{"id":"https://openalex.org/W2292570237","doi":null,"title":"Structural Characterization of Selected Pdases","display_name":"Structural Characterization of Selected Pdases","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2292570237","mag":"2292570237"},"language":"en","primary_location":{"id":"pmh:oai:cuscholar:ww72bb81p","doi":null,"is_oa":true,"landing_page_url":"https://scholar.colorado.edu/concern/undergraduate_honors_theses/ww72bb81p","pdf_url":"http://scholar.colorado.edu/downloads/9k41zd89r","source":{"id":"https://openalex.org/S4306401957","display_name":"CU Scholar (University of Colorado Boulder)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I188538660","host_organization_name":"University of Colorado Boulder","host_organization_lineage":["https://openalex.org/I188538660"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Undergraduate Honors Thesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://scholar.colorado.edu/downloads/9k41zd89r","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110640426","display_name":"Samantha Wellington","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Samantha Wellington","raw_affiliation_strings":["University of Colorado Boulder"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Colorado Boulder","institution_ids":["https://openalex.org/I188538660"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5110640426"],"corresponding_institution_ids":["https://openalex.org/I188538660"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.7070000171661377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.7070000171661377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.13459999859333038,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.11829999834299088,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-aptamers","display_name":"RNA aptamers","score":0.9240000247955322},{"id":"https://openalex.org/keywords/rna-structure","display_name":"RNA structure","score":0.628000020980835},{"id":"https://openalex.org/keywords/rna-base-modifications","display_name":"RNA base modifications","score":0.5450000166893005},{"id":"https://openalex.org/keywords/a-form-helix","display_name":"A-form helix","score":0.781000018119812},{"id":"https://openalex.org/keywords/circular-dichroism","display_name":"circular dichroism","score":0.8460000157356262},{"id":"https://openalex.org/keywords/selex","display_name":"SELEX","score":0.5180000066757202},{"id":"https://openalex.org/keywords/substrate-specificity","display_name":"substrate specificity","score":0.5099999904632568}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7225191593170166},{"id":"https://openalex.org/C133571119","wikidata":"https://www.wikidata.org/wiki/Q899102","display_name":"Circular dichroism","level":2,"score":0.6691739559173584},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.6078004837036133},{"id":"https://openalex.org/C10879258","wikidata":"https://www.wikidata.org/wiki/Q76826611","display_name":"RNase P","level":4,"score":0.5480681657791138},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.4970081150531769},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.4697309732437134},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.4618612229824066},{"id":"https://openalex.org/C2779554091","wikidata":"https://www.wikidata.org/wiki/Q182990","display_name":"Uracil","level":3,"score":0.4563579559326172},{"id":"https://openalex.org/C2780841128","wikidata":"https://www.wikidata.org/wiki/Q5073781","display_name":"Characterization (materials science)","level":2,"score":0.4331704080104828},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.41859152913093567},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.3903712034225464},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3324909508228302},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.20574921369552612},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.19932293891906738},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.17036762833595276},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.09299167990684509},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:cuscholar:ww72bb81p","doi":null,"is_oa":true,"landing_page_url":"https://scholar.colorado.edu/concern/undergraduate_honors_theses/ww72bb81p","pdf_url":"http://scholar.colorado.edu/downloads/9k41zd89r","source":{"id":"https://openalex.org/S4306401957","display_name":"CU Scholar (University of Colorado Boulder)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I188538660","host_organization_name":"University of Colorado Boulder","host_organization_lineage":["https://openalex.org/I188538660"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Undergraduate Honors Thesis"},{"id":"pmh:oai:scholar.colorado.edu:honr_theses-1471","doi":null,"is_oa":true,"landing_page_url":"https://scholar.colorado.edu/honr_theses/276","pdf_url":"https://scholar.colorado.edu/honr_theses/276","source":{"id":"https://openalex.org/S4306401957","display_name":"CU