{"id":"https://openalex.org/W2419259862","doi":"https://doi.org/10.1186/s13742-016-0132-7","title":"Recommendations on e-infrastructures for next-generation sequencing","display_name":"Recommendations on e-infrastructures for next-generation sequencing","publication_year":2016,"publication_date":"2016-06-07","ids":{"openalex":"https://openalex.org/W2419259862","doi":"https://doi.org/10.1186/s13742-016-0132-7","mag":"2419259862","pmid":"https://pubmed.ncbi.nlm.nih.gov/27267963","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4897895"},"language":"en","primary_location":{"id":"doi:10.1186/s13742-016-0132-7","doi":"https://doi.org/10.1186/s13742-016-0132-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13742-016-0132-7","pdf_url":"https://academic.oup.com/gigascience/article-pdf/5/1/s13742-016-0132-7/25512092/13742_2016_article_132.pdf","source":{"id":"https://openalex.org/S2735135405","display_name":"GigaScience","issn_l":"2047-217X","issn":["2047-217X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"GigaScience","raw_type":"journal-article"},"volume":null,"type":"review","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/gigascience/article-pdf/5/1/s13742-016-0132-7/25512092/13742_2016_article_132.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046663348","display_name":"Ola Spjuth","orcid":"https://orcid.org/0000-0002-8083-2864","observed_orcids":["https://orcid.org/0000-0002-8083-2864","https://orcid.org/0000-0002-2807-8796"]},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Ola Spjuth","raw_affiliation_strings":["Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, P.O. Box 591, SE-75124, Sweden. ola.spjuth@farmbio.uu.se","Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, P.O. Box 591, SE-75124 Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, P.O. Box 591, SE-75124, Sweden. ola.spjuth@farmbio.uu.se","institution_ids":["https://openalex.org/I123387679","https://openalex.org/I2800139495"]},{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, P.O. Box 591, SE-75124 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679","https://openalex.org/I2800139495"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042185060","display_name":"Erik Bongcam\u2010Rudloff","orcid":"https://orcid.org/0000-0002-1947-8288","observed_orcids":["https://orcid.org/0000-0002-1947-8288"]},"institutions":[{"id":"https://openalex.org/I298625061","display_name":"Swedish University of Agricultural Sciences","ror":"https://ror.org/02yy8x990","country_code":"SE","type":"education","lineage":["https://openalex.org/I298625061"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Erik Bongcam-Rudloff","raw_affiliation_strings":["SLU-Global Bioinformatics Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SLU-Global Bioinformatics Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden","institution_ids":["https://openalex.org/I298625061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002380660","display_name":"Johan Dahlberg","orcid":"https://orcid.org/0000-0001-6962-1460","observed_orcids":["https://orcid.org/0000-0001-6962-1460"]},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Johan Dahlberg","raw_affiliation_strings":["National Genomics Infrastructure, Science for Life Laboratory, Uppsala University, Stockholm, P.O. Box 1031, SE-17121, Sweden","National Genomics Infrastructure, Science for Life Laboratory, Uppsala University, P.O. Box 1031, SE-17121 Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Genomics Infrastructure, Science for Life Laboratory, Uppsala University, Stockholm, P.O. Box 1031, SE-17121, Sweden","institution_ids":["https://openalex.org/I123387679","https://openalex.org/I2800139495"]},{"raw_affiliation_string":"National Genomics Infrastructure, Science for Life Laboratory, Uppsala University, P.O. Box 1031, SE-17121 Stockholm, Sweden","institution_ids":["https://openalex.org/I123387679","https://openalex.org/I2800139495"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001646323","display_name":"Martin Dahl\u00f6","orcid":"https://orcid.org/0000-0001-5447-9465","observed_orcids":["https://orcid.org/0000-0001-5447-9465"]},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Martin Dahl\u00f6","raw_affiliation_strings":["Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, P.O. Box 591, SE-75124, Sweden","Science for Life Laboratory, Uppsala University, Husargatan 3, Uppsala, SE-75123, Sweden","Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, P.O. Box 591, SE-75124 Uppsala, Sweden","Science for Life Laboratory, Uppsala University, Husargatan 3, SE-75123 Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, P.O. Box 591, SE-75124, Sweden","institution_ids":["https://openalex.org/I123387679","https://openalex.org/I2800139495"]},{"raw_affiliation_string":"Science for Life Laboratory, Uppsala University, Husargatan 3, Uppsala, SE-75123, Sweden","institution_ids":["https://openalex.org/I123387679","https://openalex.org/I2800139495"]},{"raw_affiliation_string":"Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, P.O. Box 