{"id":"https://openalex.org/W2463634719","doi":"https://doi.org/10.1002/bmb.20966","title":"Using the P y MOL application to reinforce visual understanding of protein structure","display_name":"Using the P y MOL application to reinforce visual understanding of protein structure","publication_year":2016,"publication_date":"2016-05-31","ids":{"openalex":"https://openalex.org/W2463634719","doi":"https://doi.org/10.1002/bmb.20966","mag":"2463634719","pmid":"https://pubmed.ncbi.nlm.nih.gov/27241834"},"language":"en","primary_location":{"id":"doi:10.1002/bmb.20966","doi":"https://doi.org/10.1002/bmb.20966","is_oa":true,"landing_page_url":"https://doi.org/10.1002/bmb.20966","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/bmb.20966","source":{"id":"https://openalex.org/S105183386","display_name":"Biochemistry and Molecular Biology Education","issn_l":"1470-8175","issn":["1470-8175","1539-3429"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-40","russia-white-list-3"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochemistry and Molecular Biology Education","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/bmb.20966","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062577739","display_name":"Rachel E. Rigsby","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I47500176","display_name":"Belmont University","ror":"https://ror.org/033vjpd42","country_code":"US","type":"education","lineage":["https://openalex.org/I47500176"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rachel E. Rigsby","raw_affiliation_strings":["Department of Chemistry and Physics, Belmont University, Nashville, Tennessee, 37212"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Physics, Belmont University, Nashville, Tennessee, 37212","institution_ids":["https://openalex.org/I47500176"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049149827","display_name":"Alison B. Parker","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I47500176","display_name":"Belmont University","ror":"https://ror.org/033vjpd42","country_code":"US","type":"education","lineage":["https://openalex.org/I47500176"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alison B. Parker","raw_affiliation_strings":["Department of Chemistry and Physics, Belmont University, Nashville, Tennessee, 37212"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Physics, Belmont University, Nashville, Tennessee, 37212","institution_ids":["https://openalex.org/I47500176"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5062577739"],"corresponding_institution_ids":["https://openalex.org/I47500176"],"apc_list":{"value":3700,"currency":"USD","value_usd":3700},"apc_paid":null,"fwci":40.496,"has_fulltext":true,"cited_by_count":452,"citation_normalized_percentile":{"value":0.99769825,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"44","issue":"5","first_page":"433","last_page":"437"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12327","display_name":"Various Chemistry Research Topics","score":0.36160001158714294,"subfield":{"id":"https://openalex.org/subfields/3304","display_name":"Education"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T12327","display_name":"Various Chemistry Research Topics","score":0.36160001158714294,"subfield":{"id":"https://openalex.org/subfields/3304","display_name":"Education"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.26100000739097595,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10072","display_name":"Science Education and Pedagogy","score":0.15410000085830688,"subfield":{"id":"https://openalex.org/subfields/3304","display_name":"Education"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pymol","display_name":"PyMOL","score":0.9760000109672546},{"id":"https://openalex.org/keywords/protein-visualization","display_name":"protein structure visualization","score":0.8109999895095825},{"id":"https://openalex.org/keywords/three-dimensional-structure","display_name":"three-dimensional structure","score":0.6050000190734863},{"id":"https://openalex.org/keywords/visual-literacy","display_name":"visual literacy","score":0.7670000195503235},{"id":"https://openalex.org/keywords/ligand-binding","display_name":"ligand binding","score":0.6039999723434448},{"id":"https://openalex.org/keywords/small-molecules","display_name":"small molecules","score":0.5350000262260437},{"id":"https://openalex.org/keywords/ions","display_name":"ions","score":0.9259999990463257},{"id":"https://openalex.org/keywords/biochemistry-education","display_name":"biochemistry education","score":0.8309999704360962},{"id":"https://openalex.org/keywords/ipad-apps","display_name":"iPad apps","score":0.7940000295639038},{"id":"https://openalex.org/keywords/molecular-visualization","display_name":"molecular visualization","score":0.42100000381469727}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6382008790969849},{"id":"https://openalex.org/C2778750949","wikidata":"https://www.wikidata.org/wiki/Q1156763","display_name":"Visual literacy","level":2,"score":0.5009112358093262},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.49616965651512146},{"id":"https://openalex.org/C145420912","wikidata":"https://www.wikidata.org/wiki/Q853077","display_name":"Mathematics