{"id":"https://openalex.org/W2406498053","doi":"https://doi.org/10.1007/978-1-4939-1142-4_11","title":"Global Ubiquitination Analysis by SILAC in Mammalian Cells","display_name":"Global Ubiquitination Analysis by SILAC in Mammalian Cells","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2406498053","doi":"https://doi.org/10.1007/978-1-4939-1142-4_11","mag":"2406498053","pmid":"https://pubmed.ncbi.nlm.nih.gov/25059610"},"language":"en","primary_location":{"id":"doi:10.1007/978-1-4939-1142-4_11","doi":"https://doi.org/10.1007/978-1-4939-1142-4_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-4939-1142-4_11","pdf_url":null,"source":{"id":"https://openalex.org/S4210172139","display_name":"Methods in molecular biology","issn_l":"1064-3745","issn":["1064-3745","1940-6029"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-3","vabb-shw"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Molecular Biology","raw_type":"book-chapter"},"volume":{"id":"https://openalex.org/W2505802419","display_name":"Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009542446","display_name":"Zhiping Wu","orcid":"https://orcid.org/0009-0006-2666-0754","observed_orcids":["https://orcid.org/0009-0006-2666-0754","https://orcid.org/0000-0002-5554-3681"]},"institutions":[{"id":"https://openalex.org/I1313298211","display_name":"St. Jude Children's Research Hospital","ror":"https://ror.org/02r3e0967","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1313298211","https://openalex.org/I2802152183"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiping Wu","raw_affiliation_strings":["Department of Structural Biology, St. Jude Proteomics Facility, St Jude Children's Research Hospital, Memphis, TN, 38105, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Structural Biology, St. Jude Proteomics Facility, St Jude Children's Research Hospital, Memphis, TN, 38105, USA","institution_ids":["https://openalex.org/I1313298211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064985797","display_name":"Chan Hyun Na","orcid":"https://orcid.org/0000-0002-3622-2938","observed_orcids":["https://orcid.org/0000-0002-3622-2938"]},"institutions":[{"id":"https://openalex.org/I1313298211","display_name":"St. Jude Children's Research Hospital","ror":"https://ror.org/02r3e0967","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1313298211","https://openalex.org/I2802152183"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chan Hyun Na","raw_affiliation_strings":["Department of Developmental Neurobiology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA","Department of Structural Biology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Developmental Neurobiology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA","institution_ids":["https://openalex.org/I1313298211"]},{"raw_affiliation_string":"Department of Structural Biology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA","institution_ids":["https://openalex.org/I1313298211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041058568","display_name":"Haiyan Tan","orcid":"https://orcid.org/0000-0001-6687-2563","observed_orcids":["https://orcid.org/0000-0001-6687-2563"]},"institutions":[{"id":"https://openalex.org/I1313298211","display_name":"St. Jude Children's Research Hospital","ror":"https://ror.org/02r3e0967","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1313298211","https://openalex.org/I2802152183"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haiyan Tan","raw_affiliation_strings":["Department of Developmental Neurobiology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA","Department of Structural Biology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Developmental Neurobiology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA","institution_ids":["https://openalex.org/I1313298211"]},{"raw_affiliation_string":"Department of Structural Biology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA","institution_ids":["https://openalex.org/I1313298211"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005061089","display_name":"Junmin Peng","orcid":"https://orcid.org/0000-0003-0472-7648","observed_orcids":["https://orcid.org/0000-0003-0472-7648","https://orcid.org/0000-0002-4043-8475"]},"institutions":[{"id":"https://openalex.org/I1313298211","display_name":"St. Jude Children's Research Hospital","ror":"https://ror.org/02r3e0967","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1313298211","https://openalex.org/I2802152183"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Junmin Peng","raw_affiliation_strings":["Department of Developmental Neurobiology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA","Department of Structural Biology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Developmental Neurobiology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA","institution_ids":["https://openalex.org/I1313298211"]},{"raw_affiliation_string":"Department of Structural Biology, St. Jude Proteomics Facility, St Jude Children\u2019s Research Hospital, Memphis, TN, 