":false,"landing_page_url":"https://biblio.vub.ac.be/vubir/the-genomic-sequence-of-the-oral-pathobiont-strain-ni1060-reveals-unique-strategies-for-bacterial-competition-and-pathogenicity(b70af2f1-571c-4ffd-bd12-87c27be18671).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306402573","display_name":"VUBIR (Vrije Universiteit Brussel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I13469542","host_organization_name":"Vrije Universiteit Brussel","host_organization_lineage":["https://openalex.org/I13469542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pone.0158866","doi":"https://doi.org/10.1371/journal.pone.0158866","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0158866","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0158866&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS ONE","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.8371999859809875}],"study_designs":[],"awards":[{"id":"https://openalex.org/G7245670877","display_name":"Regulation of Oral Bacteria by Pattern Recognition Receptors","funder_award_id":"R01DE018503","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"}],"funders":[{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320322308","display_name":"KU Leuven","ror":"https://ror.org/05f950310"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337365","display_name":"National Institute of Dental and Craniofacial Research","ror":"https://ror.org/004a2wv92"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2464093769.pdf","grobid_xml":"https://content.openalex.org/works/W2464093769.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W130881599","https://openalex.org/W1749616146","https://openalex.org/W1971403296","https://openalex.org/W1974640383","https://openalex.org/W1975221762","https://openalex.org/W1976606694","https://openalex.org/W1979471280","https://openalex.org/W1981645153","https://openalex.org/W1982855075","https://openalex.org/W1993063659","https://openalex.org/W1997072139","https://openalex.org/W2002070061","https://openalex.org/W2004548026","https://openalex.org/W2014286596","https://openalex.org/W2017092080","https://openalex.org/W2020350008","https://openalex.org/W2024891512","https://openalex.org/W2028460474","https://openalex.org/W2031611770","https://openalex.org/W2036577631","https://openalex.org/W2040024879","https://openalex.org/W2040853949","https://openalex.org/W2046118138","https://openalex.org/W2053941125","https://openalex.org/W2055666215","https://openalex.org/W2059219034","https://openalex.org/W2059697362","https://openalex.org/W2066871629","https://openalex.org/W2074792363","https://openalex.org/W2076163156","https://openalex.org/W2083084316","https://openalex.org/W2097107919","https://openalex.org/W2100069737","https://openalex.org/W2100363512","https://openalex.org/W2103029525","https://openalex.org/W2112309782","https://openalex.org/W2114850508","https://openalex.org/W2115069651","https://openalex.org/W2116913446","https://openalex.org/W2119888547","https://openalex.org/W2120902911","https://openalex.org/W2121703775","https://openalex.org/W2121748291","https://openalex.org/W2124620973","https://openalex.org/W2125381344","https://openalex.org/W2127546816","https://openalex.org/W2128639098","https://openalex.org/W2131157113","https://openalex.org/W2132926880","https://openalex.org/W2135838357","https://openalex.org/W2136286121","https://openalex.org/W2136749557","https://openalex.org/W2136961240","https://openalex.org/W2137087452","https://openalex.org/W2138253164","https://openalex.org/W2138864786","https://openalex.org/W2141778814","https://openalex.org/W2150654633","https://openalex.org/W2162123770","https://openalex.org/W2167294225","https://openalex.org/W4234317413","https://openalex.org/W4407211758"],"related_works":["https://openalex.org/W7117413471","https://openalex.org/W4221059296","https://openalex.org/W7097425013","https://openalex.org/W2061605654","https://openalex.org/W7100714844","https://openalex.org/W2072534996","https://openalex.org/W7171279510","https://openalex.org/W2765793064","https://openalex.org/W2757782722","https://openalex.org/W3160016092"],"abstract_inverted_index":{"Strain":[0],"NI1060":[1,47,72,128,163],"is":[2,73,85,137],"an":[3,132],"oral":[4],"bacterium":[5],"responsible":[6],"for":[7,112,116,159,169],"periodontitis":[8],"in":[9,80,100,139],"a":[10,37,89,146,165],"murine":[11],"ligature-induced":[12],"disease":[13],"model.":[14],"To":[15],"better":[16],"understand":[17],"its":[18,27,43,153],"pathogenicity,":[19],"we":[20,94],"have":[21],"determined":[22],"the":[23,46,76,81,117,160],"complete":[24],"sequence":[25],"of":[26,119,152,162],"2,553,982":[28],"bp":[29],"genome.":[30],"Although":[31],"closely":[32],"related":[33],"to":[34,87,145],"Pasteurella":[35],"pneumotropica,":[36],"pneumonia-associated":[38],"rodent":[39],"commensal":[40],"based":[41],"on":[42,57],"16S":[44],"rRNA,":[45],"genomic":[48],"content":[49],"suggests":[50],"that":[51,70],"they":[52],"are":[53,109],"different":[54,58],"species":[55],"thriving":[56],"energy":[59],"sources":[60],"via":[61],"alternative":[62],"metabolic":[63],"pathways.":[64],"Genomic":[65],"and":[66,84,104,115,124],"phylogenetic":[67],"analyses":[68],"showed":[69],"strain":[71,127],"distinct":[74],"from":[75],"genera":[77],"currently":[78],"described":[79],"family":[82],"Pasteurellaceae,":[83],"likely":[86],"represent":[88],"novel":[90],"species.":[91],"In":[92],"addition,":[93],"found":[95],"putative":[96],"virulence":[97],"genes":[98,108,143],"involved":[99],"lipooligosaccharide":[101],"synthesis,":[102],"adhesins":[103],"bacteriotoxic":[105],"proteins.":[106],"These":[107],"potentially":[110],"important":[111],"host":[113],"adaption":[114],"induction":[118],"dysbiosis":[120],"through":[121],"bacterial":[122],"competition":[123],"pathogenicity.":[125],"Importantly,":[126],"strongly":[129],"stimulates":[130],"Nod1,":[131],"innate":[133],"immune":[134],"receptor,":[135],"but":[136],"defective":[138],"two":[140],"peptidoglycan":[141],"recycling":[142],"due":[144],"frameshift":[147],"mutation.":[148],"The":[149],"in-depth":[150],"analysis":[151],"genome":[154],"thus":[155],"provides":[156],"critical":[157],"insights":[158],"development":[161],"as":[164],"prime":[166],"model":[167],"system":[168],"infectious":[170],"disease.":[171]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-07-22T00:00:00"}