{"id":"https://openalex.org/W2398424372","doi":null,"title":"Determining the most suitable multiple sequence alignment methodology by using a set of heterogeneous biological features.","display_name":"Determining the most suitable multiple sequence alignment methodology by using a set of heterogeneous biological features.","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2398424372","mag":"2398424372"},"language":"en","primary_location":{"id":"mag:2398424372","doi":null,"is_oa":false,"landing_page_url":"http://iwbbio.ugr.es/papers/iwbbio_052.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306514693","display_name":"IWBBIO","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"IWBBIO","raw_type":null},"volume":null,"type":"article","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047036875","display_name":"Francisco Manuel Ortu\u00f1o","orcid":"https://orcid.org/0000-0001-7424-1753","observed_orcids":["https://orcid.org/0000-0001-7424-1753"]},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francisco Ortu\u00f1o","raw_affiliation_strings":["university of Granada"],"raw_orcid":"https://orcid.org/0000-0001-7424-1753","affiliations":[{"raw_affiliation_string":"university of Granada","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058407177","display_name":"Olga Valenzuela","orcid":"https://orcid.org/0000-0001-6034-9392","observed_orcids":["https://orcid.org/0000-0001-6034-9392"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Olga Valenzuela","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6034-9392","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039951150","display_name":"H. Pomares","orcid":"https://orcid.org/0000-0002-8528-828X","observed_orcids":["https://orcid.org/0000-0002-8528-828X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Pomares","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5089029287","display_name":"Ignacio Rojas","orcid":"https://orcid.org/0000-0002-1033-5635","observed_orcids":["https://orcid.org/0000-0002-1033-5635"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ignacio Rojas","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1033-5635","affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1099,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.42866046,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":null,"issue":null,"first_page":"283","last_page":"288"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9463000297546387,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9463000297546387,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.037300001829862595,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.008899999782443047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"multiple sequence alignment","score":1.0},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"support vector machine","score":0.9160000085830688},{"id":"https://openalex.org/keywords/biological-characteristics","display_name":"biological characteristics","score":0.6489999890327454},{"id":"https://openalex.org/keywords/balibase","display_name":"BAliBASE","score":0.6039999723434448},{"id":"https://openalex.org/keywords/sequence-similarity","display_name":"sequence similarity","score":0.3319999873638153}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6949335932731628},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6937034130096436},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6698150634765625},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6565378308296204},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6216444969177246},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.6085056662559509},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5391941070556641},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5091220736503601},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4946398437023163},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.4943852424621582},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4891989231109619},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45724841952323914},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.43194007873535156},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.42570433020591736},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4067819118499756},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20378506183624268},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09035709500312805},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"mag:2398424372","doi":null,"is_oa":false,"landing_page_url":"http://iwbbio.ugr.es/papers/iwbbio_052.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306514693","display_name":"IWBBIO","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"IWBBIO","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1590240800","https://openalex.org/W2011289056","https://openalex.org/W2053238889","https://openalex.org/W2093931624","https://openalex.org/W2106882534","https://openalex.org/W2108491719","https://openalex.org/W2127122014","https://openalex.org/W2127774996","https://openalex.org/W2130479394","https://openalex.org/W2132926880","https://openalex.org/W2136570298","https://openalex.org/W2140872496","https://openalex.org/W2141885858","https://openalex.org/W2144362290","https://openalex.org/W2154053567","https://openalex.org/W2154139219","https://openalex.org/W2169602699"],"related_works":["https://openalex.org/W2768996653","https://openalex.org/W2181948338","https://openalex.org/W2150326938","https://openalex.org/W2025472073","https://openalex.org/W2746442665","https://openalex.org/W2066699566","https://openalex.org/W45137363","https://openalex.org/W2545720329","https://openalex.org/W2759945263","https://openalex.org/W2189341360"],"abstract_inverted_index":{"Multiple":[0],"sequence":[1],"alignments":[2,28],"(MSAs)":[3],"are":[4,34,69],"well-known":[5,116],"procedures":[6],"which":[7,95],"provide":[8,97],"useful":[9],"information":[10],"to":[11,59,88,120],"other":[12],"techniques":[13],"in":[14],"bioinformatics":[15],"such":[16],"as":[17],"biological":[18,41,112],"function":[19],"analyses,":[20],"structure":[21],"predictions":[22],"or":[23],"next-generation":[24],"sequencing.":[25],"Nevertheless,":[26],"the":[27,39,44,55,92,122,126,133],"provided":[29],"by":[30,132],"current":[31,48],"MSA":[32,93],"methodologies":[33],"quite":[35],"different":[36],"depending":[37],"on":[38,54,83],"particular":[40,104],"features":[42,113],"of":[43,64,106,110],"aligned":[45],"sequences.":[46,107],"Thus,":[47],"tools":[49],"do":[50],"not":[51],"totally":[52],"agree":[53],"most":[56],"suitable":[57],"way":[58],"align":[60],"a":[61,77,98,103],"specific":[62],"set":[63,105,109],"sequences,":[65],"overall":[66],"when":[67],"sequences":[68],"less":[70],"related.":[71],"In":[72],"this":[73],"work,":[74],"we":[75],"propose":[76],"novel":[78],"machine":[79],"learning":[80],"technique":[81],"based":[82],"support":[84],"vector":[85],"machines":[86],"(SVMs)":[87],"predict":[89],"\u201da":[90],"priori\u201d":[91],"tool":[94],"will":[96,129],"more":[99],"accurate":[100],"alignment":[101],"for":[102],"A":[108],"heterogeneous":[111],"retrieved":[114],"from":[115],"databases":[117],"is":[118],"applied":[119],"train":[121],"proposed":[123],"algorithm.":[124],"Finally,":[125],"SVM":[127],"approach":[128],"be":[130],"assessed":[131],"benchmark":[134],"BAliBASE":[135],"v3.0.":[136]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-09-22T06:50:58.402377","created_date":"2016-06-24T00:00:00"}