{"id":"https://openalex.org/W2331996339","doi":"https://doi.org/10.5897/ijbc2013.0086","title":"Bioinformatics with basic local alignment search tool (BLAST) and fast alignment (FASTA)","display_name":"Bioinformatics with basic local alignment search tool (BLAST) and fast alignment (FASTA)","publication_year":2014,"publication_date":"2014-04-30","ids":{"openalex":"https://openalex.org/W2331996339","doi":"https://doi.org/10.5897/ijbc2013.0086","mag":"2331996339"},"language":"en","primary_location":{"id":"doi:10.5897/ijbc2013.0086","doi":"https://doi.org/10.5897/ijbc2013.0086","is_oa":true,"landing_page_url":"https://doi.org/10.5897/ijbc2013.0086","pdf_url":"https://academicjournals.org/journal/JBSA/article-full-text-pdf/093849744377.pdf","source":{"id":"https://openalex.org/S4210201868","display_name":"Journal of Bioinformatics and Sequence Analysis","issn_l":"2141-2464","issn":["2141-2464"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":"https://openalex.org/P4310321074","host_organization_name":"Academic Journals","host_organization_lineage":["https://openalex.org/P4310321074"],"host_organization_lineage_names":["Academic Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Sequence Analysis","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://academicjournals.org/journal/JBSA/article-full-text-pdf/093849744377.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"S. Donkor Eric","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I138690464","display_name":"University of Ghana","ror":"https://ror.org/01r22mr83","country_code":"GH","type":"education","lineage":["https://openalex.org/I138690464"]}],"countries":["GH"],"is_corresponding":true,"raw_author_name":"S. Donkor Eric","raw_affiliation_strings":["Department of Microbiology, University of Ghana Medical School, Accra, Ghana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, University of Ghana Medical School, Accra, Ghana","institution_ids":["https://openalex.org/I138690464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072008008","display_name":"Nicholas T. K. D. Dayie","orcid":"https://orcid.org/0000-0003-4491-6902","observed_orcids":["https://orcid.org/0000-0003-4491-6902"]},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I138690464","display_name":"University of Ghana","ror":"https://ror.org/01r22mr83","country_code":"GH","type":"education","lineage":["https://openalex.org/I138690464"]}],"countries":["DK","GH"],"is_corresponding":false,"raw_author_name":"T. K. D. Dayie Nicholas","raw_affiliation_strings":["Department of Microbiology, University of Ghana Medical School, Accra, Ghana","Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, University of Ghana Medical School, Accra, Ghana","institution_ids":["https://openalex.org/I138690464"]},{"raw_affiliation_string":"Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5095517183","display_name":"K Adiku Theophilus","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I138690464","display_name":"University of Ghana","ror":"https://ror.org/01r22mr83","country_code":"GH","type":"education","lineage":["https://openalex.org/I138690464"]}],"countries":["GH"],"is_corresponding":false,"raw_author_name":"K Adiku Theophilus","raw_affiliation_strings":["Department of Microbiology, University of Ghana Medical School, Accra, Ghana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, University of Ghana Medical School, Accra, Ghana","institution_ids":["https://openalex.org/I138690464"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I138690464"],"apc_list":null,"apc_paid":null,"fwci":0.3305,"has_fulltext":true,"cited_by_count":73,"citation_normalized_percentile":{"value":0.55300672,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"6","issue":"1","first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.0034000000450760126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.0017999999690800905,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/blast","display_name":"BLAST","score":0.9980000257492065},{"id":"https://openalex.org/keywords/fasta","display_name":"FASTA","score":0.996999979019165},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"sequence alignment","score":0.9179999828338623},{"id":"https://openalex.org/keywords/sequence-similarity","display_name":"sequence similarity","score":0.6980000138282776},{"id":"https://openalex.org/keywords/protein-sequence-comparison","display_name":"protein sequence comparison","score":0.6639999747276306},{"id":"https://openalex.org/keywords/divergent-sequences","display_name":"divergent sequences","score":0.5709999799728394},{"id":"https://openalex.org/keywords/prokaryotes","display_name":"prokaryotes","score":0.7160000205039978},{"id":"https://openalex.org/keywords/bioinformatics-software","display_name":"bioinformatics software","score":0.597000002861023}],"concepts":[{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.5962919592857361},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.585929274559021},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5230456590652466},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5206384062767029},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5026404857635498},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.49505415558815},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.46907466650009155},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46594369411468506},{"id":"https://openalex.org/C39234202","wikidata":"https://www.wikidata.org/wiki/Q2904159","display_name":"Comparative