{"id":"https://openalex.org/W2332237794","doi":"https://doi.org/10.1186/s40793-016-0143-0","title":"Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment","display_name":"Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment","publication_year":2016,"publication_date":"2016-03-12","ids":{"openalex":"https://openalex.org/W2332237794","doi":"https://doi.org/10.1186/s40793-016-0143-0","mag":"2332237794","pmid":"https://pubmed.ncbi.nlm.nih.gov/27042262","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4818494"},"language":"en","primary_location":{"id":"doi:10.1186/s40793-016-0143-0","doi":"https://doi.org/10.1186/s40793-016-0143-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40793-016-0143-0","pdf_url":"https://environmentalmicrobiome.biomedcentral.com/track/pdf/10.1186/s40793-016-0143-0","source":{"id":"https://openalex.org/S174963459","display_name":"Standards in Genomic Sciences","issn_l":"1944-3277","issn":["1944-3277"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","poland-70"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Standards in Genomic Sciences","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://environmentalmicrobiome.biomedcentral.com/track/pdf/10.1186/s40793-016-0143-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055631819","display_name":"Saranya Kanukollu","orcid":"https://orcid.org/0000-0003-0614-3566","observed_orcids":["https://orcid.org/0000-0003-0614-3566"]},"institutions":[{"id":"https://openalex.org/I4405252970","display_name":"Institute for Chemistry and Biology of the Marine Environment","ror":"https://ror.org/0060pja03","country_code":"DE","type":"education","lineage":["https://openalex.org/I129877168","https://openalex.org/I4405252970"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Saranya Kanukollu","raw_affiliation_strings":["Institute for Chemistry and Biology of the Marine Environment (ICBM), Oldenburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Chemistry and Biology of the Marine Environment (ICBM), Oldenburg, Germany","institution_ids":["https://openalex.org/I4405252970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070553086","display_name":"Sonja Voget","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sonja Voget","raw_affiliation_strings":["Department of Genomic and Applied Microbiology and G\u00f6ttingen Genomics Laboratory, Institute of Microbiology and Genetics, University of G\u00f6ttingen, G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genomic and Applied Microbiology and G\u00f6ttingen Genomics Laboratory, Institute of Microbiology and Genetics, University of G\u00f6ttingen, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054400975","display_name":"Marion Pohlner","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405252970","display_name":"Institute for Chemistry and Biology of the Marine Environment","ror":"https://ror.org/0060pja03","country_code":"DE","type":"education","lineage":["https://openalex.org/I129877168","https://openalex.org/I4405252970"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marion Pohlner","raw_affiliation_strings":["Institute for Chemistry and Biology of the Marine Environment (ICBM), Oldenburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Chemistry and Biology of the Marine Environment (ICBM), Oldenburg, Germany","institution_ids":["https://openalex.org/I4405252970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013095317","display_name":"Verona Vandieken","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405252970","display_name":"Institute for Chemistry and Biology of the Marine Environment","ror":"https://ror.org/0060pja03","country_code":"DE","type":"education","lineage":["https://openalex.org/I129877168","https://openalex.org/I4405252970"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Verona Vandieken","raw_affiliation_strings":["Institute for Chemistry and Biology of the Marine Environment (ICBM), Oldenburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Chemistry and Biology of the Marine Environment (ICBM), Oldenburg, Germany","institution_ids":["https://openalex.org/I4405252970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002906837","display_name":"J\u00f6rn Petersen","orcid":"https://orcid.org/0000-0001-6223-5575","observed_orcids":["https://orcid.org/0000-0001-6223-5575"]},"institutions":[{"id":"https://openalex.org/I7935750","display_name":"Leibniz Institute DSMZ \u2013 German Collection of Microorganisms and Cell Cultures","ror":"https://ror.org/02tyer376","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I7935750"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J\u00f6rn Petersen","raw_affiliation_strings":["Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany","institution_ids":["https://openalex.org/I7935750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023696415","display_name":"Nikos