Scholar (University of Colorado Boulder)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I188538660","host_organization_name":"University of Colorado Boulder","host_organization_lineage":["https://openalex.org/I188538660"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Undergraduate Honors Theses","raw_type":"text"},{"id":"mag:2292570237","doi":null,"is_oa":false,"landing_page_url":"http://scholar.colorado.edu/cgi/viewcontent.cgi?article=1471&context=honr_theses","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:cuscholar:ww72bb81p","doi":null,"is_oa":true,"landing_page_url":"https://scholar.colorado.edu/concern/undergraduate_honors_theses/ww72bb81p","pdf_url":"http://scholar.colorado.edu/downloads/9k41zd89r","source":{"id":"https://openalex.org/S4306401957","display_name":"CU Scholar (University of Colorado Boulder)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I188538660","host_organization_name":"University of Colorado Boulder","host_organization_lineage":["https://openalex.org/I188538660"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Undergraduate Honors Thesis"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2292570237.pdf","grobid_xml":"https://content.openalex.org/works/W2292570237.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W20123905","https://openalex.org/W1612553237","https://openalex.org/W1978529807","https://openalex.org/W1979208302","https://openalex.org/W1980410097","https://openalex.org/W1990369898","https://openalex.org/W2005510346","https://openalex.org/W2007930861","https://openalex.org/W2019347292","https://openalex.org/W2020138353","https://openalex.org/W2035019346","https://openalex.org/W2036571617","https://openalex.org/W2037747289","https://openalex.org/W2039645377","https://openalex.org/W2044410490","https://openalex.org/W2063406653","https://openalex.org/W2077697455","https://openalex.org/W2082875729","https://openalex.org/W2085992538","https://openalex.org/W2109887615","https://openalex.org/W2116609429","https://openalex.org/W2123281294","https://openalex.org/W2164151366","https://openalex.org/W2164530723","https://openalex.org/W2318791227"],"related_works":["https://openalex.org/W2565283783","https://openalex.org/W2057850916","https://openalex.org/W7080150511","https://openalex.org/W2162078089","https://openalex.org/W4206687287","https://openalex.org/W2920795461","https://openalex.org/W2071817064","https://openalex.org/W6992542761","https://openalex.org/W1503092760","https://openalex.org/W4247681414"],"abstract_inverted_index":{"A":[0],"group":[1],"of":[2,12,31,44,78,86,99,143,160,174,184,202],"RNAs,":[3],"referred":[4],"to":[5,95,103],"as":[6],"Pdases,":[7],"which":[8,27],"mediate":[9],"the":[10,42,69,79,84,97,107,114,144,178,182,185,197,200,208],"formation":[11],"palladium":[13],"nanoparticles":[14],"was":[15],"discovered":[16],"through":[17],"a":[18,49],"SELEX":[19],"process.":[20],"The":[21,128,147,163],"Pdases":[22,102,115,129],"contain":[23],"5-(4-pyridylmethyl)-uracil":[24],"residues":[25,138],"without":[26],"they":[28,66],"are":[29,63,120,139,166],"incapable":[30],"mediating":[32],"nanoparticle":[33],"formation.":[34],"From":[35,106],"previous":[36],"studies,":[37],"it":[38,57,110],"is":[39,58,111],"clear":[40],"that":[41,113,119,177],"structures":[43,62,98,118],"these":[45],"RNA":[46,70],"molecules":[47],"play":[48],"role":[50],"in":[51,141,149,172],"substrate":[52],"and":[53,64,72,75,91,152,194],"product":[54],"specificity,":[55],"but":[56],"unknown":[59],"what":[60],"those":[61],"how":[65],"vary":[67],"between":[68,73],"aptamers":[71],"modified":[74,145,151],"unmodified":[76,136,153],"versions":[77],"RNA.":[80,186],"This":[81],"thesis":[82],"employs":[83],"techniques":[85],"thermal":[87],"melting,":[88],"circular":[89,156],"dichroism,":[90],"RNase":[92],"structure":[93,183,188],"mapping":[94,189],"compare":[96],"five":[100],"selected":[101],"each":[104,170],"other.":[105],"melting":[108,133],"experiments,":[109],"evident":[112],"have":[116,131,191],"variable":[117],"not":[121],"formed":[122],"exclusively":[123],"from":[124,169],"Watson":[125],"Crick":[126],"interactions.":[127],"also":[130],"different":[132,168],"profiles":[134],"if":[135],"uracil":[137],"used":[140],"place":[142],"bases.":[146],"sequences,":[148],"both":[150],"form,":[154],"produce":[155],"dichroism":[157],"spectra":[158],"characteristic":[159],"A-form":[161],"helices.":[162],"spectra,":[164],"however,":[165],"very":[167],"other":[171],"terms":[173],"amplitude":[175],"suggesting":[176],"base":[179],"modifications":[180],"affect":[181],"Finally,":[187],"controls":[190],"been":[192],"completed":[193],"moving":[195],"forward,":[196],"technique":[198],"has":[199],"capability":[201],"providing":[203],"more":[204],"structural":[205],"detail":[206],"for":[207],"Pdases.":[209]},"counts_by_year":[],"updated_date":"2026-09-02T18:50:13.731487","created_date":"2016-06-24T00:00:00"}