38105, USA","institution_ids":["https://openalex.org/I1313298211"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5005061089"],"corresponding_institution_ids":["https://openalex.org/I1313298211"],"apc_list":null,"apc_paid":null,"fwci":1.2653,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.80636972,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":94},"biblio":{"volume":"1188","issue":null,"first_page":"149","last_page":"160"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.018300000578165054,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ubiquitination","display_name":"ubiquitination","score":0.9860000014305115},{"id":"https://openalex.org/keywords/ubiquitome","display_name":"ubiquitome","score":0.9800000190734863},{"id":"https://openalex.org/keywords/silac","display_name":"SILAC","score":0.6980000138282776},{"id":"https://openalex.org/keywords/stable-isotope-labeling","display_name":"stable isotope labeling","score":0.8420000076293945},{"id":"https://openalex.org/keywords/mammalian-cells","display_name":"mammalian cells","score":0.7919999957084656},{"id":"https://openalex.org/keywords/post-translational-modification","display_name":"post-translational modification","score":0.800000011920929},{"id":"https://openalex.org/keywords/quantitative-proteomics","display_name":"quantitative proteomics","score":0.7710000276565552}],"concepts":[{"id":"https://openalex.org/C34905852","wikidata":"https://www.wikidata.org/wiki/Q3943646","display_name":"Stable isotope labeling by amino acids in cell culture","level":4,"score":0.9981887340545654},{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.6960755586624146},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6951205730438232},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5480319857597351},{"id":"https://openalex.org/C80311884","wikidata":"https://www.wikidata.org/wiki/Q7268939","display_name":"Quantitative proteomics","level":4,"score":0.5478761196136475},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.4588845372200012},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44662246108055115},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.42309045791625977},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.40981462597846985},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37402498722076416},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002846","descriptor_name":"Chromatography, Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002852","descriptor_name":"Chromatography, Ion Exchange","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006033","descriptor_name":"Glycylglycine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007553","descriptor_name":"Isotope Labeling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057809","descriptor_name":"HEK293 Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/978-1-4939-1142-4_11","doi":"https://doi.org/10.1007/978-1-4939-1142-4_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-4939-1142-4_11","pdf_url":null,"source":{"id":"https://openalex.org/S4210172139","display_name":"Methods in molecular biology","issn_l":"1064-3745","issn":["1064-3745","1940-6029"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-3","vabb-shw"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Molecular Biology","raw_type":"book-chapter"},{"id":"pmid:25059610","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25059610","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in molecular biology (Clifton, N.J.)","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G4795180858","display_name":"Proteomics identification of ubiquitin enzyme substrates","funder_award_id":"R21NS081571","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G4831889684","display_name":null,"funder_award_id":"NS081571","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"}],"funders":[{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1967944932","https://openalex.org/W1971152108","https://openalex.org/W1976685504","https://openalex.org/W1978720506","https://openalex.org/W1980468156","https://openalex.org/W1981281869","https://openalex.org/W1990167863","https://openalex.org/W1992848590","https://openalex.org/W2013268206","https://openalex.org/W2018141733","https://openalex.org/W2022636942","https://openalex.org/W2026465178","https://openalex.org/W2035094622","https://openalex.org/W2048611034","https://openalex.org/W2061184183","https://openalex.org/W2065243824","https://openalex.org/W2080553628","https://openalex.org/W2081736950","https://openalex.org/W2083253874","https://openalex.org/W2096057003","https://openalex.org/W2097343327","https://openalex.org/W2101349818","https://openalex.org/W2106615378","https://openalex.org/W2131981022","https://openalex.org/W2134095164","https://openalex.org/W2143538182","https://openalex.org/W2146548905","https://openalex.org/W2147917253","https://openalex.org/W2154703935","https://openalex.org/W2172012754"],"related_works":["https://openalex.org/W1581478399","https://openalex.org/W1978720506","https://openalex.org/W28513596","https://openalex.org/W1594750612","https://openalex.org/W58076593","https://openalex.org/W1482121620","https://openalex.org/W2586156191","https://openalex.org/W2406479973","https://openalex.org/W7100481045","https://openalex.org/W7223143442"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
