{"id":"https://openalex.org/W2312901664","doi":"https://doi.org/10.1111/2041-210x.12570","title":"Estimating abundance in the presence of species uncertainty","display_name":"Estimating abundance in the presence of species uncertainty","publication_year":2016,"publication_date":"2016-04-02","ids":{"openalex":"https://openalex.org/W2312901664","doi":"https://doi.org/10.1111/2041-210x.12570","mag":"2312901664"},"language":"en","primary_location":{"id":"doi:10.1111/2041-210x.12570","doi":"https://doi.org/10.1111/2041-210x.12570","is_oa":true,"landing_page_url":"https://doi.org/10.1111/2041-210x.12570","pdf_url":"https://besjournals.onlinelibrary.wiley.com/doi/pdfdirect/10.1111/2041-210X.12570","source":{"id":"https://openalex.org/S1131227","display_name":"Methods in Ecology and Evolution","issn_l":"2041-210X","issn":["2041-210X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","jufo-3","ki-jl-2","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Ecology and Evolution","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://besjournals.onlinelibrary.wiley.com/doi/pdfdirect/10.1111/2041-210X.12570","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065813869","display_name":"Thierry Chambert","orcid":"https://orcid.org/0000-0002-9450-9080","observed_orcids":["https://orcid.org/0000-0002-9450-9080"]},"institutions":[{"id":"https://openalex.org/I1286329397","display_name":"United States Geological Survey","ror":"https://ror.org/035a68863","country_code":"US","type":"government","lineage":["https://openalex.org/I1286329397","https://openalex.org/I1335927249"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Thierry Chambert","raw_affiliation_strings":["Department of Ecosystem Science and Management, Pennsylvania State University, University Park, PA, 16802 USA","U.S. Geological Survey, Patuxent Wildlife Research Center, Laurel, MD, 20708 USA"],"raw_orcid":"https://orcid.org/0000-0002-9450-9080","affiliations":[{"raw_affiliation_string":"Department of Ecosystem Science and Management, Pennsylvania State University, University Park, PA, 16802 USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"U.S. Geological Survey, Patuxent Wildlife Research Center, Laurel, MD, 20708 USA","institution_ids":["https://openalex.org/I1286329397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025967519","display_name":"Blake R. Hossack","orcid":"https://orcid.org/0000-0001-7456-9564","observed_orcids":["https://orcid.org/0000-0001-7456-9564"]},"institutions":[{"id":"https://openalex.org/I4392021179","display_name":"Northern Rocky Mountain Science Center","ror":"https://ror.org/04e41m429","country_code":"US","type":"government","lineage":["https://openalex.org/I1286329397","https://openalex.org/I1335927249","https://openalex.org/I4392021179"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Blake R. Hossack","raw_affiliation_strings":["U.S. Geological Survey, Northern Rocky Mountain Science Center, Aldo Leopold Wilderness Research Institute, Missoula, MT, 59801 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Geological Survey, Northern Rocky Mountain Science Center, Aldo Leopold Wilderness Research Institute, Missoula, MT, 59801 USA","institution_ids":["https://openalex.org/I4392021179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000410757","display_name":"LeeAnn Fishback","orcid":"https://orcid.org/0000-0001-5972-8678","observed_orcids":["https://orcid.org/0000-0001-5972-8678"]},"institutions":[{"id":"https://openalex.org/I4210089781","display_name":"Churchill Northern Studies Centre","ror":"https://ror.org/007r8rq24","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210089781"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"LeeAnn Fishback","raw_affiliation_strings":["Churchill Northern Studies Centre, P.O. Box 610, Churchill, MB, R0B 0E0 Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Churchill Northern Studies Centre, P.O. Box 610, Churchill, MB, R0B 0E0 Canada","institution_ids":["https://openalex.org/I4210089781"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001403609","display_name":"Jon M. Davenport","orcid":"https://orcid.org/0000-0002-9911-2779","observed_orcids":["https://orcid.org/0000-0002-9911-2779"]},"institutions":[{"id":"https://openalex.org/I161165907","display_name":"Southeast Missouri State University","ror":"https://ror.org/010n41y16","country_code":"US","type":"education","lineage":["https://openalex.org/I161165907"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jon M. Davenport","raw_affiliation_strings":["Department of Biology, Southeast Missouri State University, One University Plaza, MS 6200, Cape Girardeau, MO, 63701 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Southeast Missouri State University, One University Plaza, MS 6200, Cape Girardeau, MO, 63701 USA","institution_ids":["https://openalex.org/I161165907"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5065813869"],"corresponding_institution_ids":["https://openalex.org/I1286329397","https://openalex.org/I130769515"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":null,"fwci":1.1968,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.80735931,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":96},"biblio":{"volume":"7","issue":"9","first_page":"1041","last_page":"1049"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13546","display_name":"Census