{"id":"https://openalex.org/W2381490973","doi":"https://doi.org/10.3724/sp.j.1005.2008.00620","title":"Computational identification of transcriptional regulatory elements in Arabidopsis TCH4 promoter","display_name":"Computational identification of transcriptional regulatory elements in Arabidopsis TCH4 promoter","publication_year":2008,"publication_date":"2008-05-10","ids":{"openalex":"https://openalex.org/W2381490973","doi":"https://doi.org/10.3724/sp.j.1005.2008.00620","mag":"2381490973","pmid":"https://pubmed.ncbi.nlm.nih.gov/18487153"},"language":"zh","primary_location":{"id":"doi:10.3724/sp.j.1005.2008.00620","doi":"https://doi.org/10.3724/sp.j.1005.2008.00620","is_oa":true,"landing_page_url":"https://doi.org/10.3724/sp.j.1005.2008.00620","pdf_url":"http://www.chinagene.cn/CN/article/downloadArticleFile.do?attachType=PDF&id=1753","source":{"id":"https://openalex.org/S4210235564","display_name":"Hereditas (Beijing)","issn_l":"0253-9772","issn":["0253-9772"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","medline","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4310319982","host_organization_name":"Science Press","host_organization_lineage":["https://openalex.org/P4310319982"],"host_organization_lineage_names":["Science Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hereditas (Beijing)","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"http://www.chinagene.cn/CN/article/downloadArticleFile.do?attachType=PDF&id=1753","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090143357","display_name":"Chang-Qing ZHANG","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4391768045","display_name":"State Key Laboratory of Pharmaceutical Biotechnology","ror":"https://ror.org/043ea4m21","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4391768045","https://openalex.org/I881766915"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chang-Qing ZHANG","raw_affiliation_strings":["State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing 210093, China. zhang_chq2002@sohu.com",". State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing 210093, China;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing 210093, China. zhang_chq2002@sohu.com","institution_ids":["https://openalex.org/I4391768045","https://openalex.org/I881766915"]},{"raw_affiliation_string":". State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing 210093, China;","institution_ids":["https://openalex.org/I4391768045","https://openalex.org/I881766915"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5090143357"],"corresponding_institution_ids":["https://openalex.org/I4391768045","https://openalex.org/I881766915"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":95},"biblio":{"volume":"30","issue":"5","first_page":"620","last_page":"626"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9473000168800354,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9473000168800354,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.03449999913573265,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.0027000000700354576,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.8669999837875366},{"id":"https://openalex.org/keywords/promoter-cis-acting-elements","display_name":"promoter cis-acting elements","score":0.8149999976158142},{"id":"https://openalex.org/keywords/transcriptional-regulation","display_name":"transcriptional regulation","score":0.9729999899864197},{"id":"https://openalex.org/keywords/secondary-growth","display_name":"secondary growth","score":0.5339999794960022},{"id":"https://openalex.org/keywords/pathogen-resistance","display_name":"pathogen resistance","score":0.7639999985694885},{"id":"https://openalex.org/keywords/environmental-stress-response","display_name":"environmental stress response","score":0.828000009059906},{"id":"https://openalex.org/keywords/hormone-regulation","display_name":"hormonal regulation","score":0.6010000109672546},{"id":"https://openalex.org/keywords/mechanical-stimuli","display_name":"mechanical stimuli","score":0.7289999723434448},{"id":"https://openalex.org/keywords/co-expressed-genes","display_name":"co-expressed genes","score":0.7129999995231628}],"concepts":[{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.8269696235656738},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.8135057687759399},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6820761561393738},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6274515390396118},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5560061931610107},{"id":"https://openalex.org/C27153228","wikidata":"https://www.wikidata.org/wiki/Q3787274","display_name":"Transcriptional