{"id":"https://openalex.org/W2399646283","doi":null,"title":"[Meta-Mesh: metagenomic data analysis system].","display_name":"[Meta-Mesh: metagenomic data analysis system].","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2399646283","mag":"2399646283","pmid":"https://pubmed.ncbi.nlm.nih.gov/24818475"},"language":"zh","primary_location":{"id":"pmid:24818475","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24818475","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","raw_type":"Journal Article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042843762","display_name":"Xiaoquan Su","orcid":"https://orcid.org/0000-0003-2144-1991","observed_orcids":["https://orcid.org/0000-0003-2144-1991"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiaoquan Su","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055879350","display_name":"Baoxing Song","orcid":"https://orcid.org/0000-0003-1478-9228","observed_orcids":["https://orcid.org/0000-0003-1478-9228"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Baoxing Song","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101480047","display_name":"Xuetao Wang","orcid":"https://orcid.org/0000-0002-9743-4678","observed_orcids":["https://orcid.org/0000-0002-9743-4678"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xuetao Wang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048567079","display_name":"Xinle Ma","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xinle Ma","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081633974","display_name":"Jian Xu","orcid":"https://orcid.org/0000-0002-0548-8477","observed_orcids":["https://orcid.org/0000-0002-0548-8477","https://orcid.org/0000-0001-5287-1009"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jian Xu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5076346443","display_name":"Kang Ning","orcid":"https://orcid.org/0000-0003-3325-5387","observed_orcids":["https://orcid.org/0000-0003-3325-5387","https://orcid.org/0000-0002-5628-8555"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kang Ning","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1101,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.41010733,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"30","issue":"1","first_page":"6","last_page":"17"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.0031999999191612005,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.00139999995008111,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbial-community-comparison","display_name":"microbial community comparison","score":0.9190000295639038},{"id":"https://openalex.org/keywords/taxonomic-annotation","display_name":"taxonomic annotation","score":0.8119999766349792},{"id":"https://openalex.org/keywords/sample-clustering","display_name":"sample clustering","score":0.6100000143051147}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9639155864715576},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6296080350875854},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5210732221603394},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.509472668170929},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.4964764714241028},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4910860061645508},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.49079570174217224},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.44761237502098083},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39234912395477295},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3451315760612488},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23142433166503906},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15836429595947266},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.12687629461288452},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.07545006275177002},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"pmid:24818475","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24818475","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","raw_type":"Journal Article"},{"id":"mag:2399646283","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24818475","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"PubMed","raw_type":null},{"id":"mag:3149172300","doi":null,"is_oa":false,"landing_page_url":"http://www.cqvip.com/QK/92387X/201401/48449637.