{"id":"https://openalex.org/W2296776986","doi":null,"title":"Miniature inverted repeat transposable elements in rice - origin and function","display_name":"Miniature inverted repeat transposable elements in rice - origin and function","publication_year":2004,"publication_date":"2004-09-30","ids":{"openalex":"https://openalex.org/W2296776986","mag":"2296776986"},"language":"en","primary_location":{"id":"pmh:oai:oaktrust.library.tamu.edu:1969.1/318","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/1969.1/318","pdf_url":"https://hdl.handle.net/1969.1/318","source":{"id":"https://openalex.org/S4306400291","display_name":"OakTrust (Texas A&M University Libraries)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I91045830","host_organization_name":"Texas A&M University","host_organization_lineage":["https://openalex.org/I91045830"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hdl.handle.net/1969.1/318","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042971895","display_name":"Guojun Yang","orcid":"https://orcid.org/0009-0004-8501-5515","observed_orcids":["https://orcid.org/0009-0004-8501-5515"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Guojun Yang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5042971895"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12828","display_name":"Plant Genetic and Mutation Studies","score":0.001500000013038516,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/miniature-inverted-repeat-transposable-elements","display_name":"miniature inverted-repeat transposable elements","score":0.9919999837875366},{"id":"https://openalex.org/keywords/rice-genome","display_name":"rice genome","score":0.9599999785423279},{"id":"https://openalex.org/keywords/inverted-terminal-repeats","display_name":"inverted terminal repeats","score":0.8050000071525574},{"id":"https://openalex.org/keywords/target-site-duplication","display_name":"target site duplication","score":0.9629999995231628},{"id":"https://openalex.org/keywords/transposition","display_name":"transposition","score":0.5070000290870667},{"id":"https://openalex.org/keywords/gene-expression-regulation","display_name":"gene expression regulation","score":0.6320000290870667},{"id":"https://openalex.org/keywords/promoter-activity","display_name":"promoter activity","score":0.8339999914169312},{"id":"https://openalex.org/keywords/promoter-silencing","display_name":"promoter silencing","score":0.7409999966621399},{"id":"https://openalex.org/keywords/transposable-element-evolution","display_name":"transposable element evolution","score":0.6610000133514404}],"concepts":[{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.782943606376648},{"id":"https://openalex.org/C2910146623","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"DNA Transposable Elements","level":5,"score":0.5211431980133057},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4804529547691345},{"id":"https://openalex.org/C51603236","wikidata":"https://www.wikidata.org/wiki/Q4852694","display_name":"Inverted repeat","level":4,"score":0.46665167808532715},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4332008361816406},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40143871307373047},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.22670257091522217},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16510549187660217}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:oaktrust.library.tamu.edu:1969.1/318","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/1969.1/318","pdf_url":"https://hdl.handle.net/1969.1/318","source":{"id":"https://openalex.org/S4306400291","display_name":"OakTrust (Texas A&M University Libraries)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I91045830","host_organization_name":"Texas A&M University","host_organization_lineage":["https://openalex.org/I91045830"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},{"id":"mag:2296776986","doi":null,"is_oa":false,"landing_page_url":"https://oaktrust.library.tamu.edu/handle/1969.1/318","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:oaktrust.library.tamu.edu:1969.1/318","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/1969.1/318","pdf_url":"https://hdl.handle.net/1969.1/318","source":{"id":"https://openalex.org/S4306400291","display_name":"OakTrust (Texas A&M University Libraries)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I91045830","host_organization_name":"Texas A&M University","host_organization_lineage":["https://openalex.org/I91045830"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1110199285","display_name":"Transgene Silencing: New Insight to Genetic