C. Kyrpides","orcid":"https://orcid.org/0000-0002-6131-0462","observed_orcids":["https://orcid.org/0000-0002-6131-0462"]},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Nikos C. Kyrpides","raw_affiliation_strings":["Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, California USA ; Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia","Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia","Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, California USA ; Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I185163786","https://openalex.org/I196679689"]},{"raw_affiliation_string":"Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I185163786"]},{"raw_affiliation_string":"Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, California, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006298901","display_name":"Tanja Woyke","orcid":"https://orcid.org/0000-0002-9485-5637","observed_orcids":["https://orcid.org/0000-0002-9485-5637"]},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanja Woyke","raw_affiliation_strings":["Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, California, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023134115","display_name":"Nicole Shapiro","orcid":"https://orcid.org/0000-0002-5405-7761","observed_orcids":["https://orcid.org/0000-0002-5405-7761"]},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicole Shapiro","raw_affiliation_strings":["Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, California, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056895519","display_name":"Markus G\u00f6ker","orcid":"https://orcid.org/0000-0002-5144-6200","observed_orcids":["https://orcid.org/0000-0002-5144-6200"]},"institutions":[{"id":"https://openalex.org/I7935750","display_name":"Leibniz Institute DSMZ \u2013 German Collection of Microorganisms and Cell Cultures","ror":"https://ror.org/02tyer376","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I7935750"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus G\u00f6ker","raw_affiliation_strings":["Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany","institution_ids":["https://openalex.org/I7935750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000733670","display_name":"Hans\u2010Peter Klenk","orcid":"https://orcid.org/0000-0001-6758-8150","observed_orcids":["https://orcid.org/0000-0001-6758-8150","https://orcid.org/0000-0003-0586-162X"]},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hans-Peter Klenk","raw_affiliation_strings":["School of Biology, Newcastle University, Newcastle upon Tyne, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biology, Newcastle University, Newcastle upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027041123","display_name":"Heribert Cypionka","orcid":"https://orcid.org/0000-0002-0424-5123","observed_orcids":["https://orcid.org/0000-0002-0424-5123"]},"institutions":[{"id":"https://openalex.org/I4405252970","display_name":"Institute for Chemistry and Biology of the Marine Environment","ror":"https://ror.org/0060pja03","country_code":"DE","type":"education","lineage":["https://openalex.org/I129877168","https://openalex.org/I4405252970"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Heribert Cypionka","raw_affiliation_strings":["Institute for Chemistry and Biology of the Marine Environment (ICBM), Oldenburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Chemistry and Biology of the Marine Environment (ICBM), Oldenburg, Germany","institution_ids":["https://openalex.org/I4405252970"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032617771","display_name":"Bert Engelen","orcid":"https://orcid.org/0000-0002-8117-0460","observed_orcids":["https://orcid.org/0000-0002-8117-0460"]},"institutions":[{"id":"https://openalex.org/I4405252970","display_name":"Institute for Chemistry and Biology of the Marine Environment","ror":"https://ror.org/0060pja03","country_code":"DE","type":"education","lineage":["https://openalex.org/I129877168","https://openalex.org/I4405252970"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Bert Engelen","raw_affiliation_strings":["Institute for Chemistry and Biology of the Marine Environment (ICBM), Oldenburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Chemistry and Biology of the Marine Environment (ICBM), Oldenburg, Germany","institution_ids":["https://openalex.org/I4405252970"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5032617771"],"corresponding_institution_ids":["https://openalex.org/I4405252970"],"apc_list":{"value":2145,"currency":"USD","value_usd":2145},"apc_paid":{"value":2145,"currency":"USD","value_usd":2145},"fwci":0.5179,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.68253403,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":96},"biblio":{"volume":"11","issue":"1","first_page":"25","last_page":"25"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.7235999703407288,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.7235999703407288,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.12060000002384186,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10995","display_name":"Methane