biology","level":2,"score":0.45490938425064087},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.43236833810806274},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3779011368751526},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1920403242111206},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1091746985912323},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5897/ijbc2013.0086","doi":"https://doi.org/10.5897/ijbc2013.0086","is_oa":true,"landing_page_url":"https://doi.org/10.5897/ijbc2013.0086","pdf_url":"https://academicjournals.org/journal/JBSA/article-full-text-pdf/093849744377.pdf","source":{"id":"https://openalex.org/S4210201868","display_name":"Journal of Bioinformatics and Sequence Analysis","issn_l":"2141-2464","issn":["2141-2464"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":"https://openalex.org/P4310321074","host_organization_name":"Academic Journals","host_organization_lineage":["https://openalex.org/P4310321074"],"host_organization_lineage_names":["Academic Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Sequence Analysis","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.5897/ijbc2013.0086","doi":"https://doi.org/10.5897/ijbc2013.0086","is_oa":true,"landing_page_url":"https://doi.org/10.5897/ijbc2013.0086","pdf_url":"https://academicjournals.org/journal/JBSA/article-full-text-pdf/093849744377.pdf","source":{"id":"https://openalex.org/S4210201868","display_name":"Journal of Bioinformatics and Sequence Analysis","issn_l":"2141-2464","issn":["2141-2464"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":"https://openalex.org/P4310321074","host_organization_name":"Academic Journals","host_organization_lineage":["https://openalex.org/P4310321074"],"host_organization_lineage_names":["Academic Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Sequence Analysis","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2331996339.pdf","grobid_xml":"https://content.openalex.org/works/W2331996339.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1558365920","https://openalex.org/W1568537742","https://openalex.org/W1955121107","https://openalex.org/W1965493218","https://openalex.org/W1992595091","https://openalex.org/W2002422491","https://openalex.org/W2015292449","https://openalex.org/W2021639324","https://openalex.org/W2029195137","https://openalex.org/W2045540004","https://openalex.org/W2055043387","https://openalex.org/W2062475681","https://openalex.org/W2065315036","https://openalex.org/W2103903744","https://openalex.org/W2138270253","https://openalex.org/W2148319892","https://openalex.org/W2157975034","https://openalex.org/W2158714788","https://openalex.org/W2159364800","https://openalex.org/W2163956552","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W200419270","https://openalex.org/W1978204300","https://openalex.org/W2055043387","https://openalex.org/W3176601331","https://openalex.org/W1755435740","https://openalex.org/W4251097584","https://openalex.org/W2015292449","https://openalex.org/W4241334639","https://openalex.org/W4250721369","https://openalex.org/W2132468289"],"abstract_inverted_index":{"Following":[0],"advances":[1],"in":[2,12,92,125,137,153],"DNA":[3],"and":[4,37,49,54,62,76,90,97,113,121,127],"protein":[5],"sequencing,":[6],"the":[7,71],"application":[8],"of":[9,22,34,60,88,144,147],"computational":[10],"approaches":[11],"analysing":[13],"biological":[14,27],"data":[15],"has":[16],"become":[17,57],"a":[18,145,154],"very":[19],"important":[20],"aspect":[21],"biology.":[23],"Evaluating":[24],"similarities":[25],"between":[26],"sequences":[28,136],"is":[29,64],"crucial":[30],"to":[31,66,78,110,132],"our":[32],"understanding":[33],"evolutionary":[35],"biology,":[36],"this":[38],"can":[39,74],"be":[40,111,130,150],"achieved":[41],"by":[42],"basic":[43,162],"local":[44,163],"alignment":[45,51,164,169],"search":[46,165],"tool":[47,166],"(BLAST)":[48],"fast":[50,168],"(FASTA).":[52],"BLAST":[53,89,96,108,120,155],"FASTA":[55,91,98,122,157],"have":[56],"fundamental":[58],"tools":[59],"biology":[61],"it":[63],"essential":[65],"know":[67],"how":[68,77],"they":[69,73],"operate,":[70],"task":[72],"accomplish":[75],"accurately":[79],"interpret":[80],"their":[81],"output.":[82],"This":[83],"paper":[84],"provides":[85],"an":[86],"analysis":[87],"sequence":[93,171],"analysis.":[94],"Both":[95,119],"algorithms":[99],"are":[100,123],"appropriate":[101],"for":[102],"determining":[103],"highly":[104,134],"similar":[105],"sequences.":[106],"However,":[107],"appears":[109],"faster":[112],"also":[114],"more":[115],"accurate":[116],"than":[117],"FASTA.":[118],"limited":[124],"sensitivity":[126],"may":[128,149],"not":[129],"able":[131],"capture":[133],"divergent":[135],"some":[138],"cases.":[139],"Consequently,":[140],"evolutionarily":[141],"diverse":[142],"members":[143],"family":[146],"proteins":[148],"missed":[151],"out":[152],"or":[156],"search.":[158],"Key":[159],"words:":[160],"Bioinformatics,":[161],"(BLAST),":[167],"(FASTA),":[170],"alignment,":[172],"prokaryotes.":[173]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2016,"cited_by_count":3}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}