{"id":"https://openalex.org/W2291338166","doi":"https://doi.org/10.1186/s12864-016-2433-8","title":"Complete genome of Staphylococcus aureus Tager 104 provides evidence of its relation to modern systemic hospital-acquired strains","display_name":"Complete genome of Staphylococcus aureus Tager 104 provides evidence of its relation to modern systemic hospital-acquired strains","publication_year":2016,"publication_date":"2016-03-03","ids":{"openalex":"https://openalex.org/W2291338166","doi":"https://doi.org/10.1186/s12864-016-2433-8","mag":"2291338166","pmid":"https://pubmed.ncbi.nlm.nih.gov/26940863","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4778325"},"language":"en","primary_location":{"id":"doi:10.1186/s12864-016-2433-8","doi":"https://doi.org/10.1186/s12864-016-2433-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-016-2433-8","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-016-2433-8","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-016-2433-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Richard W. Davis","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard W. Davis","raw_affiliation_strings":["Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA. davisri@auburn.edu","Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA. davisri@auburn.edu","institution_ids":["https://openalex.org/I82497590"]},{"raw_affiliation_string":"Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA","institution_ids":["https://openalex.org/I82497590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059027075","display_name":"Andrew D. Brannen","orcid":"https://orcid.org/0000-0002-1318-2304","observed_orcids":["https://orcid.org/0000-0002-1318-2304"]},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew D. Brannen","raw_affiliation_strings":["Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA. adb0009@auburn.edu","Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA. adb0009@auburn.edu","institution_ids":["https://openalex.org/I82497590"]},{"raw_affiliation_string":"Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA","institution_ids":["https://openalex.org/I82497590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016821111","display_name":"Jahangir Hossain","orcid":"https://orcid.org/0000-0002-6220-5808","observed_orcids":["https://orcid.org/0000-0002-6220-5808"]},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad J. Hossain","raw_affiliation_strings":["Department of Biological Sciences, Auburn University, 101 Rouse Life Science Building, Auburn, AL, 36849, USA. mjh0007@auburn.edu","Department of Biological Sciences, Auburn University, 101 Rouse Life Science Building, Auburn, AL, 36849, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Auburn University, 101 Rouse Life Science Building, Auburn, AL, 36849, USA. mjh0007@auburn.edu","institution_ids":["https://openalex.org/I82497590"]},{"raw_affiliation_string":"Department of Biological Sciences, Auburn University, 101 Rouse Life Science Building, Auburn, AL, 36849, USA","institution_ids":["https://openalex.org/I82497590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002325378","display_name":"Scott A. Monsma","orcid":"https://orcid.org/0000-0002-1073-6287","observed_orcids":["https://orcid.org/0000-0002-1073-6287"]},"institutions":[{"id":"https://openalex.org/I4210126362","display_name":"Lucigen Corporation","ror":"https://ror.org/031b7yx83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210126362"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott Monsma","raw_affiliation_strings":["Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA. smonsma@lucigen.com","Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA. smonsma@lucigen.com","institution_ids":["https://openalex.org/I4210126362"]},{"raw_affiliation_string":"Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA","institution_ids":["https://openalex.org/I4210126362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046718241","display_name":"PAUL E. BOCK","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul E. Bock","raw_affiliation_strings":["Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA. paul.bock@vanderbilt.edu","Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA. paul.bock@vanderbilt.edu","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078805078","display_name":"Matthias Nahrendorf","orcid":"https://orcid.org/0000-0002-4021-1887","observed_orcids":["https://orcid.org/0000-0002-4021-1887"]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthias Nahrendorf","raw_affiliation_strings":["Center for Systems Biology, Massachusetts General Hospital and Harvard Medical School, Simches Research Building, 185 Cambridge St., Boston, MA, 02114, USA. mnahrendorf@mgh.harvard.edu","Center