{"id":"https://openalex.org/W2392741655","doi":null,"title":"Sequences Alignment Algorithm with Memory Constraints","display_name":"Sequences Alignment Algorithm with Memory Constraints","publication_year":2002,"publication_date":"2002-01-01","ids":{"openalex":"https://openalex.org/W2392741655","mag":"2392741655"},"language":"en","primary_location":{"id":"mag:2392741655","doi":null,"is_oa":false,"landing_page_url":"http://en.cnki.com.cn/Article_en/CJFDTOTAL-WXYJ200206000.htm","pdf_url":null,"source":{"id":"https://openalex.org/S2764700129","display_name":"Microelectronics & Computer","issn_l":"1000-7180","issn":["1000-7180"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":"https://openalex.org/P4322697011","host_organization_name":"IEEE","host_organization_lineage":["https://openalex.org/P4322697011"],"host_organization_lineage_names":["IEEE"],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"Microelectronics & Computer","raw_type":null},"volume":null,"type":"article","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100415193","display_name":"Zhijian Li","orcid":"https://orcid.org/0000-0002-1523-1333","observed_orcids":["https://orcid.org/0000-0002-1523-1333","https://orcid.org/0000-0002-2308-7060"]},"institutions":[{"id":"https://openalex.org/I115194318","display_name":"NSF NCAR High Altitude Observatory","ror":"https://ror.org/03773p874","country_code":"US","type":"facility","lineage":["https://openalex.org/I107766831","https://openalex.org/I115194318","https://openalex.org/I1311060795","https://openalex.org/I2799356940","https://openalex.org/I4210141337","https://openalex.org/I4210150888"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhijian Li","raw_affiliation_strings":["HAO, YANG Qi, ZHU Ming  fa"],"raw_orcid":"https://orcid.org/0000-0002-1523-1333","affiliations":[{"raw_affiliation_string":"HAO, YANG Qi, ZHU Ming  fa","institution_ids":["https://openalex.org/I115194318"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100415193"],"corresponding_institution_ids":["https://openalex.org/I115194318"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.01209999993443489,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.0024999999441206455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"sequence alignment","score":0.9980000257492065},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"dynamic programming","score":0.7490000128746033},{"id":"https://openalex.org/keywords/memory-reduction","display_name":"memory reduction","score":0.6890000104904175},{"id":"https://openalex.org/keywords/space-time-tradeoff","display_name":"space-time tradeoff","score":0.7850000262260437},{"id":"https://openalex.org/keywords/memory-limitations","display_name":"memory constraints","score":0.46799999475479126},{"id":"https://openalex.org/keywords/bioinformatics-algorithms","display_name":"bioinformatics algorithms","score":0.6710000038146973}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.867795467376709},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.8327775001525879},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.735623836517334},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.699406623840332},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4803937077522278},{"id":"https://openalex.org/C75930677","wikidata":"https://www.wikidata.org/wiki/Q1251950","display_name":"Ramer\u2013Douglas\u2013Peucker algorithm","level":3,"score":0.4112671911716461},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.24591436982154846},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"mag:2392741655","doi":null,"is_oa":false,"landing_page_url":"http://en.cnki.com.cn/Article_en/CJFDTOTAL-WXYJ200206000.htm","pdf_url":null,"source":{"id":"https://openalex.org/S2764700129","display_name":"Microelectronics & Computer","issn_l":"1000-7180","issn":["1000-7180"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":"https://openalex.org/P4322697011","host_organization_name":"IEEE","host_organization_lineage":["https://openalex.org/P4322697011"],"host_organization_lineage_names":["IEEE"],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"Microelectronics & Computer","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2014145971","https://openalex.org/W7095172246","https://openalex.org/W4225095220","https://openalex.org/W2108317509","https://openalex.org/W2084136254","https://openalex.org/W2367862442","https://openalex.org/W2102659807","https://openalex.org/W67008405","https://openalex.org/W7095739231","https://openalex.org/W2157289521"],"abstract_inverted_index":{"Sequence":[0],"alignment":[1,17],"is":[2,19,41,76],"one":[3],"of":[4,38,61,89],"the":[5,42,47,59,78,86,95],"most":[6],"important":[7],"algorithm":[8,13,45,69,81,92],"in":[9],"bioinformatics.":[10],"The":[11,23],"first":[12],"that":[14],"result":[15],"sequence":[16],"problem":[18],"dynamic":[20,24,39,54,79],"programming":[21,25,40,55,80],"algorithm.":[22,84],"algorithm's":[26],"spatial":[27,36,48,72],"and":[28,73,82,101],"temporal":[29,74],"requirement":[30,37,49,75],"all":[31],"are.":[32],"In":[33],"real":[34],"application,the":[35],"bottleneck.":[43],"Hirschberg":[44,83],"reduce":[46],"from":[50],"to":[51],"comparing":[52],"with":[53],"algorithm,":[56],"but":[57],"doubles":[58],"cost":[60],"computing":[62,102],"time.":[63,103],"This":[64],"paper":[65],"introduce":[66],"a":[67],"new":[68],"Fast":[70],"Alignment(FA),its":[71],"between":[77,98],"Tuning":[85],"argument":[87],"k":[88],"FA":[90],"algorithm,the":[91],"can":[93],"get":[94],"best":[96],"tradeoff":[97],"available":[99],"memory":[100]},"counts_by_year":[],"updated_date":"2026-11-05T12:25:35.769452","created_date":"2016-06-24T00:00:00"}