education","level":1,"score":0.4728158712387085},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4620572328567505},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3906254172325134},{"id":"https://openalex.org/C49774154","wikidata":"https://www.wikidata.org/wiki/Q131765","display_name":"Multimedia","level":1,"score":0.38194581866264343},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3745341897010803},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32024598121643066},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.26734668016433716},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21448808908462524},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10380947589874268}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001671","descriptor_name":"Biochemistry","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004521","descriptor_name":"Educational Measurement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006454","descriptor_name":"Hemoglobins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006454","descriptor_name":"Hemoglobins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013334","descriptor_name":"Students","qualifier_ui":"Q000523","qualifier_name":"psychology","is_major_topic":true},{"descriptor_ui":"D014796","descriptor_name":"Visual Perception","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018794","descriptor_name":"Problem-Based Learning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1002/bmb.20966","doi":"https://doi.org/10.1002/bmb.20966","is_oa":true,"landing_page_url":"https://doi.org/10.1002/bmb.20966","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/bmb.20966","source":{"id":"https://openalex.org/S105183386","display_name":"Biochemistry and Molecular Biology Education","issn_l":"1470-8175","issn":["1470-8175","1539-3429"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-40","russia-white-list-3"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochemistry and Molecular Biology Education","raw_type":"journal-article"},{"id":"pmid:27241834","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27241834","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1002/bmb.20966","doi":"https://doi.org/10.1002/bmb.20966","is_oa":true,"landing_page_url":"https://doi.org/10.1002/bmb.20966","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/bmb.20966","source":{"id":"https://openalex.org/S105183386","display_name":"Biochemistry and Molecular Biology Education","issn_l":"1470-8175","issn":["1470-8175","1539-3429"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-40","russia-white-list-3"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochemistry and Molecular Biology Education","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8278999924659729,"display_name":"Quality education"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2463634719.pdf","grobid_xml":"https://content.openalex.org/works/W2463634719.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1523371744","https://openalex.org/W1532898799","https://openalex.org/W1569258349","https://openalex.org/W1867800031","https://openalex.org/W1907789976","https://openalex.org/W1977498118","https://openalex.org/W1980582197","https://openalex.org/W2006045338","https://openalex.org/W2032474138","https://openalex.org/W2042779478","https://openalex.org/W2067682558","https://openalex.org/W2099373012","https://openalex.org/W2155290744","https://openalex.org/W2530588805"],"related_works":["https://openalex.org/W7034506688","https://openalex.org/W2988865675","https://openalex.org/W6926487087","https://openalex.org/W6922397640","https://openalex.org/W1983577783","https://openalex.org/W4393167460","https://openalex.org/W7034822575","https://openalex.org/W7010700367","https://openalex.org/W2779159202","https://openalex.org/W3132984546"],"abstract_inverted_index":{"Visualization":[0],"of":[1,19,33,72,74,77,86,94,121,133],"chemical":[2],"concepts":[3],"can":[4,108],"be":[5,42,110],"challenging":[6],"for":[7,16],"many":[8],"students.":[9],"This":[10],"is":[11,26,37,64],"arguably":[12],"a":[13,104,113,119],"critical":[14],"skill":[15,56],"beginning":[17],"students":[18,52,68],"biochemistry":[20],"to":[21,66],"develop,":[22],"since":[23],"new":[24],"information":[25],"often":[27],"presented":[28],"visually":[29],"in":[30,45,69,112],"the":[31,46,92,95,122],"form":[32],"textbook":[34],"figures.":[35],"It":[36,99],"recommended":[38],"that":[39,51],"visual":[40],"literacy":[41],"explicitly":[43],"taught":[44],"classroom":[47],"rather":[48],"than":[49],"assuming":[50],"will":[53],"develop":[54],"this":[55],"on":[57],"their":[58,70],"own.":[59],"The":[60,130],"activity":[61,123],"described":[62],"here":[63],"designed":[65],"assist":[67],"development":[71],"understanding":[73],"basic":[75],"representations":[76],"protein":[78],"three-dimensional":[79],"structure":[80],"as":[81,83,103,125],"well":[82],"various":[84],"types":[85],"ligands":[87],"(small":[88],"molecules,":[89],"ions)":[90],"through":[91],"use":[93],"iPad":[96],"application":[97],"PyMOL.":[98],"has":[100],"been":[101],"used":[102,111],"laboratory":[105],"exercise":[106],"but":[107],"also":[109],"typical":[114],"50-minute":[115],"class":[116],"period":[117],"with":[118],"portion":[120],"assigned":[124],"homework.":[126],"\u00a9":[127],"2016":[128],"by":[129],"International":[131],"Union":[132],"Biochemistry":[134],"and":[135],"Molecular":[136],"Biology,":[137],"44(5):433-437,":[138],"2016.":[139]},"counts_by_year":[{"year":2026,"cited_by_count":58},{"year":2025,"cited_by_count":67},{"year":2024,"cited_by_count":68},{"year":2023,"cited_by_count":73},{"year":2022,"cited_by_count":62},{"year":2021,"cited_by_count":48},{"year":2020,"cited_by_count":41},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-07-22T00:00:00"}