591, SE-75124 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679","https://openalex.org/I2800139495"]},{"raw_affiliation_string":"Science for Life Laboratory, Uppsala University, Husargatan 3, SE-75123 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679","https://openalex.org/I2800139495"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030352001","display_name":"Aleksi Kallio","orcid":"https://orcid.org/0000-0002-6278-5160","observed_orcids":["https://orcid.org/0000-0002-6278-5160"]},"institutions":[{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Aleksi Kallio","raw_affiliation_strings":["CSC - IT Center for Science Ltd., Espoo, P.O. Box 405, FI-02101, Finland","CSC - IT Center for Science Ltd., P.O. Box 405, FI-02101 Espoo, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSC - IT Center for Science Ltd., Espoo, P.O. Box 405, FI-02101, Finland","institution_ids":["https://openalex.org/I4210150043"]},{"raw_affiliation_string":"CSC - IT Center for Science Ltd., P.O. Box 405, FI-02101 Espoo, Finland","institution_ids":["https://openalex.org/I4210150043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047833562","display_name":"Luca Pireddu","orcid":"https://orcid.org/0000-0002-4663-5613","observed_orcids":["https://orcid.org/0000-0002-4663-5613"]},"institutions":[{"id":"https://openalex.org/I172446870","display_name":"University of Cagliari","ror":"https://ror.org/003109y17","country_code":"IT","type":"education","lineage":["https://openalex.org/I172446870"]},{"id":"https://openalex.org/I2800759272","display_name":"Center for Advanced Studies Research and Development in Sardinia","ror":"https://ror.org/03jdxdk20","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2800759272"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Pireddu","raw_affiliation_strings":["CRS4, Polaris, Loc. Piscina Manna Ed. 1, Pula, 09010, Italy","University of Cagliari, Cagliari, 09124, Italy","CRS4, Polaris, Loc. Piscina Manna Ed. 1, 09010 Pula, Italy","University of Cagliari, 09124 Cagliari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CRS4, Polaris, Loc. Piscina Manna Ed. 1, Pula, 09010, Italy","institution_ids":["https://openalex.org/I2800759272"]},{"raw_affiliation_string":"University of Cagliari, Cagliari, 09124, Italy","institution_ids":["https://openalex.org/I172446870"]},{"raw_affiliation_string":"CRS4, Polaris, Loc. Piscina Manna Ed. 1, 09010 Pula, Italy","institution_ids":["https://openalex.org/I2800759272"]},{"raw_affiliation_string":"University of Cagliari, 09124 Cagliari, Italy","institution_ids":["https://openalex.org/I172446870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006807738","display_name":"Francesco Vezzi","orcid":"https://orcid.org/0000-0002-0243-0018","observed_orcids":["https://orcid.org/0000-0002-0243-0018"]},"institutions":[{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Francesco Vezzi","raw_affiliation_strings":["Science for Life Laboratory, Stockholm University, Stockholm, SE-17121, Sweden","Science for Life Laboratory, Stockholm University, P.O. Box 1031, SE-17121 Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Science for Life Laboratory, Stockholm University, Stockholm, SE-17121, Sweden","institution_ids":["https://openalex.org/I161593684","https://openalex.org/I2800139495"]},{"raw_affiliation_string":"Science for Life Laboratory, Stockholm University, P.O. Box 1031, SE-17121 Stockholm, Sweden","institution_ids":["https://openalex.org/I161593684","https://openalex.org/I2800139495"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084707312","display_name":"Eija Korpelainen","orcid":"https://orcid.org/0000-0002-4406-5602","observed_orcids":["https://orcid.org/0000-0002-4406-5602"]},"institutions":[{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Eija Korpelainen","raw_affiliation_strings":["CSC - IT Center for Science Ltd., Espoo, P.O. Box 405, FI-02101, Finland","CSC - IT Center for Science Ltd., P.O. Box 405, FI-02101 Espoo, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSC - IT Center for Science Ltd., Espoo, P.O. Box 405, FI-02101, Finland","institution_ids":["https://openalex.org/I4210150043"]},{"raw_affiliation_string":"CSC - IT Center for Science Ltd., P.O. Box 405, FI-02101 Espoo, Finland","institution_ids":["https://openalex.org/I4210150043"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5046663348"],"corresponding_institution_ids":["https://openalex.org/I123387679","https://openalex.org/I2800139495"],"apc_list":{"value":2638,"currency":"USD","value_usd":2638},"apc_paid":{"value":1428,"currency":"EUR","value_usd":1540},"fwci":0.7047,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.65306122,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":99},"biblio":{"volume":"5","issue":"1","first_page":"26","last_page":"26"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9477999806404114,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9477999806404114,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.024000000208616257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.019300000742077827,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cyberinfrastructure","display_name":"cyberinfrastructure","score":0.9359999895095825},{"id":"https://openalex.org/keywords/next-generation-sequencing","display_name":"next-generation