for Systems Biology, Massachusetts General Hospital and Harvard Medical School, Simches Research Building, 185 Cambridge St., Boston, MA, 02114, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Systems Biology, Massachusetts General Hospital and Harvard Medical School, Simches Research Building, 185 Cambridge St., Boston, MA, 02114, USA. mnahrendorf@mgh.harvard.edu","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419"]},{"raw_affiliation_string":"Center for Systems Biology, Massachusetts General Hospital and Harvard Medical School, Simches Research Building, 185 Cambridge St., Boston, MA, 02114, USA","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032697364","display_name":"David A. Mead","orcid":"https://orcid.org/0000-0003-1982-9356","observed_orcids":["https://orcid.org/0000-0003-1982-9356"]},"institutions":[{"id":"https://openalex.org/I4210126362","display_name":"Lucigen Corporation","ror":"https://ror.org/031b7yx83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210126362"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Mead","raw_affiliation_strings":["Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA. dmead@lucigen.com","Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA. dmead@lucigen.com","institution_ids":["https://openalex.org/I4210126362"]},{"raw_affiliation_string":"Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA","institution_ids":["https://openalex.org/I4210126362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113662616","display_name":"Michael J. Lodes","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210126362","display_name":"Lucigen Corporation","ror":"https://ror.org/031b7yx83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210126362"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Lodes","raw_affiliation_strings":["Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA. mlodes@lucigen.com","Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA. mlodes@lucigen.com","institution_ids":["https://openalex.org/I4210126362"]},{"raw_affiliation_string":"Lucigen Corporation, 2905 Parmenter St, Middleton, WI, 53562, USA","institution_ids":["https://openalex.org/I4210126362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055569461","display_name":"Mark R. Liles","orcid":"https://orcid.org/0000-0002-9313-8150","observed_orcids":["https://orcid.org/0000-0002-9313-8150"]},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark R. Liles","raw_affiliation_strings":["Department of Biological Sciences, Auburn University, 101 Rouse Life Science Building, Auburn, AL, 36849, USA. lilesma@auburn.edu","Department of Biological Sciences, Auburn University, 101 Rouse Life Science Building, Auburn, AL, 36849, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Auburn University, 101 Rouse Life Science Building, Auburn, AL, 36849, USA. lilesma@auburn.edu","institution_ids":["https://openalex.org/I82497590"]},{"raw_affiliation_string":"Department of Biological Sciences, Auburn University, 101 Rouse Life Science Building, Auburn, AL, 36849, USA","institution_ids":["https://openalex.org/I82497590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077074906","display_name":"Peter R. Panizzi","orcid":"https://orcid.org/0000-0003-0141-8807","observed_orcids":["https://orcid.org/0000-0003-0141-8807"]},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Peter Panizzi","raw_affiliation_strings":["Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA. panizzi@auburn.edu","Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA"],"raw_orcid":"https://orcid.org/0000-0003-0141-8807","affiliations":[{"raw_affiliation_string":"Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA. panizzi@auburn.edu","institution_ids":["https://openalex.org/I82497590"]},{"raw_affiliation_string":"Department of Drug Discovery and Development, Harrison School of Pharmacy, Auburn University, 4306 Walker Building, Auburn, AL, 36849, USA","institution_ids":["https://openalex.org/I82497590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5077074906"],"corresponding_institution_ids":["https://openalex.org/I82497590"],"apc_list":{"value":3090,"currency":"USD","value_usd":3090},"apc_paid":{"value":3090,"currency":"USD","value_usd":3090},"fwci":0.4667,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.6261577,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":95},"biblio":{"volume":"17","issue":"1","first_page":"179","last_page":"179"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10195","display_name":"Antimicrobial Resistance in Staphylococcus","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10195","display_name":"Antimicrobial Resistance in Staphylococcus","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11153","display_name":"Streptococcal