{"id":"https://openalex.org/W2403440808","doi":null,"title":"An advanced strategy for integration of biological measurement data","display_name":"An advanced strategy for integration of biological measurement data","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2403440808","mag":"2403440808"},"language":"en","primary_location":{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/4860b4f9-d7bb-4c2b-8d9e-d136e1df5e9f","doi":null,"is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/4860b4f9-d7bb-4c2b-8d9e-d136e1df5e9f","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Masuya, H, Gkoutos, G V, Tanaka, N, Waki, K, Okuda, Y, Kushida, T, Kobayashi, N, Doi, K, Kozaki, K & Hoehndorf, R 2011, An advanced strategy for integration of biological measurement data. in O Bodenreider , M E Martone & A Ruttenberg (eds), ICBO-2011 : Proceedings of the 2nd International Conference on Biomedical Ontology. CEUR Workshop Proceedings, vol. 833, CEUR-WS.org, pp. 79-86, International Conference on Biomedical Ontology 2011, Buffalo, United States, 26/07/11.","raw_type":"contributionToPeriodical"},"volume":null,"type":"conference-paper","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://research.birmingham.ac.uk/en/publications/4860b4f9-d7bb-4c2b-8d9e-d136e1df5e9f","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059040741","display_name":"Hiroshi Masuya","orcid":"https://orcid.org/0000-0002-3392-466X","observed_orcids":["https://orcid.org/0000-0002-3392-466X"]},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masuya, Hiroshi","raw_affiliation_strings":["RIKEN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089900113","display_name":"Georgios V. Gkoutos","orcid":"https://orcid.org/0000-0002-2061-091X","observed_orcids":["https://orcid.org/0000-0002-2061-091X"]},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gkoutos, Georgios V","raw_affiliation_strings":["Univ. of Cambridge"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. of Cambridge","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056027969","display_name":"Nobuhiko Tanaka","orcid":"https://orcid.org/0000-0002-9568-9917","observed_orcids":["https://orcid.org/0000-0002-9568-9917"]},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tanaka, Nobuhiko","raw_affiliation_strings":["RIKEN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070350914","display_name":"Kazunori Waki","orcid":"https://orcid.org/0000-0001-7311-7208","observed_orcids":["https://orcid.org/0000-0001-7311-7208"]},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Waki, Kazunori","raw_affiliation_strings":["RIKEN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Okuda, Yoshihiro","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Okuda, Yoshihiro","raw_affiliation_strings":["NalaPro Technologies. Inc"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NalaPro Technologies. Inc","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035350400","display_name":"Tatsuya Kushida","orcid":"https://orcid.org/0000-0002-0784-4113","observed_orcids":["https://orcid.org/0000-0002-0784-4113"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kushida, Tatsuya","raw_affiliation_strings":["NalaPro Technologies. Inc"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NalaPro Technologies. Inc","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Kobayashi, Norio","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kobayashi, Norio","raw_affiliation_strings":["RIKEN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090735168","display_name":"Koji Doi","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Doi, Koji","raw_affiliation_strings":["RIKEN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051448264","display_name":"Kouji Kozaki","orcid":"https://orcid.org/0000-0003-4578-4980","observed_orcids":["https://orcid.org/0000-0003-4578-4980"]},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kozaki, Kouji","raw_affiliation_strings":["Osaka -University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osaka -University","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043808311","display_name":"Robert Hoehndorf","orcid":"https://orcid.org/0000-0001-8149-5890","observed_orcids":["https://orcid.org/0000-0001-8149-5890"]},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hoehndorf, Robert","raw_affiliation_strings":["Univ. of Cambridge"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. of Cambridge","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.2046,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.72861357,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":97},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9315999746322632,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9315999746322632,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.06589999794960022,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology-integration","display_name":"ontology integration","score":0.6790000200271606},{"id":"https://openalex.org/keywords/measurement-quality","display_name":"measurement quality","score":0.546999990940094},{"id":"https://openalex.org/keywords/quality-value","display_name":"quality