sequencing","score":0.984000027179718},{"id":"https://openalex.org/keywords/sequencing-data-analysis","display_name":"sequencing data analysis","score":0.6700000166893005},{"id":"https://openalex.org/keywords/data-preprocessing","display_name":"data preprocessing","score":0.7720000147819519},{"id":"https://openalex.org/keywords/data-archiving","display_name":"data archiving","score":0.7879999876022339},{"id":"https://openalex.org/keywords/long-term-storage","display_name":"long-term storage","score":0.7009999752044678},{"id":"https://openalex.org/keywords/computational-resources","display_name":"computational resources","score":0.7070000171661377},{"id":"https://openalex.org/keywords/storage-resources","display_name":"storage resources","score":0.746999979019165},{"id":"https://openalex.org/keywords/network-requirements","display_name":"network requirements","score":0.6869999766349792},{"id":"https://openalex.org/keywords/software-stack","display_name":"software stack","score":0.9300000071525574},{"id":"https://openalex.org/keywords/research-data-management","display_name":"research data management","score":0.49900001287460327}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6736262440681458},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.620081901550293},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5294805765151978},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.5207114815711975},{"id":"https://openalex.org/C191172861","wikidata":"https://www.wikidata.org/wiki/Q7899321","display_name":"Upstream (networking)","level":2,"score":0.5144469738006592},{"id":"https://openalex.org/C184356942","wikidata":"https://www.wikidata.org/wiki/Q830382","display_name":"Best practice","level":2,"score":0.47396203875541687},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4438457190990448},{"id":"https://openalex.org/C2776207758","wikidata":"https://www.wikidata.org/wiki/Q5303302","display_name":"Downstream (manufacturing)","level":2,"score":0.4407285451889038},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4345383942127228},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.42653968930244446},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.4176265597343445},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.415621817111969},{"id":"https://openalex.org/C195094911","wikidata":"https://www.wikidata.org/wiki/Q14167904","display_name":"Process management","level":1,"score":0.36990082263946533},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.15961405634880066},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1558917760848999},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.13157835602760315},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.10679924488067627},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s13742-016-0132-7","doi":"https://doi.org/10.1186/s13742-016-0132-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13742-016-0132-7","pdf_url":"https://academic.oup.com/gigascience/article-pdf/5/1/s13742-016-0132-7/25512092/13742_2016_article_132.pdf","source":{"id":"https://openalex.org/S2735135405","display_name":"GigaScience","issn_l":"2047-217X","issn":["2047-217X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"GigaScience","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:3864766","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4897895","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4897895","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4897895","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gigascience","raw_type":"Text"},{"id":"pmid:27267963","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27267963","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"GigaScience","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/s13742-016-0132-7","doi":"https://doi.org/10.1186/s13742-016-0132-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13742-016-0132-7","pdf_url":"https://academic.oup.com/gigascience/article-pdf/5/1/s13742-016-0132-7/25512092/13742_2016_article_132.pdf","source":{"id":"https://openalex.org/S2735135405","display_name":"GigaScience","issn_l":"2047-217X","issn":["2047-217X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"GigaScience","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6773999929428101,"id":"https://metadata.un.org/sdg/9"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1965398892","display_name":null,"funder_award_id":"KBBE.2011.3.6-02","funder_id":"https://openalex.org/F4320334960","funder_display_name":"Seventh Framework