Infections and Treatments","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/complete-genome-sequence","display_name":"complete genome sequence","score":0.7549999952316284},{"id":"https://openalex.org/keywords/mobile-genetic-elements","display_name":"mobile genetic elements","score":0.9110000133514404},{"id":"https://openalex.org/keywords/virulence-factors","display_name":"virulence factors","score":0.5830000042915344},{"id":"https://openalex.org/keywords/nosocomial-infections","display_name":"nosocomial infections","score":0.7250000238418579},{"id":"https://openalex.org/keywords/reference-strains","display_name":"reference strains","score":0.5839999914169312},{"id":"https://openalex.org/keywords/genome-assembly","display_name":"genome assembly","score":0.48399999737739563},{"id":"https://openalex.org/keywords/bloodstream-infection","display_name":"bloodstream infection","score":0.6620000004768372},{"id":"https://openalex.org/keywords/impetigo","display_name":"impetigo","score":0.7440000176429749},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphisms","display_name":"single nucleotide polymorphisms","score":0.7820000052452087}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6742268800735474},{"id":"https://openalex.org/C2779489039","wikidata":"https://www.wikidata.org/wiki/Q188121","display_name":"Staphylococcus aureus","level":3,"score":0.5859121084213257},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5160896182060242},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.4172786772251129},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4132269322872162},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32154759764671326},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30678659677505493},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19352635741233826},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.15001055598258972},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003428","descriptor_name":"Cross Infection","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008826","descriptor_name":"Microbial Sensitivity Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013203","descriptor_name":"Staphylococcal Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D015373","descriptor_name":"Bacterial Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058885","descriptor_name":"Multilocus Sequence Typing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12864-016-2433-8","doi":"https://doi.org/10.1186/s12864-016-2433-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-016-2433-8","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-016-2433-8","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},{"id":"pmid:26940863","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26940863","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC genomics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4778325","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC4778325/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"Text"},{"id":"pmh:oai:dash.harvard.edu:1/26318491","doi":null,"is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:26318491","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/s12864-016-2433-8","doi":"https://doi.org/10.1186/s12864-016-2433-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-016-2433-8","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-016-2433-8","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.9391000270843506,"display_name":"Good health and well-being"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G2170862767","display_name":"Pathogen specific imaging of endocarditis","funder_award_id":"R01HL114477","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G2405250251","display_name":"Pathobiology of Staphyloccocus areus Endocarditis","funder_award_id":"R00HL094533","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G2557332049","display_name":"Random Shear Shuttle BAC Libraries for Antimicrobial Discovery from Soil Metageno","funder_award_id":"R44AI085840","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G8045553244","display_name":"Mechanism of Staphylocoagulase-activated Blood Clotting","funder_award_id":"R01HL071544","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2291338166.pdf","grobid_xml":"https://content.openalex.org/works/W2291338166.