{"id":"https://openalex.org/W2333512994","doi":"https://doi.org/10.1139/gen-2014-0044","title":"Identification and validation of functional markers in a global rice collection by association mapping","display_name":"Identification and validation of functional markers in a global rice collection by association mapping","publication_year":2014,"publication_date":"2014-06-01","ids":{"openalex":"https://openalex.org/W2333512994","doi":"https://doi.org/10.1139/gen-2014-0044","mag":"2333512994","pmid":"https://pubmed.ncbi.nlm.nih.gov/25243661"},"language":"en","primary_location":{"id":"doi:10.1139/gen-2014-0044","doi":"https://doi.org/10.1139/gen-2014-0044","is_oa":false,"landing_page_url":"https://doi.org/10.1139/gen-2014-0044","pdf_url":null,"source":{"id":"https://openalex.org/S170991295","display_name":"Genome","issn_l":"0831-2796","issn":["0831-2796","1480-3321"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310312929","host_organization_name":"Canadian Science Publishing","host_organization_lineage":["https://openalex.org/P4310312929"],"host_organization_lineage_names":["Canadian Science Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024928220","display_name":"Mojtaba Jahani","orcid":"https://orcid.org/0000-0003-1844-1464","observed_orcids":["https://orcid.org/0000-0003-1844-1464"]},"institutions":[{"id":"https://openalex.org/I115566878","display_name":"Shahid Bahonar University of Kerman","ror":"https://ror.org/04zn42r77","country_code":"IR","type":"education","lineage":["https://openalex.org/I115566878"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mojtaba Jahani","raw_affiliation_strings":["Department of Agronomy and Plant Breeding, Faculty of Agriculture, Shahid Bahonar University of Kerman, P.O. Box 76169-133, Kerman, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agronomy and Plant Breeding, Faculty of Agriculture, Shahid Bahonar University of Kerman, P.O. Box 76169-133, Kerman, Iran","institution_ids":["https://openalex.org/I115566878"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068585844","display_name":"Ghorbanali Nematzadeh","orcid":"https://orcid.org/0000-0002-1371-0293","observed_orcids":["https://orcid.org/0000-0002-1371-0293"]},"institutions":[{"id":"https://openalex.org/I184896493","display_name":"Sari Agricultural Sciences and Natural Resources University","ror":"https://ror.org/0284vkq26","country_code":"IR","type":"education","lineage":["https://openalex.org/I184896493"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Ghorbanali Nematzadeh","raw_affiliation_strings":["Genetics and Agricultural Biotechnology Institute of Tabarestan, Sari Agricultural Sciences and Natural Resources University, P.O. Box 578, Sari, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetics and Agricultural Biotechnology Institute of Tabarestan, Sari Agricultural Sciences and Natural Resources University, P.O. Box 578, Sari, Iran","institution_ids":["https://openalex.org/I184896493"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001809157","display_name":"Behnaz Dolatabadi","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I184896493","display_name":"Sari Agricultural Sciences and Natural Resources University","ror":"https://ror.org/0284vkq26","country_code":"IR","type":"education","lineage":["https://openalex.org/I184896493"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Behnaz Dolatabadi","raw_affiliation_strings":["Department of Biotechnology and Plant Breeding, College of Agronomy Sciences, Sari Agricultural Sciences and Natural Resources University, P.O. Box 578, Mazandaran, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Plant Breeding, College of Agronomy Sciences, Sari Agricultural Sciences and Natural Resources University, P.O. Box 578, Mazandaran, Iran","institution_ids":["https://openalex.org/I184896493"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102011496","display_name":"Seyyed Hamidreza Hashemipetroudi","orcid":"https://orcid.org/0000-0002-0870-1691","observed_orcids":["https://orcid.org/0000-0002-0870-1691"]},"institutions":[{"id":"https://openalex.org/I184896493","display_name":"Sari Agricultural Sciences and Natural Resources University","ror":"https://ror.org/0284vkq26","country_code":"IR","type":"education","lineage":["https://openalex.org/I184896493"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Sayyed Hamidreza Hashemi","raw_affiliation_strings":["Genetics and Agricultural Biotechnology Institute of Tabarestan, Sari Agricultural Sciences and Natural Resources University, P.O. Box 578, Sari, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetics and Agricultural Biotechnology Institute of Tabarestan, Sari Agricultural Sciences and Natural Resources University, P.O. Box 578, Sari, Iran","institution_ids":["https://openalex.org/I184896493"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037003165","display_name":"Ghasem Mohammadi\u2010Nejad","orcid":"https://orcid.org/0000-0002-5767-9734","observed_orcids":["https://orcid.org/0000-0002-5767-9734"]},"institutions":[{"id":"https://openalex.org/I115566878","display_name":"Shahid Bahonar University of Kerman","ror":"https://ror.org/04zn42r77","country_code":"IR","type":"education","lineage":["https://openalex.org/I115566878"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Ghasem