{"id":"https://openalex.org/W2228801405","doi":null,"title":"A Novel Statistical Potential for Protein beta-Sheets Prediction","display_name":"A Novel Statistical Potential for Protein beta-Sheets Prediction","publication_year":2014,"publication_date":"2014-04-25","ids":{"openalex":"https://openalex.org/W2228801405","mag":"2228801405"},"language":"en","primary_location":{"id":"pmh:oai:scholarship.rice.edu:1911/77586","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/1911/77586","pdf_url":"http://hdl.handle.net/1911/77586","source":{"id":"https://openalex.org/S4306401268","display_name":"Rice Research Repository (Rice University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I74775410","host_organization_name":"Rice University","host_organization_lineage":["https://openalex.org/I74775410"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/1911/77586","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020122325","display_name":"Linglin Yu","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Linglin Yu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5020122325"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/statistical-potentials","display_name":"statistical potentials","score":0.949999988079071},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"protein structure prediction","score":0.8510000109672546},{"id":"https://openalex.org/keywords/sequence-based-structure-prediction","display_name":"sequence-based structure prediction","score":0.75},{"id":"https://openalex.org/keywords/hydrogen-bonding","display_name":"hydrogen bonding","score":0.7120000123977661},{"id":"https://openalex.org/keywords/lattice-model","display_name":"lattice model","score":0.7300000190734863}],"concepts":[{"id":"https://openalex.org/C2776174256","wikidata":"https://www.wikidata.org/wiki/Q830842","display_name":"BETA (programming language)","level":2,"score":0.5319650173187256},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3139221668243408},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:scholarship.rice.edu:1911/77586","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/1911/77586","pdf_url":"http://hdl.handle.net/1911/77586","source":{"id":"https://openalex.org/S4306401268","display_name":"Rice Research Repository (Rice University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I74775410","host_organization_name":"Rice University","host_organization_lineage":["https://openalex.org/I74775410"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},{"id":"pmh:oai:repository.rice.edu:1911/77586","doi":null,"is_oa":false,"landing_page_url":"https://hdl.handle.net/1911/77586">https://hdl.handle.net/1911/77586</a>.","pdf_url":null,"source":{"id":"https://openalex.org/S4306401268","display_name":"Rice Research Repository (Rice University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I74775410","host_organization_name":"Rice University","host_organization_lineage":["https://openalex.org/I74775410"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Thesis"},{"id":"mag:2228801405","doi":null,"is_oa":false,"landing_page_url":"https://scholarship.rice.edu/handle/1911/77586?show=full","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:scholarship.rice.edu:1911/77586","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/1911/77586","pdf_url":"http://hdl.handle.net/1911/77586","source":{"id":"https://openalex.org/S4306401268","display_name":"Rice Research Repository (Rice University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I74775410","host_organization_name":"Rice University","host_organization_lineage":["https://openalex.org/I74775410"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310133","display_name":"Rice University","ror":"https://ror.org/008zs3103"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2228801405.pdf","grobid_xml":"https://content.openalex.org/works/W2228801405.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1491063910","https://openalex.org/W1589812083","https://openalex.org/W1965615878","https://openalex.org/W1974885083","https://openalex.org/W1995431912","https://openalex.org/W1999613945","https://openalex.org/W2005696873","https://openalex.org/W2008708467","https://openalex.org/W2034859202","https://openalex.org/W2038203159","https://openalex.org/W2042694939","https://openalex.org/W2043197195","https://openalex.org/W2045777307","https://openalex.org/W2060107523","https://openalex.org/W2064226252","https://openalex.org/W2088608587","https://openalex.org/W2091778154","https://openalex.org/W2117451312","https://openalex.org/W2122011799","https://openalex.org/W2125677968","https://openalex.org/W2126103104","https://openalex.org/W2135395577","https://openalex.org/W2137736208","https://openalex.org/W2138976744","https://openalex.org/W2140574901","https://openalex.org/W2142312072","https://openalex.org/W2142694980","https://openalex.org/W2144217620","https://openalex.org/W2153153865","https://openalex.org/W2158800284","https://openalex.org/W2159262772","https://openalex.org/W2161151688","https://openalex.org/W2161962235","https://openalex.org/W2163141523","https://openalex.org/W2165766097","https://openalex.org/W2170882281","https://openalex.org/W2171546617","https://openalex.org/W2188336405","https://openalex.org/W2553893387"],"related_works":["https://openalex.org/W1826312251","https://openalex.org/W2107264799","https://openalex.org/W7095169083","https://openalex.org/W2775424423","https://openalex.org/W2142312072","https://openalex.org/W6980159759","https://openalex.org/W2164583490","https://openalex.org/W2027511257","https://openalex.org/W1966794665","https://openalex.org/W2158800284"],"abstract_inverted_index":{"One":[0],"of":[1,48,95,114,131,170],"the":[2,65,81,88,101,104,109,132,139,155,164,168],"most":[3],"long-term":[4],"challenging":[5],"problems":[6],"in":[7,98,117,159],"biophysics":[8],"studies":[9],"for":[10,175],"both":[11],"computational":[12],"scientists":[13],"and":[14,62,108,173],"experimentalists":[15],"is":[16,22,40,119],"protein":[17,27,33,82],"structure":[18,28,34,42,84,149],"prediction,":[19],"whose":[20],"goal":[21],"to":[23,60,79,127,154,166],"obtain":[24],"three-dimensional":[25],"native":[26,148],"from":[29,151],"one-dimensional":[30],"sequence.":[31],"In":[32,68],"prediction":[35,169],"problems,":[36],"a":[37,73,123,128],"fundamental":[38],"problem":[39],"Beta-sheets":[41,118],"prediction.":[43],"Though":[44],"more":[45],"than":[46],"85%":[47],"experimentally":[49],"solved":[50],"proteins":[51],"contain":[52],"Beta-sheet":[53,83,156],"structures,":[54],"limited":[55],"methods":[56],"have":[57],"been":[58],"found":[59],"rapidly":[61],"accurately":[63],"predict":[64,80],"folded":[66],"conformations.":[67],"this":[69],"study,":[70],"we":[71],"proposed":[72],"novel":[74],"statistical":[75,141],"potential,":[76],"named":[77],"NP-Beta,":[78,99],"only":[85],"based":[86],"on":[87,147],"sequence":[89],"information.":[90],"We":[91,161],"included":[92],"three":[93],"kinds":[94],"potential":[96,124,133,142,165],"terms":[97],"i.e.":[100],"self-packing":[102],"term,":[103],"pair":[105],"interacting":[106],"term":[107],"lattice":[110],"term.":[111],"The":[112],"number":[113],"hydrogen":[115],"bonds":[116],"also":[120],"considered":[121],"as":[122],"component,":[125],"corresponding":[126],"global":[129],"penalty":[130],"function.":[134],"Computational":[135],"tests":[136],"show":[137],"that":[138],"new":[140],"has":[143],"an":[144],"outstanding":[145],"performance":[146],"recognition":[150],"decoys":[152],"comparing":[153],"specific":[157],"potentials":[158],"literature.":[160],"will":[162],"apply":[163],"improve":[167],"Beta-strand":[171],"arrangement":[172],"registration":[174],"beta":[176],"proteins.":[177]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}