{"id":"https://openalex.org/W2420031946","doi":null,"title":"Identification of a stable RNA encoded by the H-strand of the mouse mitochondrial D-loop region and a conserved sequence motif immediately upstream of its polyadenylation site.","display_name":"Identification of a stable RNA encoded by the H-strand of the mouse mitochondrial D-loop region and a conserved sequence motif immediately upstream of its polyadenylation site.","publication_year":1995,"publication_date":"1995-01-01","ids":{"openalex":"https://openalex.org/W2420031946","mag":"2420031946","pmid":"https://pubmed.ncbi.nlm.nih.gov/7537562","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6134379"},"language":"en","primary_location":{"id":"pmh:oai:europepmc.org:5113727","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6134379","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6134379","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012090678","display_name":"Camasamudram Vijayasarathy","orcid":"https://orcid.org/0000-0002-7190-3501","observed_orcids":["https://orcid.org/0000-0002-7190-3501"]},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C Vijayasarathy","raw_affiliation_strings":["Department of Animal Biology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia 19104-6047, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Biology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia 19104-6047, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Y M Zheng","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Y M Zheng","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018742429","display_name":"Jayati Mullick","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J Mullick","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"A Basu","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A Basu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5052486855","display_name":"Narayan G. Avadhani","orcid":"https://orcid.org/0000-0001-6496-6232","observed_orcids":["https://orcid.org/0000-0001-6496-6232"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"N G Avadhani","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1039,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.30288315,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":"4","issue":"3","first_page":"125","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.7432000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.7432000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.13609999418258667,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.023000000044703484,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/d-loop","display_name":"D-loop","score":0.8389999866485596},{"id":"https://openalex.org/keywords/poly-a-rna","display_name":"polyadenylated RNA","score":0.8370000123977661},{"id":"https://openalex.org/keywords/polyadenylation-signal","display_name":"polyadenylation signal","score":0.7570000290870667},{"id":"https://openalex.org/keywords/tissue-specific-expression","display_name":"tissue-specific gene expression","score":0.5680000185966492},{"id":"https://openalex.org/keywords/myogenesis","display_name":"myogenesis","score":0.871999979019165},{"id":"https://openalex.org/keywords/c2c12-myotubes","display_name":"C2C12 myotubes","score":0.878000020980835}],"concepts":[{"id":"https://openalex.org/C142575336","wikidata":"https://www.wikidata.org/wiki/Q412148","display_name":"Polyadenylation","level":4,"score":0.6966953873634338},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.668121337890625},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6542885899543762},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6332822442054749},{"id":"https://openalex.org/C198268994","wikidata":"https://www.wikidata.org/wiki/Q3774404","display_name":"D-loop","level":4,"score":0.559468686580658},{"id":"https://openalex.org/C187882448","wikidata":"https://www.wikidata.org/wiki/Q283478","display_name":"Complementary DNA","level":3,"score":0.4616583287715912},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.41679641604423523},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.4143761992454529},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.40956783294677734},{"id":"https://openalex.org/C24586158","wikidata":"https://www.wikidata.org/wiki/Q27075","display_name":"Mitochondrial DNA","level":3,"score":0.3360954523086548},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3167417049407959}],"mesh":[{"descriptor_ui":"D000077278","descriptor_name":"RNA, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000225","descriptor_name":"Adenine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004272","descriptor_name":"DNA, Mitochondrial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004272","descriptor_name":"DNA, Mitochondrial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009132","descriptor_name":"Muscles","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012360","descriptor_name":"RNA, Transfer, Phe","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013728","descriptor_name":"Terminator Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"pmh:oai:europepmc.org:5113727","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6134379","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:7537562","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/7537562","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gene expression","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6134379","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC6134379/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gene Expr","raw_type":"Text"},{"id":"mag:2420031946","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/7537562","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"PubMed","raw_type":null}],"best_oa_location":{"id":"pmh:oai:europepmc.org:5113727","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6134379","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G464801204","display_name":"Role