and Population Estimation","score":0.7939000129699707,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13546","display_name":"Census and Population Estimation","score":0.7939000129699707,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10199","display_name":"Wildlife Ecology and Conservation","score":0.147599995136261,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10089","display_name":"Avian ecology and behavior","score":0.008299999870359898,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/n-mixture-models","display_name":"N-mixture models","score":0.9359999895095825},{"id":"https://openalex.org/keywords/species-identification","display_name":"species identification","score":0.46299999952316284},{"id":"https://openalex.org/keywords/abundance-estimation","display_name":"abundance estimation","score":0.9580000042915344},{"id":"https://openalex.org/keywords/detection-probability","display_name":"detection probability","score":0.8870000243186951},{"id":"https://openalex.org/keywords/bayesian-hierarchical-model","display_name":"Bayesian hierarchical model","score":0.7129999995231628},{"id":"https://openalex.org/keywords/stickleback","display_name":"stickleback","score":0.5979999899864197},{"id":"https://openalex.org/keywords/culaea-inconstans","display_name":"Culaea inconstans","score":0.8960000276565552},{"id":"https://openalex.org/keywords/pungitius-pungitius","display_name":"Pungitius pungitius","score":1.0},{"id":"https://openalex.org/keywords/sympatric-fish","display_name":"sympatric fish","score":0.656000018119812},{"id":"https://openalex.org/keywords/early-life-stages","display_name":"early life stages","score":0.8560000061988831},{"id":"https://openalex.org/keywords/habitat-covariates","display_name":"habitat covariates","score":0.75},{"id":"https://openalex.org/keywords/sample-size","display_name":"sample size","score":0.781000018119812}],"concepts":[{"id":"https://openalex.org/C77077793","wikidata":"https://www.wikidata.org/wiki/Q336019","display_name":"Abundance (ecology)","level":2,"score":0.6841537952423096},{"id":"https://openalex.org/C119043178","wikidata":"https://www.wikidata.org/wiki/Q320723","display_name":"Covariate","level":2,"score":0.6092419624328613},{"id":"https://openalex.org/C2778514742","wikidata":"https://www.wikidata.org/wiki/Q16245026","display_name":"Abundance estimation","level":3,"score":0.5639913082122803},{"id":"https://openalex.org/C61224824","wikidata":"https://www.wikidata.org/wiki/Q2260434","display_name":"Mixture model","level":2,"score":0.5314067006111145},{"id":"https://openalex.org/C111350023","wikidata":"https://www.wikidata.org/wiki/Q1191869","display_name":"Markov chain Monte Carlo","level":3,"score":0.4953988790512085},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.48483169078826904},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4640938639640808},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.4553842842578888},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.4302920699119568},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3947659134864807},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.3908420205116272},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.26919126510620117},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2600955367088318},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16860467195510864}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1111/2041-210x.12570","doi":"https://doi.org/10.1111/2041-210x.12570","is_oa":true,"landing_page_url":"https://doi.org/10.1111/2041-210x.12570","pdf_url":"https://besjournals.onlinelibrary.wiley.com/doi/pdfdirect/10.1111/2041-210X.12570","source":{"id":"https://openalex.org/S1131227","display_name":"Methods in Ecology and Evolution","issn_l":"2041-210X","issn":["2041-210X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","jufo-3","ki-jl-2","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Ecology and Evolution","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1111/2041-210x.12570","doi":"https://doi.org/10.1111/2041-210x.12570","is_oa":true,"landing_page_url":"https://doi.org/10.1111/2041-210x.12570","pdf_url":"https://besjournals.onlinelibrary.wiley.com/doi/pdfdirect/10.1111/2041-210X.12570","source":{"id":"https://openalex.org/S1131227","display_name":"Methods in Ecology and Evolution","issn_l":"2041-210X","issn":["2041-210X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","jufo-3","ki-jl-2","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Ecology and Evolution","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.5769000053405762,"display_name":"Life below water"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G8129026860","display_name":null,"funder_award_id":"WB13734","funder_id":"https://openalex.org/F4320332183","funder_display_name":"U.S. Geological Survey"}],"funders":[{"id":"https://openalex.org/F4320306320","display_name":"Earthwatch Institute","ror":"https://ror.org/0585vsm16"},{"id":"https://openalex.org/F4320321561","display_name":"Churchill Northern Studies Centre","ror":"https://ror.org/007r8rq24"},{"id":"https://openalex.org/F4320332183","display_name":"U.S. Geological Survey","ror":"https://ror.org/035a68863"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2312901664.pdf","grobid_xml":"https://content.openalex.org/works/W2312901664.