Mohammadi-Nejad","raw_affiliation_strings":["Department of Agronomy and Plant Breeding, Faculty of Agriculture, Shahid Bahonar University of Kerman, P.O. Box 76169-133, Kerman, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agronomy and Plant Breeding, Faculty of Agriculture, Shahid Bahonar University of Kerman, P.O. Box 76169-133, Kerman, Iran","institution_ids":["https://openalex.org/I115566878"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4814,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.60185009,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":"57","issue":"6","first_page":"355","last_page":"362"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12045","display_name":"Rice Cultivation and Yield Improvement","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rice","display_name":"rice","score":0.9980000257492065},{"id":"https://openalex.org/keywords/marker-assisted-selection","display_name":"marker-assisted selection","score":0.7929999828338623},{"id":"https://openalex.org/keywords/association-mapping","display_name":"association mapping","score":0.7070000171661377},{"id":"https://openalex.org/keywords/functional-biomarkers","display_name":"functional markers","score":0.5740000009536743},{"id":"https://openalex.org/keywords/morphological-characters","display_name":"morphological characters","score":0.8999999761581421},{"id":"https://openalex.org/keywords/grain-shape","display_name":"grain shape","score":0.6370000243186951},{"id":"https://openalex.org/keywords/population-structure","display_name":"population structure","score":0.8659999966621399},{"id":"https://openalex.org/keywords/kinship","display_name":"kinship","score":0.6340000033378601},{"id":"https://openalex.org/keywords/linear-mixed-models","display_name":"linear mixed models","score":0.7139999866485596},{"id":"https://openalex.org/keywords/false-discovery-rate","display_name":"false discovery rate","score":0.7689999938011169},{"id":"https://openalex.org/keywords/snp-markers","display_name":"SNP markers","score":0.5960000157356262},{"id":"https://openalex.org/keywords/microsatellite-markers","display_name":"microsatellite markers","score":0.6480000019073486},{"id":"https://openalex.org/keywords/sts-markers","display_name":"STS markers","score":0.7960000038146973},{"id":"https://openalex.org/keywords/caps-markers","display_name":"CAPS markers","score":0.7229999899864197},{"id":"https://openalex.org/keywords/indel-markers","display_name":"InDel markers","score":0.9259999990463257}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8625556230545044},{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.7329415678977966},{"id":"https://openalex.org/C134443026","wikidata":"https://www.wikidata.org/wiki/Q4809584","display_name":"Association mapping","level":5,"score":0.7273901700973511},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.631641149520874},{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.6047103404998779},{"id":"https://openalex.org/C2779227213","wikidata":"https://www.wikidata.org/wiki/Q3954823","display_name":"Marker-assisted selection","level":4,"score":0.591515839099884},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5399970412254333},{"id":"https://openalex.org/C190789776","wikidata":"https://www.wikidata.org/wiki/Q767511","display_name":"Genetic marker","level":3,"score":0.5350146889686584},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5043302774429321},{"id":"https://openalex.org/C2777160741","wikidata":"https://www.wikidata.org/wiki/Q2311855","display_name":"Molecular marker","level":3,"score":0.47910359501838684},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4636100232601166},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.45783260464668274},{"id":"https://openalex.org/C103545067","wikidata":"https://www.wikidata.org/wiki/Q796265","display_name":"Best linear unbiased prediction","level":3,"score":0.4311474561691284},{"id":"https://openalex.org/C155015343","wikidata":"https://www.wikidata.org/wiki/Q788558","display_name":"Plant breeding","level":2,"score":0.4236065745353699},{"id":"https://openalex.org/C106934330","wikidata":"https://www.wikidata.org/wiki/Q1971873","display_name":"Trait","level":2,"score":0.4220184087753296},{"id":"https://openalex.org/C61320498","wikidata":"https://www.wikidata.org/wiki/Q265193","display_name":"Microsatellite","level":4,"score":0.41232818365097046},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.32409292459487915},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.19984868168830872},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.18220117688179016},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.15104761719703674},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11266443133354187},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000704","descriptor_name":"Analysis of Variance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1139/gen-2014-0044","doi":"https://doi.org/10.1139/gen-2014-0044","is_oa":false,"landing_page_url":"https://doi.org/10.1139/gen-2014-0044","pdf_url":null,"source":{"id":"https://openalex.org/S170991295","display_name":"Genome","issn_l":"0831-2796","issn":["0831-2796","1480-3321"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310312929","host_organization_name":"Canadian