of Mitochondrial Respiratory Stress Signaling in Cancer Progression","funder_award_id":"R01CA022762","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8788131803","display_name":"MITOCHONDRIAL D LOOP DNA MUTATIONS AND GENE EXPRESSION","funder_award_id":"R37CA022762","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W153647119","https://openalex.org/W179236238","https://openalex.org/W1484705729","https://openalex.org/W1506172359","https://openalex.org/W1509147620","https://openalex.org/W1541027473","https://openalex.org/W1551570734","https://openalex.org/W1555058870","https://openalex.org/W1557948809","https://openalex.org/W1565925826","https://openalex.org/W1593437937","https://openalex.org/W1597843181","https://openalex.org/W1598839567","https://openalex.org/W1609801461","https://openalex.org/W1652853529","https://openalex.org/W1756375432","https://openalex.org/W1797307354","https://openalex.org/W1801560648","https://openalex.org/W1819847829","https://openalex.org/W1843524885","https://openalex.org/W1844945561","https://openalex.org/W1915242172","https://openalex.org/W1936098489","https://openalex.org/W1948140463","https://openalex.org/W1970693337","https://openalex.org/W1982151076","https://openalex.org/W1986322559","https://openalex.org/W1989841259","https://openalex.org/W1990786675","https://openalex.org/W1991654003","https://openalex.org/W1993243592","https://openalex.org/W1998974825","https://openalex.org/W2011085413","https://openalex.org/W2014257871","https://openalex.org/W2017592329","https://openalex.org/W2019636553","https://openalex.org/W2020208382","https://openalex.org/W2027324937","https://openalex.org/W2030230379","https://openalex.org/W2032379826","https://openalex.org/W2035104107","https://openalex.org/W2035257545","https://openalex.org/W2037852650","https://openalex.org/W2042120426","https://openalex.org/W2045409504","https://openalex.org/W2048465856","https://openalex.org/W2054073262","https://openalex.org/W2056391548","https://openalex.org/W2057556578","https://openalex.org/W2069214847","https://openalex.org/W2071789894","https://openalex.org/W2092910502","https://openalex.org/W2105933640","https://openalex.org/W2109291482","https://openalex.org/W2109728231","https://openalex.org/W2117915375","https://openalex.org/W2129398678","https://openalex.org/W2133556236","https://openalex.org/W2265470128"],"related_works":["https://openalex.org/W2077156849","https://openalex.org/W1976539766","https://openalex.org/W1495988962","https://openalex.org/W2039620839","https://openalex.org/W1998809391","https://openalex.org/W1967342671","https://openalex.org/W2400179014","https://openalex.org/W1980360743","https://openalex.org/W7096605158","https://openalex.org/W2051574409"],"abstract_inverted_index":{"By":[0],"using":[1],"a":[2,24,49,205,212,251],"combination":[3],"of":[4,17,33,42,55,67,72,81,101,123,156,165,218,242,259],"Northern":[5],"blot":[6],"hybridization":[7],"with":[8],"strand-specific":[9],"DNA":[10,191,229],"probes,":[11],"S1":[12],"nuclease":[13],"protection,":[14],"and":[15,58,95,136,146,264],"sequencing":[16],"oligo-dT-primed":[18],"cDNA":[19],"clones,":[20],"we":[21,248],"have":[22,182,249],"identified":[23,266],"0.8":[25],"kb":[26],"poly(A)-containing":[27,253],"RNA":[28,44,105,125,158,180,254],"encoded":[29,79,104,179,255],"by":[30,108,256],"the":[31,34,43,53,59,68,92,98,102,117,124,154,162,176,194,199,208,225,233,236,243,257,260,267,273],"H-strand":[32,76,178,228,237,258,274],"mouse":[35,167],"mitochondrial":[36,209,261],"D-loop":[37,77,103,177,234,262],"region.":[38],"The":[39,75,120,215],"5'":[40],"end":[41,62],"maps":[45,63],"to":[46,52,64,204],"nucleotide":[47,65],"15417,":[48],"region":[50,78,197,263],"complementary":[51],"start":[54],"tRNA(Pro)":[56],"gene":[57],"3'":[60,99,195],"polyadenylated":[61],"16295":[66],"genome,":[69],"immediately":[70,240],"upstream":[71],"tRNA(Phe)":[73],"gene.":[74,246],"transcripts":[80],"similar":[82],"size":[83],"are":[84,106],"also":[85,265],"detected":[86],"in":[87,129,132,139,153,211,232],"other":[88],"vertebrate":[89],"systems.":[90],"In":[91],"mouse,":[93],"rat,":[94],"human":[96],"systems,":[97],"ends":[100],"preceded":[107],"conserved":[109,200],"sequences":[110],"AAUAAA,":[111],"AAUUAA,":[112],"or":[113,131,235],"AACUAA,":[114],"that":[115,175],"resemble":[116],"polyadenylation":[118],"signal.":[119],"steady-state":[121],"level":[122,155],"is":[126,159,221],"generally":[127],"low":[128],"dividing":[130],"vitro":[133],"cultured":[134],"cells,":[135],"markedly":[137],"higher":[138],"differentiated":[140],"tissues":[141],"like":[142],"liver,":[143],"kidney,":[144],"heart,":[145],"brain.":[147],"Furthermore,":[148],"an":[149],"over":[150],"10-fold":[151],"increase":[152],"this":[157,219],"observed":[160],"during":[161],"induced":[163],"differentiation":[164],"C2C12":[166],"myoblast":[168],"cells":[169],"into":[170],"myotubes.":[171],"These":[172],"results":[173],"suggest":[174],"may":[181],"yet":[183],"unknown":[184],"biological":[185],"functions.":[186],"A":[187],"20":[188],"base":[189],"pair":[190],"sequence":[192,201,231],"from":[193,207,224],"terminal":[196],"containing":[198],"motif":[202],"binds":[203],"protein":[206,220],"extracts":[210],"sequence-specific":[213],"manner.":[214],"binding":[216],"specificity":[217],"distinctly":[222],"different":[223],"previously":[226],"characterized":[227,250],"termination":[230,270],"transcription":[238],"terminator":[239],"downstream":[241],"16S":[244],"rRNA":[245],"Thus,":[247],"novel":[252],"putative":[268],"ultimate":[269],"site":[271],"for":[272],"transcription.":[275]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}