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W68436435","https://openalex.org/W613414432","https://openalex.org/W1496395838","https://openalex.org/W1526320554","https://openalex.org/W1541979918","https://openalex.org/W1562604665","https://openalex.org/W1565148159","https://openalex.org/W1912849972","https://openalex.org/W1964532093","https://openalex.org/W1967574201","https://openalex.org/W1990713419","https://openalex.org/W2001691516","https://openalex.org/W2014992919","https://openalex.org/W2022828073","https://openalex.org/W2026259401","https://openalex.org/W2040078406","https://openalex.org/W2075319270","https://openalex.org/W2075426303","https://openalex.org/W2077330697","https://openalex.org/W2090307220","https://openalex.org/W2093223772","https://openalex.org/W2098012392","https://openalex.org/W2105903342","https://openalex.org/W2107146381","https://openalex.org/W2109749951","https://openalex.org/W2131680030","https://openalex.org/W2134012062","https://openalex.org/W2153090038","https://openalex.org/W2155115177","https://openalex.org/W2156749037","https://openalex.org/W2157289208","https://openalex.org/W2158836917","https://openalex.org/W2163798681","https://openalex.org/W2170105525","https://openalex.org/W2333357124","https://openalex.org/W2522091196","https://openalex.org/W3041173390","https://openalex.org/W4230568934","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2949894398","https://openalex.org/W2170105525","https://openalex.org/W4411535747","https://openalex.org/W2257710913","https://openalex.org/W4391411440","https://openalex.org/W2188070191","https://openalex.org/W2293693960","https://openalex.org/W2789575653","https://openalex.org/W2156749037","https://openalex.org/W4412629718"],"abstract_inverted_index":{"Summary":[0],"N\u2010mixture":[1,87,204,240],"models":[2,22,88],"have":[3,23],"become":[4],"a":[5,83,120,171,202,246,257],"popular":[6],"method":[7],"for":[8,29,56,64,91,127,187,245],"estimating":[9,65,97,106],"abundance":[10,218,267],"of":[11,86,108,111,137,162,208,238,249,266,272],"free\u2010ranging":[12],"animals":[13],"that":[14,32,89],"are":[15,278],"not":[16],"marked":[17],"or":[18,46],"identified":[19,35],"individually.":[20],"These":[21],"been":[24],"used":[25,170],"on":[26,140],"count":[27,141],"data":[28,142],"single":[30],"species":[31,40,55,92,112,210,254],"can":[33,70,78],"be":[34,243],"with":[36,233],"certainty.":[37],"However,":[38],"co\u2010occurring":[39],"often":[41,71],"look":[42],"similar":[43],"during":[44],"one":[45],"more":[47,280],"life":[48,73,275],"stages,":[49,276],"making":[50],"it":[51,69],"difficult":[52,281],"to":[53,75,96,174,198,282],"assign":[54],"all":[57,125],"recorded":[58],"captures.":[59],"This":[60,236],"uncertainty":[61,255],"creates":[62],"problems":[63],"species\u2010specific":[66],"abundance,":[67],"and":[68,100,123,153,159,178,190,223,251,268],"limit":[72],"stages":[74],"which":[76,277],"we":[77,169],"make":[79],"inference.":[80],"We":[81,114,133,184],"present":[82,134],"new":[84,228],"extension":[85,237],"accounts":[90],"uncertainty.":[93],"In":[94,167,214],"addition":[95],"site\u2010specific":[98],"abundances":[99],"detection":[101],"probabilities,":[102],"this":[103,116],"model":[104,118,130,139,177,197,205,229,241],"allows":[105],"probability":[107],"correct":[109],"assignment":[110],"identity.":[113],"implement":[115],"hierarchical":[117],"in":[119],"Bayesian":[121],"framework":[122],"provide":[124],"code":[126],"running":[128],"the":[129,138,148,154,176,215,239],"inBUGSlanguage":[131],"programs.":[132],"an":[135],"application":[136],"from":[143],"two":[144],"sympatric":[145],"freshwater":[146],"fishes,":[147],"brook":[149],"stickleback":[150,156],"(Culaea":[151],"inconstans)":[152],"ninespine":[155],"(Pungitius":[157],"pungitius),":[158],"illustrate":[160,179],"implementation":[161],"covariate":[163],"effects":[164],"(habitat":[165],"characteristics).":[166],"addition,":[168],"simulation":[172],"study":[173],"validate":[175],"potential":[180],"sample":[181],"size":[182],"issues.":[183],"also":[185],"compared,":[186],"both":[188],"real":[189],"simulated":[191],"data,":[192],"estimates":[193,219,232],"provided":[194,230],"by":[195,201],"our":[196,227],"those":[199],"obtained":[200],"simple":[203],"when":[206],"captures":[207],"unknown":[209],"identification":[211],"were":[212],"discarded.":[213],"latter":[216],"case,":[217],"appeared":[220],"highly":[221],"biased":[222],"very":[224],"imprecise,":[225],"while":[226],"unbiased":[231],"higher":[234],"precision.":[235],"should":[242,261],"useful":[244],"wide":[247],"variety":[248],"studies":[250],"taxa,":[252],"as":[253],"is":[256],"common":[258],"issue.":[259],"It":[260],"notably":[262],"help":[263],"improve":[264],"investigation":[265],"vital":[269],"rate":[270],"characteristics":[271],"organisms\u2019":[273],"early":[274],"sometimes":[279],"identify":[283],"than":[284],"adults.":[285]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}