Science Publishing","host_organization_lineage":["https://openalex.org/P4310312929"],"host_organization_lineage_names":["Canadian Science Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome","raw_type":"journal-article"},{"id":"pmid:25243661","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25243661","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.991100013256073}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334389","display_name":"Genetics and Agricultural Biotechnology Institute of Tabarestan, Sari Agricultural Sciences and Natural Resources University","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W1596515083","https://openalex.org/W1631775100","https://openalex.org/W1803375514","https://openalex.org/W1974186799","https://openalex.org/W1981825566","https://openalex.org/W1991189546","https://openalex.org/W1997302775","https://openalex.org/W2004444667","https://openalex.org/W2006807779","https://openalex.org/W2023240307","https://openalex.org/W2027438451","https://openalex.org/W2035839217","https://openalex.org/W2037055899","https://openalex.org/W2040628583","https://openalex.org/W2042103448","https://openalex.org/W2043424508","https://openalex.org/W2051097685","https://openalex.org/W2051311491","https://openalex.org/W2060676385","https://openalex.org/W2065752169","https://openalex.org/W2070710916","https://openalex.org/W2076243827","https://openalex.org/W2086399523","https://openalex.org/W2093596583","https://openalex.org/W2094465224","https://openalex.org/W2098126593","https://openalex.org/W2102934288","https://openalex.org/W2104905104","https://openalex.org/W2105381419","https://openalex.org/W2107125983","https://openalex.org/W2116329478","https://openalex.org/W2116417303","https://openalex.org/W2127367029","https://openalex.org/W2127396309","https://openalex.org/W2130870140","https://openalex.org/W2131354461","https://openalex.org/W2132563424","https://openalex.org/W2134036574","https://openalex.org/W2134070988","https://openalex.org/W2141616651","https://openalex.org/W2143153648","https://openalex.org/W2145083705","https://openalex.org/W2147464346","https://openalex.org/W2149499248","https://openalex.org/W2150448009","https://openalex.org/W2155237631","https://openalex.org/W2155244871","https://openalex.org/W2158489424","https://openalex.org/W2161339576","https://openalex.org/W2168771710","https://openalex.org/W2172194725","https://openalex.org/W2380123443"],"related_works":["https://openalex.org/W2116417303","https://openalex.org/W4317739612","https://openalex.org/W2467183916","https://openalex.org/W1974186799","https://openalex.org/W2117816902","https://openalex.org/W6957949201","https://openalex.org/W4300002634","https://openalex.org/W2079657890","https://openalex.org/W2166554767","https://openalex.org/W7096237512"],"abstract_inverted_index":{"Recent":[0],"results":[1],"indicate":[2],"that":[3,170],"marker-assisted":[4,183],"selection":[5,22],"is":[6],"an":[7],"effective":[8],"approach":[9],"to":[10,15,30,37,117],"reduce":[11],"the":[12,17,88,97,110,119,138,141,186],"cost":[13],"and":[14,19,32,56,59,105,154],"improve":[16],"efficacy":[18],"accuracy":[20],"of":[21,67,124,189,199],"in":[23,63],"plant":[24],"breeding.":[25],"This":[26],"study":[27],"was":[28,46,93,115,144,161],"conducted":[29],"identify":[31],"validate":[33],"molecular":[34,50],"markers":[35,51,132,173],"linked":[36],"important":[38,165],"breeding":[39,180],"traits":[40,62,166],"by":[41,101],"association":[42,45,197],"mapping.":[43],"The":[44,73],"evaluated":[47],"between":[48,87],"81":[49],"(STS,":[52],"SSR,":[53],"Indel,":[54],"CAPS,":[55],"PCR-based":[57],"SNP)":[58],"15":[60],"morphological":[61,200],"a":[64,193],"global":[65],"panel":[66],"100":[68],"rice":[69,89,179,190],"(Oryza":[70],"sativa)":[71],"accessions.":[72,90],"population":[74,103],"structure":[75,104],"analysis":[76,92],"identified":[77],"three":[78],"main":[79],"subpopulations.":[80],"Obvious":[81],"kinship":[82],"relationships":[83],"were":[84,128],"also":[85],"detected":[86],"Association":[91],"performed":[94],"based":[95],"on":[96],"mixed":[98],"linear":[99],"model":[100],"considering":[102],"family":[106],"relatedness.":[107],"In":[108,157],"addition,":[109,158],"false":[111],"discovery":[112],"rate":[113],"method":[114],"used":[116],"correct":[118],"multiple":[120],"testing.":[121],"A":[122],"total":[123],"47":[125],"marker-trait":[126],"associations":[127],"identified,":[129],"including":[130],"22":[131],"for":[133,163,178,196],"14":[134],"traits.":[135,201],"Among":[136],"all,":[137],"polymorphism":[139],"at":[140],"loci":[142],"DDR-GL":[143],"highly":[145],"associated":[146],"with":[147],"grain":[148,152],"characters":[149],"(grain":[150],"length,":[151],"width,":[153],"length/width":[155],"ratio).":[156],"marker":[159],"RM3148":[160],"responsible":[162],"five":[164],"simultaneously.":[167],"Results":[168],"demonstrated":[169],"such":[171],"informative":[172],"can":[174],"be":[175],"very":[176],"useful":[177],"programs":[181],"using":[182],"selection.":[184],"Moreover,":[185],"diverse":[187],"populations":[188],"accessions":[191],"are":[192],"valuable":[194],"resource":[195],"mapping":[198]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":3}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
