{"id":"https://openalex.org/W2186547519","doi":null,"title":"Original article: EST SEQUENCING AND GENE EXPRESSION PROFILING IN SCUTELLARIA BAICALENSIS","display_name":"Original article: EST SEQUENCING AND GENE EXPRESSION PROFILING IN SCUTELLARIA BAICALENSIS","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2186547519","mag":"2186547519"},"language":"en","primary_location":{"id":"pmh:oai:CiteSeerX.psu:10.1.1.810.2770","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.810.2770","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/16/f9/EXCLI-13-392.PMC4464476.pdf","raw_type":"text"},"volume":null,"type":"article","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039328370","display_name":"Nam Il Park","orcid":"https://orcid.org/0000-0001-6725-0758","observed_orcids":["https://orcid.org/0000-0001-6725-0758"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nam Il Park","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6725-0758","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053666010","display_name":"Ik\u2010Young Choi","orcid":"https://orcid.org/0000-0003-4168-0471","observed_orcids":["https://orcid.org/0000-0003-4168-0471"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ik\u2010Young Choi","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-4168-0471","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043607379","display_name":"Beom\u2010Soon Choi","orcid":"https://orcid.org/0000-0002-7653-9761","observed_orcids":["https://orcid.org/0000-0002-7653-9761"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Beom\u2010Soon Choi","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-7653-9761","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014899740","display_name":"Young Seon Kim","orcid":"https://orcid.org/0000-0002-9168-8204","observed_orcids":["https://orcid.org/0000-0002-9168-8204"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Young Seon Kim","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-9168-8204","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5100690113","display_name":"Mi Young Lee","orcid":"https://orcid.org/0000-0002-3308-340X","observed_orcids":["https://orcid.org/0000-0002-3308-340X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mi Young Lee","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scutellaria-baicalensis","display_name":"Scutellaria baicalensis","score":1.0},{"id":"https://openalex.org/keywords/transcriptome","display_name":"transcriptome","score":0.925000011920929},{"id":"https://openalex.org/keywords/de-novo-assembly","display_name":"de novo assembly","score":0.906000018119812},{"id":"https://openalex.org/keywords/early-growth-stage","display_name":"early growth stage","score":0.8790000081062317},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"gene expression profiling","score":0.8309999704360962},{"id":"https://openalex.org/keywords/illumina-sequencing","display_name":"Illumina sequencing","score":0.6669999957084656}],"concepts":[{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.8010928630828857},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6869946122169495},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6122501492500305},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5692740082740784},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.553439736366272},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5157278180122375},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4973469078540802},{"id":"https://openalex.org/C106337198","wikidata":"https://www.wikidata.org/wiki/Q13564012","display_name":"Illumina dye sequencing","level":4,"score":0.47606343030929565},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4737628102302551},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.47136202454566956},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.14234024286270142}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:CiteSeerX.psu:10.1.1.810.2770","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.810.2770","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/16/f9/EXCLI-13-392.PMC4464476.pdf","raw_type":"text"},{"id":"mag:2186547519","doi":null,"is_oa":false,"landing_page_url":"http://www.excli.de/vol13/Park_07042014_proof.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1557680853","https://openalex.org/W1565041208","https://openalex.org/W1965514968","https://openalex.org/W2000479020","https://openalex.org/W2009276427","https://openalex.org/W2014926622","https://openalex.org/W2016310579","https://openalex.org/W2024556021","https://openalex.org/W2031977472","https://openalex.org/W2045429591","https://openalex.org/W2053024398","https://openalex.org/W2061537056","https://openalex.org/W2063471238","https://openalex.org/W2076218410","https://openalex.org/W2080603995","https://openalex.org/W2080782988","https://openalex.org/W2089421781","https://openalex.org/W2097601029","https://openalex.org/W2099555477","https://openalex.org/W2100703845","https://openalex.org/W2123405262","https://openalex.org/W2123864176","https://openalex.org/W2142839444","https://openalex.org/W2149755764","https://openalex.org/W2154431984"],"related_works":["https://openalex.org/W2305979413","https://openalex.org/W2888744098","https://openalex.org/W2138321803","https://openalex.org/W6967317635","https://openalex.org/W2020010077","https://openalex.org/W7100524118","https://openalex.org/W1994453373","https://openalex.org/W3032067979","https://openalex.org/W2764250233","https://openalex.org/W1995120919"],"abstract_inverted_index":{"Scutellaria":[0],"baicalensis":[1],"is":[2,32,96],"an":[3,97],"important":[4],"medicinal":[5],"plant,":[6],"but":[7],"few":[8],"genomic":[9],"resources":[10],"are":[11],"availa-ble":[12],"for":[13,19,100],"this":[14,89],"species,":[15],"as":[16,18,163],"well":[17],"other":[20],"non-model":[21],"plants.":[22],"One":[23],"of":[24,38,51,56,69,121,139,184],"the":[25,35,42,52,111,114,122,180],"major":[26],"new":[27,90],"directions":[28],"in":[29,134],"genome":[30],"research":[31],"to":[33,92],"discover":[34],"full":[36],"spectrum":[37],"genes":[39,176],"transcribed":[40],"from":[41],"whole":[43],"genome.":[44],"Here,":[45],"we":[46,144],"report":[47],"extensive":[48,94],"transcriptome":[49,60,102],"data":[50],"early":[53,181],"growth":[54,182],"stage":[55,183],"S.":[57,185],"baicalensis.":[58],"This":[59],"consensus":[61,141],"sequence":[62],"was":[63],"constructed":[64],"by":[65,165],"de":[66],"novo":[67,119],"assembly":[68,120],"shotgun":[70],"sequenc-ing":[71],"data,":[72],"obtained":[73,105],"using":[74,110],"multiple":[75],"next-generation":[76],"DNA":[77],"sequencing":[78],"(NGS)":[79],"platforms":[80],"(Roche/454":[81],"GS_FLX+":[82],"and":[83,107,113,125,130],"Illumina/Solexa":[84,115],"HiSeq2000).":[85],"We":[86,104],"show":[87],"that":[88],"approach":[91],"obtain":[93],"mRNA":[95,140],"efficient":[98],"strategy":[99],"genome-wide":[101],"analysis.":[103],"1,226,938":[106],"161,417,646":[108],"reads":[109,127],"GS_FLX":[112,124],"HiS-eq2000,":[116],"respectively.":[117],"De":[118],"high-quality":[123],"Illumina":[126],"(95":[128],"%":[129],"75":[131],"%)":[132],"resulted":[133],"more":[135],"than":[136],"82":[137],"Mb":[138],"sequence,":[142],"which":[143],"as-sembled":[145],"into":[146],"51,188":[147],"contigs,":[148,158],"with":[149],"at":[150],"least":[151],"500":[152],"bp":[153],"per":[154],"contig.":[155],"Of":[156,172],"these":[157],"39,581":[159],"con-tained":[160],"known":[161],"genes,":[162],"determined":[164],"BLASTX":[166],"searches":[167],"against":[168],"non-redundant":[169],"NCBI":[170],"data-base.":[171],"these,":[173],"20,498":[174],"different":[175],"were":[177],"expressed":[178],"during":[179],"bai-":[186]},"counts_by_year":[],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2016-06-24T00:00:00"}