value","score":0.656000018119812},{"id":"https://openalex.org/keywords/ordinal-comparison","display_name":"ordinal comparison","score":0.5099999904632568},{"id":"https://openalex.org/keywords/cross-species-data-integration","display_name":"cross-species data integration","score":0.7059999704360962},{"id":"https://openalex.org/keywords/interoperability","display_name":"interoperability","score":0.6499999761581421},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"upper ontology","score":0.6809999942779541}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7158540487289429},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6809440851211548},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.661801815032959},{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.6167284250259399},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5940302014350891},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.4765225648880005},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.45423218607902527},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4511706531047821},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.42547863721847534},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.352786660194397},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3080674409866333},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.143096923828125},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13547292351722717},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.08580031991004944},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.07084974646568298},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/4860b4f9-d7bb-4c2b-8d9e-d136e1df5e9f","doi":null,"is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/4860b4f9-d7bb-4c2b-8d9e-d136e1df5e9f","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Masuya, H, Gkoutos, G V, Tanaka, N, Waki, K, Okuda, Y, Kushida, T, Kobayashi, N, Doi, K, Kozaki, K & Hoehndorf, R 2011, An advanced strategy for integration of biological measurement data. in O Bodenreider , M E Martone & A Ruttenberg (eds), ICBO-2011 : Proceedings of the 2nd International Conference on Biomedical Ontology. CEUR Workshop Proceedings, vol. 833, CEUR-WS.org, pp. 79-86, International Conference on Biomedical Ontology 2011, Buffalo, United States, 26/07/11.","raw_type":"contributionToPeriodical"}],"best_oa_location":{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/4860b4f9-d7bb-4c2b-8d9e-d136e1df5e9f","doi":null,"is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/4860b4f9-d7bb-4c2b-8d9e-d136e1df5e9f","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Masuya, H, Gkoutos, G V, Tanaka, N, Waki, K, Okuda, Y, Kushida, T, Kobayashi, N, Doi, K, Kozaki, K & Hoehndorf, R 2011, An advanced strategy for integration of biological measurement data. in O Bodenreider , M E Martone & A Ruttenberg (eds), ICBO-2011 : Proceedings of the 2nd International Conference on Biomedical Ontology. CEUR Workshop Proceedings, vol. 833, CEUR-WS.org, pp. 79-86, International Conference on Biomedical Ontology 2011, Buffalo, United States, 26/07/11.","raw_type":"contributionToPeriodical"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1568122425","https://openalex.org/W1576608841","https://openalex.org/W1765263880","https://openalex.org/W2022451103","https://openalex.org/W2057720927","https://openalex.org/W2113142309","https://openalex.org/W2117202466","https://openalex.org/W2124991490","https://openalex.org/W2126434293","https://openalex.org/W2146871965","https://openalex.org/W2175268987"],"related_works":["https://openalex.org/W4235343802","https://openalex.org/W2049302531","https://openalex.org/W7097140404","https://openalex.org/W2022451103","https://openalex.org/W2025081265","https://openalex.org/W2189309068","https://openalex.org/W2116807975","https://openalex.org/W2081478874","https://openalex.org/W7095343990","https://openalex.org/W2135200210"],"abstract_inverted_index":{"Aiming":[0],"at":[1],"integration":[2],"of":[3,25,36,50,53,61,67,74,76],"measurement":[4,58,99],"data":[5],"across":[6],"various":[7],"biological":[8,26,98],"experiments,":[9],"we":[10,88],"investigated":[11],"a":[12,51],"methodology":[13],"for":[14,23,93],"expanding":[15],"the":[16,30,42],"Phenotypic":[17],"Quality":[18],"Ontology":[19],"(PATO),":[20],"commonly":[21],"used":[22],"descriptions":[24],"phenotypes,":[27],"based":[28,80],"on":[29,81],"YAMATO":[31,43],"top-level":[32,83],"ontology.":[33],"The":[34],"mapping":[35],"ontology":[37],"terms":[38],"from":[39],"PATO":[40],"to":[41,56],"framework":[44],"brings":[45],"several":[46],"benefits,":[47],"including:":[48],"introduction":[49],"classification":[52],"quality":[54,77],"values":[55,69],"represent":[57],"scales;":[59],"distinction":[60],"different":[62,82],"contexts":[63],"in":[64],"which":[65],"comparisons":[66],"ordinal":[68],"are":[70],"made;":[71],"and":[72,96],"establishment":[73],"interoperability":[75],"description":[78],"formalisms":[79],"ontologies.":[84],"In":[85],"this":[86],"study,":[87],"propose":[89],"an":[90],"ontological":[91],"basis":[92],"integrating":[94],"cross-species":[95],"cross-experimental":[97],"data.":[100]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2016-06-24T00:00:00"}