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306555132","display_name":"\u751f\u7269\u5de5\u7a0b\u5b66\u62a5","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"\u751f\u7269\u5de5\u7a0b\u5b66\u62a5","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1972168066","https://openalex.org/W1980184764","https://openalex.org/W1980489609","https://openalex.org/W1988925586","https://openalex.org/W1989348205","https://openalex.org/W2008194879","https://openalex.org/W2008756528","https://openalex.org/W2014444740","https://openalex.org/W2017917533","https://openalex.org/W2034383505","https://openalex.org/W2038838030","https://openalex.org/W2042074642","https://openalex.org/W2058331194","https://openalex.org/W2073690652","https://openalex.org/W2091922579","https://openalex.org/W2092983624","https://openalex.org/W2101501929","https://openalex.org/W2104890139","https://openalex.org/W2105815973","https://openalex.org/W2108718991","https://openalex.org/W2109196993","https://openalex.org/W2109391327","https://openalex.org/W2113129488","https://openalex.org/W2116299630","https://openalex.org/W2116895571","https://openalex.org/W2122414480","https://openalex.org/W2123372159","https://openalex.org/W2126218947","https://openalex.org/W2136850043","https://openalex.org/W2149202898","https://openalex.org/W2149573313","https://openalex.org/W2155066423","https://openalex.org/W2167062509","https://openalex.org/W2167639526","https://openalex.org/W2168593414","https://openalex.org/W2170024099","https://openalex.org/W2338541571"],"related_works":["https://openalex.org/W2061277554","https://openalex.org/W3149172300","https://openalex.org/W2109196993","https://openalex.org/W1613969148","https://openalex.org/W4288471021","https://openalex.org/W2257567325","https://openalex.org/W1511782473","https://openalex.org/W6885083514","https://openalex.org/W1830741397","https://openalex.org/W2113129488"],"abstract_inverted_index":{"With":[0],"the":[1,42,77,80,86,127,130,167,185,253],"current":[2,50],"accumulation":[3],"of":[4,17,28,56,88,98,129,132,197,235,255],"metagenome":[5],"data,":[6],"it":[7],"is":[8],"possible":[9],"to":[10,40,84,106,117,125,251,271],"build":[11,205],"an":[12],"integrated":[13],"platform":[14,153,193],"for":[15,74,216,238],"processing":[16],"rigorously":[18],"selected":[19],"metagenomic":[20,31,57,89,147,164,182,203,258],"samples":[21,32,58,122,183,218,250],"(also":[22],"referred":[23],"as":[24,61,264],"\"metagenomic":[25],"communities\"":[26],"here)":[27],"interests.":[29],"Any":[30],"could":[33,91,155,201],"then":[34,214],"be":[35],"searched":[36],"against":[37,219],"this":[38,136],"database":[39,148,168,221,266],"find":[41,126],"most":[43],"similar":[44,120,163,217,276],"sample(s).":[45],"However,":[46],"on":[47,244],"one":[48],"hand,":[49,79],"databases":[51],"with":[52],"a":[53,94,114,140,146,195,223,265],"large":[54,115],"number":[55],"mostly":[59],"serve":[60,263],"data":[62,90,268],"repositories":[63],"but":[64],"not":[65],"well":[66,180],"annotated":[67,181],"database,":[68],"and":[69,124,149,157,161,179,188,213,227,240,267,274],"only":[70,92],"offer":[71],"few":[72,81,95],"functions":[73],"analysis.":[75,259],"On":[76],"other":[78],"available":[82],"methods":[83],"measure":[85],"similarity":[87,245],"compare":[93,160,208],"pre-defined":[96],"set":[97],"metagenome.":[99],"It":[100],"has":[101],"long":[102],"been":[103],"intriguing":[104],"scientists":[105],"effectively":[107],"calculate":[108],"similarities":[109],"between":[110],"microbial":[111],"communities":[112],"in":[113,210,257],"repository,":[116],"examine":[118],"how":[119],"these":[121,133],"are":[123],"correlation":[128],"meta-information":[131],"samples.":[134,165],"In":[135,166],"work":[137],"we":[138,170],"propose":[139],"novel":[141],"system,":[142],"Meta-Mesh,":[143],"which":[144,200],"includes":[145],"its":[150,220],"companion":[151],"analysis":[152,192,269],"that":[154],"systematically":[156],"efficiently":[158],"analyze,":[159],"search":[162,215,237],"part,":[169],"have":[171],"collected":[172],"more":[173],"than":[174],"7":[175],"000":[176],"high":[177],"quality":[178],"from":[184],"public":[186],"domain":[187],"in-house":[189],"facilities.":[190],"The":[191],"supplies":[194],"list":[196],"online":[198],"tools":[199],"accept":[202],"samples,":[204],"taxonomical":[206],"annotations,":[207],"sample":[209],"multiple":[211],"angle,":[212],"by":[222],"fast":[224],"indexing":[225],"strategy":[226],"scoring":[228],"function.":[229],"We":[230],"also":[231],"used":[232],"case":[233],"studies":[234],"\"database":[236],"identification\"":[239],"\"samples":[241],"clustering":[242],"based":[243],"matrix\"":[246],"using":[247],"human-associated":[248],"habitat":[249],"demonstrate":[252],"performance":[254],"Meta-Mesh":[256,261],"Therefore,":[260],"would":[262],"system":[270],"quickly":[272],"parse":[273],"identify":[275]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}