Hydrates and Related Phenomena","score":0.042100001126527786,"subfield":{"id":"https://openalex.org/subfields/2304","display_name":"Environmental Chemistry"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/roseobacter-group","display_name":"Roseobacter group","score":0.925000011920929},{"id":"https://openalex.org/keywords/rhodobacteraceae","display_name":"Rhodobacteraceae","score":0.9660000205039978},{"id":"https://openalex.org/keywords/marine-sediment-bacteria","display_name":"marine sediment bacteria","score":0.7680000066757202},{"id":"https://openalex.org/keywords/dimethyl-sulfide-production","display_name":"dimethyl sulfide production","score":0.8349999785423279},{"id":"https://openalex.org/keywords/sulfur-cycling","display_name":"sulfur cycling","score":0.9229999780654907},{"id":"https://openalex.org/keywords/glutamate-metabolism","display_name":"glutamate metabolism","score":0.5509999990463257},{"id":"https://openalex.org/keywords/type-iv-pili","display_name":"type IV pili","score":0.7620000243186951},{"id":"https://openalex.org/keywords/biofilm-formation","display_name":"biofilm formation","score":0.8360000252723694},{"id":"https://openalex.org/keywords/quorum-quenching","display_name":"quorum sensing inhibition","score":0.8389999866485596},{"id":"https://openalex.org/keywords/n-acyl-homoserine-lactones","display_name":"N-acyl homoserine lactones","score":0.8970000147819519},{"id":"https://openalex.org/keywords/antibiotic-biosynthesis","display_name":"antibiotic biosynthesis","score":0.8820000290870667},{"id":"https://openalex.org/keywords/new-species","display_name":"new species","score":0.7720000147819519},{"id":"https://openalex.org/keywords/skagerrak","display_name":"Skagerrak","score":0.9110000133514404}],"concepts":[{"id":"https://openalex.org/C2777693772","wikidata":"https://www.wikidata.org/wiki/Q7368622","display_name":"Roseobacter","level":5,"score":0.8804095983505249},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7858969569206238},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5564664006233215},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5490322113037109},{"id":"https://openalex.org/C2779840497","wikidata":"https://www.wikidata.org/wiki/Q418214","display_name":"Homoserine","level":5,"score":0.5304543375968933},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.520737886428833},{"id":"https://openalex.org/C2777593447","wikidata":"https://www.wikidata.org/wiki/Q3817447","display_name":"Dimethylsulfoniopropionate","level":4,"score":0.5038487315177917},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4860416054725647},{"id":"https://openalex.org/C2779134900","wikidata":"https://www.wikidata.org/wiki/Q306579","display_name":"Alphaproteobacteria","level":4,"score":0.4839504063129425},{"id":"https://openalex.org/C118687296","wikidata":"https://www.wikidata.org/wiki/Q905754","display_name":"Quorum sensing","level":4,"score":0.3699806332588196},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.238030344247818},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.18188494443893433},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08192873001098633},{"id":"https://openalex.org/C2780892065","wikidata":"https://www.wikidata.org/wiki/Q184755","display_name":"Phytoplankton","level":3,"score":0.0},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.0},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.0},{"id":"https://openalex.org/C142796444","wikidata":"https://www.wikidata.org/wiki/Q181394","display_name":"Nutrient","level":2,"score":0.0}],"mesh":[],"locations_count":11,"locations":[{"id":"doi:10.1186/s40793-016-0143-0","doi":"https://doi.org/10.1186/s40793-016-0143-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40793-016-0143-0","pdf_url":"https://environmentalmicrobiome.biomedcentral.com/track/pdf/10.1186/s40793-016-0143-0","source":{"id":"https://openalex.org/S174963459","display_name":"Standards in Genomic Sciences","issn_l":"1944-3277","issn":["1944-3277"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","poland-70"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Standards in Genomic Sciences","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4818494","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4818494","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Stand Genomic Sci","raw_type":"Text"},{"id":"pmid:27042262","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27042262","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Standards in genomic sciences","raw_type":"Case Reports"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt37s1p8pr","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/37s1p8pr","pdf_url":"https://escholarship.org/content/qt37s1p8pr/qt37s1p8pr.