{"id":"https://openalex.org/W2397280718","doi":null,"title":"The genomic signatures of adaptive evolution in Populus","display_name":"The genomic signatures of adaptive evolution in Populus","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2397280718","mag":"2397280718"},"language":"en","primary_location":{"id":"pmh:oai:DiVA.org:umu-120286","doi":null,"is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-120286","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I86987016","host_organization_name":"KTH Royal Institute of Technology","host_organization_lineage":["https://openalex.org/I86987016"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-120286","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100743888","display_name":"Jing Wang","orcid":"https://orcid.org/0000-0002-7960-0396","observed_orcids":["https://orcid.org/0000-0002-7960-0396","https://orcid.org/0009-0000-5497-9777"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jing Wang","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-7960-0396","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5100743888"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.8403000235557556,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.8403000235557556,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.10159999877214432,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.028300000354647636,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/adaptive-evolution","display_name":"adaptive evolution","score":0.9620000123977661},{"id":"https://openalex.org/keywords/natural-selection","display_name":"natural selection","score":0.9509999752044678},{"id":"https://openalex.org/keywords/poplar","display_name":"poplar","score":0.6759999990463257},{"id":"https://openalex.org/keywords/populus-tremula","display_name":"Populus tremula","score":0.9470000267028809},{"id":"https://openalex.org/keywords/populus-tremuloides","display_name":"Populus tremuloides","score":1.0},{"id":"https://openalex.org/keywords/populus-trichocarpa","display_name":"Populus trichocarpa","score":1.0},{"id":"https://openalex.org/keywords/positive-selection","display_name":"positive selection","score":0.6980000138282776},{"id":"https://openalex.org/keywords/purifying-selection","display_name":"purifying selection","score":0.9990000128746033},{"id":"https://openalex.org/keywords/linked-selection","display_name":"linked selection","score":0.9300000071525574},{"id":"https://openalex.org/keywords/nucleotide-polymorphism","display_name":"nucleotide polymorphism","score":0.8349999785423279},{"id":"https://openalex.org/keywords/genomic-divergence","display_name":"genomic divergence","score":0.7509999871253967},{"id":"https://openalex.org/keywords/pleistocene","display_name":"Pleistocene","score":0.5979999899864197},{"id":"https://openalex.org/keywords/recombination","display_name":"recombination","score":0.48899999260902405},{"id":"https://openalex.org/keywords/effective-population-size","display_name":"effective population size","score":0.9639999866485596},{"id":"https://openalex.org/keywords/local-adaptation","display_name":"local adaptation","score":0.9190000295639038},{"id":"https://openalex.org/keywords/latitudinal-gradient","display_name":"latitudinal gradient","score":0.8980000019073486},{"id":"https://openalex.org/keywords/soft-sweeps","display_name":"soft sweeps","score":0.7269999980926514},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphisms","display_name":"single nucleotide polymorphisms","score":0.7590000033378601},{"id":"https://openalex.org/keywords/phylogenetic-comparative-analysis","display_name":"phylogenetic comparative analysis","score":0.6629999876022339}],"concepts":[{"id":"https://openalex.org/C2992278830","wikidata":"https://www.wikidata.org/wiki/Q483921","display_name":"Adaptive evolution","level":3,"score":0.5294777154922485},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4694461524486542},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.44108375906944275},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22861430048942566},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1452956199645996}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:DiVA.org:umu-120286","doi":null,"is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-120286","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I86987016","host_organization_name":"KTH