regulation","level":4,"score":0.5142390131950378},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.48867395520210266},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4794986844062805},{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.47569334506988525},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.440228134393692},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.24092978239059448},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.20439741015434265},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.1753598153591156},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.058879584074020386}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016695","descriptor_name":"Glycosyltransferases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3724/sp.j.1005.2008.00620","doi":"https://doi.org/10.3724/sp.j.1005.2008.00620","is_oa":true,"landing_page_url":"https://doi.org/10.3724/sp.j.1005.2008.00620","pdf_url":"http://www.chinagene.cn/CN/article/downloadArticleFile.do?attachType=PDF&id=1753","source":{"id":"https://openalex.org/S4210235564","display_name":"Hereditas (Beijing)","issn_l":"0253-9772","issn":["0253-9772"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","medline","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4310319982","host_organization_name":"Science Press","host_organization_lineage":["https://openalex.org/P4310319982"],"host_organization_lineage_names":["Science Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hereditas (Beijing)","raw_type":"journal-article"},{"id":"pmid:18487153","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18487153","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Yi chuan = Hereditas","raw_type":"English Abstract"}],"best_oa_location":{"id":"doi:10.3724/sp.j.1005.2008.00620","doi":"https://doi.org/10.3724/sp.j.1005.2008.00620","is_oa":true,"landing_page_url":"https://doi.org/10.3724/sp.j.1005.2008.00620","pdf_url":"http://www.chinagene.cn/CN/article/downloadArticleFile.do?attachType=PDF&id=1753","source":{"id":"https://openalex.org/S4210235564","display_name":"Hereditas (Beijing)","issn_l":"0253-9772","issn":["0253-9772"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","medline","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4310319982","host_organization_name":"Science Press","host_organization_lineage":["https://openalex.org/P4310319982"],"host_organization_lineage_names":["Science Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hereditas (Beijing)","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1828425977","display_name":null,"funder_award_id":"973 Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6637634347","display_name":null,"funder_award_id":"2003CB715905","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2381490973.pdf","grobid_xml":"https://content.openalex.org/works/W2381490973.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1964132322","https://openalex.org/W2000004737","https://openalex.org/W2063212680","https://openalex.org/W2075526088","https://openalex.org/W2105267816","https://openalex.org/W2114459488","https://openalex.org/W2127347020","https://openalex.org/W2129418583","https://openalex.org/W2131621063","https://openalex.org/W2142748378","https://openalex.org/W2147944781","https://openalex.org/W2154412571","https://openalex.org/W2160840687","https://openalex.org/W2161012477","https://openalex.org/W2161061374","https://openalex.org/W2165997604","https://openalex.org/W2166491951","https://openalex.org/W2169542029","https://openalex.org/W3131503180"],"related_works":["https://openalex.org/W2524535157","https://openalex.org/W1929471671","https://openalex.org/W7008754575","https://openalex.org/W2801083178","https://openalex.org/W2626861131","https://openalex.org/W70832858","https://openalex.org/W1966855142","https://openalex.org/W4392531738","https://openalex.org/W2117281351","https://openalex.org/W2143799398"],"abstract_inverted_index":{"Arabidopsis":[0],"TCH4":[1,42,112],"gene":[2,81,113],"plays":[3],"an":[4],"important":[5],"role":[6],"in":[7,61,114],"the":[8,66,70,84,97,105],"biological":[9],"processes":[10],"related":[11],"to":[12,17,21,116],"plant":[13],"secondary":[14],"growth,":[15],"resistance":[16],"pathogen,":[18],"and":[19,31,55,83,90,96,119],"adaptation":[20],"environmental":[22,120],"stresses.":[23],"It":[24],"is":[25,87],"up-regulated":[26],"by":[27,44],"various":[28],"hormonal,":[29,117],"environmental,":[30],"mechanical":[32],"stimuli.":[33,121],"Here,":[34],"we":[35],"identified":[36,60,67],"9":[37],"transcriptional":[38,106],"regulatory":[39],"elements":[40,50,57,68],"from":[41],"promoter":[43],"bioinformatics":[45],"approach.":[46],"In":[47],"which,":[48],"4":[49],"have":[51],"been":[52],"reported":[53],"previously,":[54],"5":[56],"are":[58],"newly":[59],"this":[62],"study.":[63],"All":[64],"of":[65,72,99],"contain":[69],"sequences":[71],"known":[73,100],"cis-elements.":[74],"Especially,":[75],"their":[76],"distribution":[77],"along":[78],"some":[79],"co-expressed":[80],"promoters":[82,86],"orthologous":[85],"typically":[88],"clustered":[89],"syntenic.":[91],"Based":[92],"on":[93],"our":[94],"predictions":[95],"information":[98],"cis-elements,":[101],"a":[102],"model":[103],"representing":[104],"regulation":[107],"mechanism":[108],"was":[109],"proposed":[110],"for":[111],"response":[115],"mechanical,":[118]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-11-02T09:45:03.842371","created_date":"2016-06-24T00:00:00"}