Mechanisms","funder_award_id":"0110477","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2296776986.pdf","grobid_xml":"https://content.openalex.org/works/W2296776986.grobid-xml"},"referenced_works_count":201,"referenced_works":["https://openalex.org/W32692609","https://openalex.org/W49535912","https://openalex.org/W49806502","https://openalex.org/W105985058","https://openalex.org/W123348876","https://openalex.org/W193924159","https://openalex.org/W288385609","https://openalex.org/W338068718","https://openalex.org/W342950079","https://openalex.org/W345637439","https://openalex.org/W578868330","https://openalex.org/W630448373","https://openalex.org/W1489673536","https://openalex.org/W1490852317","https://openalex.org/W1492545002","https://openalex.org/W1494075612","https://openalex.org/W1518020988","https://openalex.org/W1525888561","https://openalex.org/W1532493902","https://openalex.org/W1546626371","https://openalex.org/W1557296883","https://openalex.org/W1572946039","https://openalex.org/W1582301784","https://openalex.org/W1639234679","https://openalex.org/W1643938048","https://openalex.org/W1700791820","https://openalex.org/W1754765669","https://openalex.org/W1838794444","https://openalex.org/W1875673113","https://openalex.org/W1884195890","https://openalex.org/W1901348204","https://openalex.org/W1938765268","https://openalex.org/W1950870983","https://openalex.org/W1952527981","https://openalex.org/W1963730017","https://openalex.org/W1964978125","https://openalex.org/W1965240831","https://openalex.org/W1965368044","https://openalex.org/W1967134681","https://openalex.org/W1968762182","https://openalex.org/W1970469974","https://openalex.org/W1972137701","https://openalex.org/W1972313958","https://openalex.org/W1972822910","https://openalex.org/W1973756239","https://openalex.org/W1974360095","https://openalex.org/W1975170660","https://openalex.org/W1975658108","https://openalex.org/W1977171359","https://openalex.org/W1979365595","https://openalex.org/W1979821280","https://openalex.org/W1983642572","https://openalex.org/W1983908470","https://openalex.org/W1985099936","https://openalex.org/W1985805297","https://openalex.org/W1986312970","https://openalex.org/W1987803067","https://openalex.org/W1988355097","https://openalex.org/W1991333931","https://openalex.org/W1991456235","https://openalex.org/W1992385391","https://openalex.org/W1993930918","https://openalex.org/W1995524273","https://openalex.org/W1996203670","https://openalex.org/W1997959867","https://openalex.org/W1999768674","https://openalex.org/W2000003816","https://openalex.org/W2002873026","https://openalex.org/W2004060771","https://openalex.org/W2004651173","https://openalex.org/W2005017337","https://openalex.org/W2005877477","https://openalex.org/W2008884012","https://openalex.org/W2010329731","https://openalex.org/W2011836444","https://openalex.org/W2012982610","https://openalex.org/W2016992246","https://openalex.org/W2018483804","https://openalex.org/W2020000145","https://openalex.org/W2024556021","https://openalex.org/W2025224078","https://openalex.org/W2027246443","https://openalex.org/W2027361898","https://openalex.org/W2030689262","https://openalex.org/W2033557967","https://openalex.org/W2035386424","https://openalex.org/W2035548756","https://openalex.org/W2035695102","https://openalex.org/W2036046606","https://openalex.org/W2036234991","https://openalex.org/W2041061349","https://openalex.org/W2041577338","https://openalex.org/W2044568749","https://openalex.org/W2048343533","https://openalex.org/W2048500913","https://openalex.org/W2048540261","https://openalex.org/W2049526710","https://openalex.org/W2051403136","https://openalex.org/W2053130764","https://openalex.org/W2055043387","https://openalex.org/W2055992143","https://openalex.org/W2057125823","https://openalex.org/W2057440187","https://openalex.org/W2059621805","https://openalex.org/W2065087210","https://openalex.org/W2066884369","https://openalex.org/W2067895067","https://openalex.org/W2068986932","https://openalex.org/W2069977817","https://openalex.org/W2070312499","https://openalex.org/W2070831180","https://openalex.org/W2071391879","https://openalex.org/W2071649356","https://openalex.org/W2071804506","https://openalex.org/W2075449221","https://openalex.org/W2075639230","https://openalex.org/W2076092946","https://openalex.org/W2077730022","https://openalex.org/W2078379075","https://openalex.org/W2079393593","https://openalex.org/W2080252841","https://openalex.org/W2080290072","https://openalex.org/W2082517103","https://openalex.org/W2083279383","https://openalex.org/W2085154635","https://openalex.org/W2085405889","https://openalex.org/W2085555544","https://openalex.org/W2086044772","https://openalex.org/W2086492419","https://openalex.org/W2087444622","https://openalex.org/W2087850488","https://openalex.org/W2090435604","https://openalex.org/W2090437002","https://openalex.org/W2090631526","https://openalex.org/W2091232945","https://openalex.org/W2091299698","https://openalex.org/W2091798474","https://openalex.org/W2092026879","https://openalex.org/W2092840143","https://openalex.org/W2093151987","https://openalex.org/W2093744637","https://openalex.org/W2094821946","https://openalex.org/W2094943798","https://openalex.org/W2095259929","https://openalex.org/W2097178552","https://openalex.org/W2097297471","https://openalex.org/W2101721245","https://openalex.org