Royal Institute of Technology","host_organization_lineage":["https://openalex.org/I86987016"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},{"id":"mag:2397280718","doi":null,"is_oa":false,"landing_page_url":"http://umu.diva-portal.org/smash/get/diva2:927986/FULLTEXT01","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:DiVA.org:umu-120286","doi":null,"is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-120286","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I86987016","host_organization_name":"KTH Royal Institute of Technology","host_organization_lineage":["https://openalex.org/I86987016"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":109,"referenced_works":["https://openalex.org/W1015400671","https://openalex.org/W1133966731","https://openalex.org/W1525285200","https://openalex.org/W1547248981","https://openalex.org/W1603890170","https://openalex.org/W1689369637","https://openalex.org/W1757110396","https://openalex.org/W1793793548","https://openalex.org/W1958633700","https://openalex.org/W1964224776","https://openalex.org/W1964227412","https://openalex.org/W1972673599","https://openalex.org/W1972691534","https://openalex.org/W1978025281","https://openalex.org/W1980087716","https://openalex.org/W1982603712","https://openalex.org/W1989923963","https://openalex.org/W1991805581","https://openalex.org/W1992881128","https://openalex.org/W1993351732","https://openalex.org/W2007325254","https://openalex.org/W2009132217","https://openalex.org/W2009804709","https://openalex.org/W2020836030","https://openalex.org/W2024896534","https://openalex.org/W2025253353","https://openalex.org/W2029353325","https://openalex.org/W2033401580","https://openalex.org/W2034869568","https://openalex.org/W2036507199","https://openalex.org/W2037412015","https://openalex.org/W2044961839","https://openalex.org/W2045391589","https://openalex.org/W2046256455","https://openalex.org/W2046630500","https://openalex.org/W2054078881","https://openalex.org/W2055543630","https://openalex.org/W2055966372","https://openalex.org/W2058586944","https://openalex.org/W2059184037","https://openalex.org/W2060435573","https://openalex.org/W2061661545","https://openalex.org/W2062772087","https://openalex.org/W2071537172","https://openalex.org/W2075923653","https://openalex.org/W2085535441","https://openalex.org/W2095680943","https://openalex.org/W2096419703","https://openalex.org/W2098615058","https://openalex.org/W2101341991","https://openalex.org/W2103184791","https://openalex.org/W2103906623","https://openalex.org/W2108169091","https://openalex.org/W2108234281","https://openalex.org/W2111681569","https://openalex.org/W2115833671","https://openalex.org/W2116111392","https://openalex.org/W2116193229","https://openalex.org/W2116640594","https://openalex.org/W2116668053","https://openalex.org/W2118020384","https://openalex.org/W2118055782","https://openalex.org/W2118526609","https://openalex.org/W2119444539","https://openalex.org/W2122135212","https://openalex.org/W2123700706","https://openalex.org/W2123707618","https://openalex.org/W2123720538","https://openalex.org/W2124960286","https://openalex.org/W2125346198","https://openalex.org/W2126204254","https://openalex.org/W2126285319","https://openalex.org/W2126334905","https://openalex.org/W2127508823","https://openalex.org/W2129034036","https://openalex.org/W2130095644","https://openalex.org/W2131016694","https://openalex.org/W2131455728","https://openalex.org/W2132455295","https://openalex.org/W2132793635","https://openalex.org/W2135370544","https://openalex.org/W2135372971","https://openalex.org/W2136996164","https://openalex.org/W2140784970","https://openalex.org/W2142464651","https://openalex.org/W2142504849","https://openalex.org/W2143606043","https://openalex.org/W2144368480","https://openalex.org/W2146728635","https://openalex.org/W2149687548","https://openalex.org/W2155670634","https://openalex.org/W2156866331","https://openalex.org/W2157149092","https://openalex.org/W2159038577","https://openalex.org/W2159580843","https://openalex.org/W2159674456","https://openalex.org/W2161233989","https://openalex.org/W2161499761","https://openalex.org/W2163031152","https://openalex.org/W2167067208","https://openalex.org/W2168129