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1480654574","https://openalex.org/W1618868284","https://openalex.org/W1625034136","https://openalex.org/W1752530773","https://openalex.org/W1893769864","https://openalex.org/W1968252650","https://openalex.org/W1983403167","https://openalex.org/W1984010753","https://openalex.org/W1987892693","https://openalex.org/W1989217541","https://openalex.org/W2004548026","https://openalex.org/W2008543742","https://openalex.org/W2029607174","https://openalex.org/W2041257508","https://openalex.org/W2050783903","https://openalex.org/W2054287694","https://openalex.org/W2059239475","https://openalex.org/W2063756105","https://openalex.org/W2075172412","https://openalex.org/W2088810393","https://openalex.org/W2091030812","https://openalex.org/W2092471071","https://openalex.org/W2103350224","https://openalex.org/W2104526064","https://openalex.org/W2107214415","https://openalex.org/W2107282968","https://openalex.org/W2111662072","https://openalex.org/W2112013899","https://openalex.org/W2115127793","https://openalex.org/W2116279310","https://openalex.org/W2122710851","https://openalex.org/W2126915534","https://openalex.org/W2133137630","https://openalex.org/W2140903449","https://openalex.org/W2142428670","https://openalex.org/W2144041499","https://openalex.org/W2149652290","https://openalex.org/W2157572113","https://openalex.org/W2157888653","https://openalex.org/W2158033863","https://openalex.org/W2164640892","https://openalex.org/W2165795500","https://openalex.org/W2168506529","https://openalex.org/W2170367123","https://openalex.org/W2194035228","https://openalex.org/W2249001544","https://openalex.org/W4240578126","https://openalex.org/W4245663047","https://openalex.org/W4253603614","https://openalex.org/W7071111835"],"related_works":["https://openalex.org/W6902339397","https://openalex.org/W7136463674","https://openalex.org/W2112013899","https://openalex.org/W2902129350","https://openalex.org/W7124290454","https://openalex.org/W2113651812","https://openalex.org/W7203705537","https://openalex.org/W7028501075","https://openalex.org/W7143375147","https://openalex.org/W4414753408"],"abstract_inverted_index":{"BACKGROUND:":[0],"Staphylococcus":[1],"aureus":[2,66,87,112,207],"(S.":[3],"aureus)":[4],"infections":[5],"range":[6],"in":[7,79,92],"severity":[8],"due":[9],"to":[10,52,104,133],"expression":[11],"of":[12,25,35,45,110,141,159,163,172,188,202,216,229],"certain":[13,217],"virulence":[14],"factors":[15],"encoded":[16],"on":[17],"mobile":[18],"genetic":[19],"elements":[20],"(MGE).":[21],"As":[22],"such,":[23],"characterization":[24],"these":[26,46],"MGE,":[27,193,230],"as":[28,30,117,235],"well":[29],"single":[31],"nucleotide":[32],"polymorphisms,":[33],"is":[34,50,64,200],"high":[36],"clinical":[37],"and":[38,95,106,149,181,194,226],"microbiological":[39],"importance.":[40],"To":[41],"understand":[42],"the":[43,93,108,164,169],"evolution":[44],"dangerous":[47],"pathogens,":[48],"it":[49],"paramount":[51],"define":[53],"reference":[54,238],"strains":[55],"that":[56,85,128,199],"may":[57],"predate":[58],"MGE":[59],"acquisition.":[60],"One":[61],"such":[62],"candidate":[63],"S.":[65,86,111,206],"Tager":[67,88,115,165,189,210,231],"104,":[68],"a":[69,75,102,118,195,236],"previously":[70],"uncharacterized":[71],"strain":[72],"isolated":[73],"from":[74,143],"patient":[76],"with":[77,183,221],"impetigo":[78],"1947.":[80],"RESULTS:":[81],"We":[82,99],"show":[83],"here":[84],"104":[89,116,166,190,211,232],"can":[90,233],"survive":[91],"bloodstream":[94],"infect":[96],"na\u00efve":[97],"organs.":[98],"also":[100],"demonstrate":[101],"procedure":[103],"construct":[105],"validate":[107],"assembly":[109],"genomes,":[113],"using":[114],"proof-of-concept.":[119],"In":[120],"so":[121],"doing,":[122],"we":[123,155],"bridged":[124],"confounding":[125],"gap":[126],"regions":[127],"limited":[129,192,227],"our":[130,160],"initial":[131],"attempts":[132],"close":[134],"this":[135],"2.82":[136],"Mb":[137],"genome,":[138],"through":[139],"integration":[140],"data":[142],"Illumina":[144],"Nextera":[145],"paired-end,":[146],"PacBio":[147],"RS,":[148],"Lucigen":[150,173],"NxSeq":[151,174],"mate-pair":[152],"libraries.":[153],"Furthermore,":[154],"provide":[156],"independent":[157],"confirmation":[158],"segmental":[161],"arrangement":[162],"genome":[167,242],"by":[168,177],"sole":[170],"use":[171],"libraries":[175],"filled":[176],"paired-end":[178],"MiSeq":[179],"reads":[180],"alignment":[182],"SPAdes":[184],"software.":[185],"Genomic":[186],"analysis":[187],"revealed":[191],"\u03bdSa\u03b2":[196],"island":[197],"configuration":[198],"reminiscent":[201],"other":[203],"hospital":[204],"acquired":[205],"genomes.":[208],"CONCLUSIONS:":[209],"represents":[212],"an":[213],"early-branching":[214],"ancestor":[215],"hospital-acquired":[218],"strains.":[219],"Combined":[220],"its":[222],"earlier":[223],"isolation":[224],"date":[225],"content":[228],"serve":[234],"viable":[237],"for":[239],"future":[240],"comparative":[241],"studies.":[243]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-11-13T13:42:25.865203","created_date":"2016-06-24T00:00:00"}