Programme"},{"id":"https://openalex.org/G2731989626","display_name":null,"funder_award_id":"BM1006","funder_id":"https://openalex.org/F4320334960","funder_display_name":"Seventh Framework Programme"},{"id":"https://openalex.org/G513697287","display_name":null,"funder_award_id":"KBBE.2011.3.6-02","funder_id":"https://openalex.org/F2094871694","funder_display_name":"Business Events Perth"},{"id":"https://openalex.org/G8930047229","display_name":null,"funder_award_id":"BM1006","funder_id":"https://openalex.org/F2094871694","funder_display_name":"Business Events Perth"}],"funders":[{"id":"https://openalex.org/F2094871694","display_name":"Business Events Perth","ror":null},{"id":"https://openalex.org/F4320313987","display_name":"Universit\u00e0 degli Studi di Cagliari","ror":"https://ror.org/003109y17"},{"id":"https://openalex.org/F4320317161","display_name":"Swedish e-Science Research Centre","ror":"https://ror.org/01e59yk92"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320325677","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22"},{"id":"https://openalex.org/F4320334960","display_name":"Seventh Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320336376","display_name":"Uppsala Multidisciplinary Center for Advanced Computational Science","ror":"https://ror.org/0554ckj21"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2419259862.pdf","grobid_xml":"https://content.openalex.org/works/W2419259862.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1480091941","https://openalex.org/W1891617912","https://openalex.org/W1919257374","https://openalex.org/W1966822396","https://openalex.org/W1966936568","https://openalex.org/W1989292852","https://openalex.org/W2004794404","https://openalex.org/W2034337154","https://openalex.org/W2065783627","https://openalex.org/W2085522429","https://openalex.org/W2102231480","https://openalex.org/W2105821863","https://openalex.org/W2113649367","https://openalex.org/W2118526609","https://openalex.org/W2119404103","https://openalex.org/W2119818111","https://openalex.org/W2128556733","https://openalex.org/W2141978878","https://openalex.org/W2145278067","https://openalex.org/W2150424267","https://openalex.org/W2159084616","https://openalex.org/W2160363604","https://openalex.org/W2161645441","https://openalex.org/W2165272228","https://openalex.org/W2168133698","https://openalex.org/W2169594074","https://openalex.org/W2172194140","https://openalex.org/W2189371416"],"related_works":["https://openalex.org/W2102231480","https://openalex.org/W1489424169","https://openalex.org/W1982981337","https://openalex.org/W2182444885","https://openalex.org/W2202066692","https://openalex.org/W2795934600","https://openalex.org/W1987821212","https://openalex.org/W2046061734","https://openalex.org/W2069862242","https://openalex.org/W7096070771"],"abstract_inverted_index":{"With":[0],"ever-increasing":[1],"amounts":[2],"of":[3,42,71,128],"data":[4,43,47,103,125],"being":[5],"produced":[6],"by":[7,145],"next-generation":[8],"sequencing":[9,97],"(NGS)":[10],"experiments,":[11],"the":[12,28,34,40,80,124,156],"requirements":[13,135],"placed":[14,162],"on":[15,27,62,163],"supporting":[16],"e-infrastructures":[17],"have":[18],"grown.":[19],"In":[20],"this":[21],"work,":[22],"we":[23,136],"provide":[24],"recommendations":[25],"based":[26],"collective":[29],"experiences":[30],"from":[31],"participants":[32],"in":[33,79],"EU":[35],"COST":[36],"Action":[37],"SeqAhead":[38],"for":[39,83,102],"tasks":[41],"preprocessing,":[44],"upstream":[45],"processing,":[46],"delivery,":[48],"and":[49,57,64,74,91,95,99,115,141,158,167],"downstream":[50],"analysis,":[51,72],"as":[52,54],"well":[53],"long-term":[55],"storage":[56,65],"archiving.":[58],"We":[59],"cover":[60],"demands":[61,127],"computational":[63],"resources,":[66],"networks,":[67],"software":[68],"stacks,":[69],"automation":[70],"education,":[73],"also":[75],"discuss":[76],"emerging":[77],"trends":[78],"field.":[81],"E-infrastructures":[82],"NGS":[84],"require":[85],"substantial":[86],"effort":[87],"to":[88,110,122,131,155],"set":[89],"up":[90],"maintain":[92],"over":[93],"time,":[94],"with":[96],"technologies":[98],"best":[100],"practices":[101],"analysis":[104,126],"evolving":[105],"rapidly":[106],"it":[107,151],"is":[108],"important":[109],"prioritize":[111],"both":[112],"processing":[113],"capacity":[114],"e-infrastructure":[116,139],"flexibility":[117],"when":[118],"making":[119],"strategic":[120],"decisions":[121],"support":[123],"tomorrow.":[129],"Due":[130],"increasingly":[132],"demanding":[133],"technical":[134],"recommend":[137],"that":[138],"development":[140],"maintenance":[142],"be":[143,150,161],"handled":[144],"a":[146],"professional":[147],"service":[148],"unit,":[149],"internal":[152],"or":[153],"external":[154],"organization,":[157],"emphasis":[159],"should":[160],"collaboration":[164],"between":[165],"researchers":[166],"IT":[168],"professionals.":[169]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3}],"updated_date":"2026-11-05T12:25:35.769452","created_date":"2016-06-24T00:00:00"}