076","https://openalex.org/W2168133698","https://openalex.org/W2168158754","https://openalex.org/W2169212046","https://openalex.org/W2171664065","https://openalex.org/W2173518071","https://openalex.org/W2298133359","https://openalex.org/W2313987196","https://openalex.org/W4241443362"],"related_works":["https://openalex.org/W2305194520","https://openalex.org/W4416854671","https://openalex.org/W67445499","https://openalex.org/W3044096064","https://openalex.org/W2898997100","https://openalex.org/W3008332727","https://openalex.org/W2111681569","https://openalex.org/W3185484061","https://openalex.org/W2203111606","https://openalex.org/W3131207988"],"abstract_inverted_index":{"Understanding":[0],"the":[1,39,105,121,142,152,155,160,167,177,198,205,228,300],"genetic":[2,296],"basis":[3,230],"of":[4,14,25,42,66,83,101,110,123,154,162,179,202,231,248,274,333],"adaptive":[5,224,291],"evolution,":[6],"and":[7,16,19,57,76,99,108,135,159,182,189,219,303],"how":[8,325],"natural":[9,43,70],"selection":[10,44,112,188,275],"has":[11,79],"shaped":[12,81,330],"patterns":[13,82,126,332],"polymorphism":[15,85],"divergence":[17,125],"within":[18],"between":[20,127,204],"species":[21,144],"are":[22,261,279],"enduring":[23],"goals":[24],"evolutionary":[26,47,327],"genetics.":[27],"In":[28,315],"this":[29,277,317],"thesis,":[30],"I":[31],"used":[32],"whole":[33],"genome":[34],"re-sequencing":[35],"data":[36,214],"to":[37,73,226,308,323],"characterize":[38,120],"genomic":[40,124,180,200,229,267],"signatures":[41,109,273],"along":[45,237],"different":[46,172,305,312],"timescales":[48],"in":[49,90,95,186,196,222,234,258,264,311,336],"three":[50,92],"Populus":[51,53],"species:":[52,132],"tremula,":[54],"P.":[55,58,133,136,235],"tremuloides":[56],"trichocarpa.":[59],"First,":[60],"our":[61],"study":[62],"shows":[63],"multiple":[64,290],"lines":[65],"evidence":[67],"suggesting":[68],"that":[69,113,141,174,184,245],"selection,":[71,78],"due":[72],"both":[74],"positive":[75],"purifying":[77],"widely":[80],"nucleotide":[84,250],"at":[86,276],"linked":[87,111,187],"neutral":[88],"sites":[89],"all":[91],"species.":[93,117,208],"Differences":[94],"effective":[96],"population":[97],"sizes":[98],"rates":[100],"recombination":[102,190],"largely":[103],"explain":[104,176],"disparate":[106],"magnitudes":[107],"we":[114,119,210],"observe":[115],"among":[116],"Second,":[118],"evolution":[122,335],"two":[128,143,206],"recently":[129],"diverged":[130,145],"aspen":[131,207],"tremula":[134,236],"tremuloides.":[137],"Our":[138],"findings":[139],"indicate":[140],"~2.2-3.1":[146],"million":[147],"years":[148],"ago,":[149],"coinciding":[150],"with":[151,215,282],"severing":[153],"Bering":[156],"land":[157],"bridge":[158],"onset":[161],"dramatic":[163],"climatic":[164],"oscillations":[165],"during":[166],"Pleistocene.":[168],"We":[169,243],"further":[170],"explore":[171],"mechanisms":[173],"may":[175],"heterogeneity":[178],"divergence,":[181],"find":[183,244],"variation":[185,221,297],"likely":[191],"plays":[192],"a":[193,238,246,265],"key":[194],"role":[195],"generating":[197],"heterogeneous":[199],"landscape":[201],"differentiation":[203],"Third,":[209],"link":[211],"whole-genome":[212],"polymorphic":[213],"local":[216,232,259],"environmental":[217],"variables":[218],"phenotypic":[220],"an":[223],"trait":[225],"investigate":[227],"adaptation":[233,260],"latitudinal":[239,313],"gradient":[240],"across":[241],"Sweden.":[242],"majority":[247],"single":[249,266],"polymorphisms":[251],"(SNPs)":[252],"(>90%)":[253],"identified":[254],"as":[255],"being":[256],"involved":[257],"tightly":[262],"clustered":[263],"region":[268,278],"on":[269],"chromosome":[270],"10.":[271],"The":[272],"more":[280],"consistent":[281],"soft":[283],"rather":[284],"than":[285],"hard":[286],"selective":[287],"sweeps,":[288],"where":[289,304],"haplotypes":[292,306],"derived":[293],"from":[294],"standing":[295],"sweep":[298],"through":[299],"populations":[301],"simultaneously,":[302],"rise":[307],"high":[309],"frequency":[310],"regions.":[314],"summary,":[316],"thesis":[318],"uses":[319],"phylogenetic":[320],"comparative":[321],"approaches":[322],"elucidate":[324],"various":[326],"forces":[328],"have":[329],"genome-wide":[331],"sequence":[334],"Populus.":[337]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}