/W2102800408","https://openalex.org/W2104081677","https://openalex.org/W2105499815","https://openalex.org/W2108139609","https://openalex.org/W2111743803","https://openalex.org/W2113942795","https://openalex.org/W2118753423","https://openalex.org/W2120448616","https://openalex.org/W2120570844","https://openalex.org/W2121332208","https://openalex.org/W2122711136","https://openalex.org/W2123546399","https://openalex.org/W2123582659","https://openalex.org/W2125433331","https://openalex.org/W2128192811","https://openalex.org/W2129327381","https://openalex.org/W2129334025","https://openalex.org/W2131346206","https://openalex.org/W2133002406","https://openalex.org/W2136831585","https://openalex.org/W2137355990","https://openalex.org/W2141279132","https://openalex.org/W2141641903","https://openalex.org/W2143658931","https://openalex.org/W2145438731","https://openalex.org/W2146133538","https://openalex.org/W2149182242","https://openalex.org/W2150934173","https://openalex.org/W2151875342","https://openalex.org/W2152486450","https://openalex.org/W2155235128","https://openalex.org/W2156601528","https://openalex.org/W2158036331","https://openalex.org/W2158118972","https://openalex.org/W2158757371","https://openalex.org/W2160064257","https://openalex.org/W2164613615","https://openalex.org/W2164799476","https://openalex.org/W2165450181","https://openalex.org/W2168909179","https://openalex.org/W2171291651","https://openalex.org/W2171764091","https://openalex.org/W2212128169","https://openalex.org/W2287751931","https://openalex.org/W2320256363","https://openalex.org/W2332775983","https://openalex.org/W2395174933","https://openalex.org/W2396717670","https://openalex.org/W2398854272","https://openalex.org/W2403111956","https://openalex.org/W2415909431","https://openalex.org/W2949155276","https://openalex.org/W7017161425","https://openalex.org/W7097720820"],"related_works":["https://openalex.org/W2141272722","https://openalex.org/W2772656904","https://openalex.org/W2056671569","https://openalex.org/W2200925778","https://openalex.org/W2080290072","https://openalex.org/W2914296659","https://openalex.org/W7095313525","https://openalex.org/W2156406578","https://openalex.org/W2372227797","https://openalex.org/W2149335334"],"abstract_inverted_index":{"Transposable":[0],"elements":[1,17,25,94,114,129,165],"(TEs)":[2],"are":[3,8,19,130,237],"interspersed":[4],"repetitive":[5],"sequences":[6],"that":[7,81,124],"present":[9,74],"in":[10,26,51,75,117,234],"most":[11,21],"genomes.":[12],"Miniature":[13],"inverted":[14,58],"repeat":[15],"transposable":[16],"(MITEs)":[18],"the":[20,52,68,111,179,184,229],"numerous":[22],"Class":[23],"II":[24],"higher":[27],"eukaryotes.":[28],"Little":[29],"is":[30,73,175],"known":[31],"about":[32],"their":[33,160],"origin,":[34],"transposition":[35,107],"and":[36,47,61,95,97,126,137,163,174,189,209],"function.":[37],"In":[38],"this":[39,223],"study,":[40],"three":[41],"novel":[42],"MITE":[43,158,187],"families":[44],"(Kiddo,":[45],"MDM1":[46,96,210],"MDM2)":[48],"were":[49],"identified":[50,115],"rice":[53,194],"genome.":[54],"They":[55],"bear":[56],"terminal":[57],"repeats":[59],"(TIRs)":[60],"show":[62],"target":[63],"site":[64],"duplications":[65],"(TSDs)":[66],"at":[67],"insertion":[69],"sites.":[70],"Each":[71],"family":[72,99],"hundreds":[76],"of":[77,104,142,186,202,222,228,232],"copies":[78],"with":[79,110],"length":[80],"range":[82],"from":[83,166],"200":[84],"bp":[85],"to":[86,121,155,178,213],"400":[87],"bp.":[88],"An":[89],"evolutionary":[90,226],"relationship":[91],"between":[92],"Mutator":[93],"MDM2":[98],"was":[100,153],"established.":[101],"The":[102,225],"absence":[103],"an":[105],"observed":[106],"event,":[108],"together":[109],"mutated":[112],"ancestral":[113,164],"by":[116],"silico":[118],"analysis,":[119],"led":[120],"a":[122,145,149,193,199],"conclusion":[123],"Kiddo":[125,208],"its":[127],"autonomous":[128],"not":[131],"presently":[132],"active.":[133],"\\nTo":[134],"overcome":[135],"laborious":[136],"time":[138],"consuming":[139],"manual":[140],"analysis":[141],"MITEs":[143,203,233],"on":[144,183,204],"genomic":[146],"scale,":[147],"MAK,":[148],"computational":[150],"tool":[151],"kit,":[152],"developed":[154],"automatically":[156],"retrieve":[157],"sequences,":[159],"neighboring":[161],"genes":[162],"genome":[167],"sequences.":[168],"MAK":[169],"has":[170],"been":[171],"functionally":[172],"tested":[173],"now":[176],"available":[177],"research":[180],"community.":[181],"\\nStudies":[182],"effect":[185],"(Kiddo":[188],"MDM1)":[190],"insertions":[191],"into":[192],"ubiquitin":[195],"(rubq2)":[196],"promoter":[197,215],"revealed":[198],"two-edged":[200,230],"role":[201,231],"gene":[205,235],"regulation.":[206],"While":[207],"contribute":[211],"~40%":[212],"rubq2":[214],"activity,":[216],"they":[217],"also":[218],"induce":[219],"progressive":[220],"silencing":[221],"promoter.":[224],"implications":[227],"regulation":[236],"discussed.":[238]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}