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Environmental Microbiome, vol 11, iss 1","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt37s1p8pr","doi":null,"is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/37s1p8pr","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Standards in genomic sciences, vol 11, iss 1","raw_type":"article"},{"id":"pmh:oai:goescholar:1/13486","doi":null,"is_oa":true,"landing_page_url":"http://resolver.sub.uni-goettingen.de/purl?gs-1/13486","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journalArticle"},{"id":"pmh:oai:osti.gov:1288270","doi":null,"is_oa":false,"landing_page_url":"https://www.osti.gov/biblio/1288270","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1379156","doi":null,"is_oa":false,"landing_page_url":"https://www.osti.gov/biblio/1379156","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1618955","doi":null,"is_oa":false,"landing_page_url":"https://www.osti.gov/biblio/1618955","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:publications.goettingen-research-online.de:2/41120","doi":null,"is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gro-2/41120","pdf_url":null,"source":{"id":"https://openalex.org/S7407055187","display_name":"GRO","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:qt37s1p8pr","doi":null,"is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/37s1p8pr","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kanukollu, S; Voget, S; Pohlner, M; Vandieken, V; Petersen, J; Kyrpides, NC; \u00c2\u00a0et al.(2016). Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment. Standards in Genomic Sciences, 11(1). doi: 10.1186/s40793-016-0143-0. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/37s1p8pr","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s40793-016-0143-0","doi":"https://doi.org/10.1186/s40793-016-0143-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40793-016-0143-0","pdf_url":"https://environmentalmicrobiome.biomedcentral.com/track/pdf/10.1186/s40793-016-0143-0","source":{"id":"https://openalex.org/S174963459","display_name":"Standards in Genomic Sciences","issn_l":"1944-3277","issn":["1944-3277"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","poland-70"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Standards in Genomic Sciences","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.462799996137619}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1414775356","display_name":null,"funder_award_id":"No. DE-AC02- 05-CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1816284028","display_name":null,"funder_award_id":"Contract No. DE-AC02-05-CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G365575497","display_name":null,"funder_award_id":"No. DE-AC02-05-CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3685081974","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4147837720","display_name":null,"funder_award_id":"Transregio-SFB 51","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G419881185","display_name":null,"funder_award_id":"DEAC02\u201305CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G42916606","display_name":null,"funder_award_id":"DE AC02 05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6652958823","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7205239661","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G805243471","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G834277795","display_name":null,"funder_award_id":"DE\u2013AC02\u201305CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320320295","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321870","display_name":"Georg-August-Universit\u00e4t G\u00f6ttingen","ror":"https://ror.org/01y9bpm73"},{"id":"https://openalex.org/F4320322322","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320334763","display_name":"Leibniz-Gemeinschaft","ror":"https://ror.org/01n6r0e97"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2332237794.pdf","grobid_xml":"https://content.openalex.org/works/W2332237794.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W1549531691","https://openalex.org/W1551460710","https://openalex.org/W1754569577","https://openalex.org/W1908709110","https://openalex.org/W1965219809","https://openalex.org/W1975778959","https://openalex.org/W1988665513","https://openalex.org/W1991056282","https://openalex.org/W1993696884","https://openalex.org/W1998906687","https://openalex.org/W2002543601","https://openalex.org/W2024247242","https://openalex.org/W2025020367","https://openalex.org/W2045843097","https://openalex.org/W2046267769","https://openalex.org/W2047206081","https://openalex.org/W2061721807","https://openalex.org/W2062786294","https://openalex.org/W2065431772","https://openalex.org/W2072731629","https://openalex.org/W2074744620","https://openalex.org/W2078090450","https://openalex.org/W2091030812","https://openalex.org/W2096404721","https://openalex.org/W2103017472","https://openalex.org/W2108230379","https://openalex.org/W2108313564","https://openalex.org/W2108394990","https://openalex.org/W2116206245","https://openalex.org/W2118225952","https://openalex.org/W2120902911","https://openalex.org/W2123089043","https://openalex.org/W2124704072","https://openalex.org/W2130956021","https://openalex.org/W2131271579","https://openalex.org/W2131869707","https://openalex.org/W2135374784","https://openalex.org/W2136231029","https://openalex.org/W2137516483","https://openalex.org/W2138502657","https://openalex.org/W2149429041","https://openalex.org/W2152770371","https://openalex.org/W2154910833","https://openalex.org/W2155806125","https://openalex.org/W2158859864","https://openalex.org/W2161746138","https://openalex.org/W2166865790","https://openalex.org/W2169772157","https://openalex.org/W2171840103","https://openalex.org/W2174342039","https://openalex.org/W2469730249","https://openalex.org/W2520998138","https://openalex.org/W2915868289","https://openalex.org/W4234064787","https://openalex.org/W4249358990"],"related_works":["https://openalex.org/W7124743795","https://openalex.org/W2101569279","https://openalex.org/W2082784746","https://openalex.org/W2536304297","https://openalex.org/W4365148720","https://openalex.org/W2346978991","https://openalex.org/W7100600653","https://openalex.org/W3156942924","https://openalex.org/W2122686176","https://openalex.org/W3124311017"],"abstract_inverted_index":{"Shimia":[0,42,93,246,260],"strain":[1,20,158],"SK013":[2,44,95,248,262],"is":[3,96,107,182,192],"an":[4],"aerobic,":[5],"Gram-negative,":[6],"rod":[7],"shaped":[8],"alphaproteobacterium":[9],"affiliated":[10],"with":[11],"the":[12,16,29,65,75,116,119,128,156,160,164,169,227,233,277],"Roseobacter":[13],"group":[14],"within":[15],"family":[17],"Rhodobacteraceae.":[18],"The":[19,37,61,256],"was":[21],"isolated":[22],"from":[23,100],"surface":[24],"sediment":[25],"(0-1":[26],"cm)":[27],"of":[28,41,67,109,148,155,171,218,259,273],"Skagerrak":[30],"at":[31,115,163],"114":[32],"m":[33],"below":[34],"sea":[35],"level.":[36],"4,049,808":[38],"bp":[39],"genome":[40,62,257],"str.":[43,94,247,261],"comprises":[45],"3,981":[46],"protein-coding":[47],"genes":[48,68,82,196,221],"and":[49,57,74,86,105,111,175,213,232,269],"47":[50],"RNA":[51],"genes.":[52],"It":[53],"contains":[54],"one":[55],"chromosome":[56],"no":[58],"extrachromosomal":[59],"elements.":[60],"analysis":[63,167,258],"revealed":[64,168],"presence":[66,170],"for":[69,83,188,198,210],"a":[70,141,151,172,176,186,253],"dimethylsulfoniopropionate":[71],"lyase,":[72],"demethylase":[73],"trimethylamine":[76],"methyltransferase":[77],"(mttB)":[78],"as":[79,81,140,201,205,207,252],"well":[80,206],"nitrate,":[84],"nitrite":[85],"dimethyl":[87,135],"sulfoxide":[88],"reduction.":[89],"This":[90,191],"indicates":[91],"that":[92],"able":[97],"to":[98,102,121,131,159,184,195,226,242,249,276],"switch":[99],"aerobic":[101,110],"anaerobic":[103,112],"metabolism":[104],"thus":[106],"capable":[108],"sulfur":[113,124],"cycling":[114],"seafloor.":[117,165],"Among":[118],"ability":[120],"convert":[122],"other":[123],"compounds":[125],"it":[126],"has":[127],"genetic":[129],"capacity":[130],"produce":[132],"climatically":[133],"active":[134],"sulfide.":[136],"Growth":[137],"on":[138],"glutamate":[139],"sole":[142],"carbon":[143],"source":[144],"results":[145],"in":[146,234],"formation":[147],"cell-connecting":[149],"filaments,":[150],"putative":[152],"phenotypic":[153,270],"adaptation":[154,271],"surface-associated":[157],"environmental":[161],"conditions":[162],"Genome":[166],"flagellum":[173],"(fla1)":[174],"type":[177],"IV":[178],"pilus":[179],"biogenesis,":[180],"which":[181],"speculated":[183],"be":[185,250],"prerequisite":[187],"biofilm":[189],"formation.":[190],"also":[193],"related":[194],"responsible":[197,209],"signalling":[199],"such":[200],"N-acyl":[202],"homoserine":[203],"lactones,":[204],"quip-genes":[208],"quorum":[211],"quenching":[212],"antibiotic":[214],"biosynthesis.":[215],"Pairwise":[216],"similarities":[217],"16S":[219],"rRNA":[220],"(98.56":[222],"%":[223,239],"sequence":[224,240],"similarity":[225,241],"next":[228],"relative":[229],"S.":[230,243],"haliotis)":[231,244],"silico":[235],"DNA-DNA":[236],"hybridization":[237],"(21.20":[238],"indicated":[245],"considered":[251],"new":[254],"species.":[255],"offered":[263],"first":[264],"insights":[265],"into":[266],"specific":[267],"physiological":[268],"mechanisms":[272],"Roseobacter-affiliated":[274],"bacteria":[275],"benthic":[278],"environment.":[279]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":2}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}