{"id":"https://openalex.org/W2174696350","doi":"https://doi.org/10.2147/aabc.s64482","title":"Parallel computing in genomic research: advances and applications","display_name":"Parallel computing in genomic research: advances and applications","publication_year":2015,"publication_date":"2015-11-01","ids":{"openalex":"https://openalex.org/W2174696350","doi":"https://doi.org/10.2147/aabc.s64482","mag":"2174696350","pmid":"https://pubmed.ncbi.nlm.nih.gov/26604801"},"language":"en","primary_location":{"id":"doi:10.2147/aabc.s64482","doi":"https://doi.org/10.2147/aabc.s64482","is_oa":true,"landing_page_url":"https://doi.org/10.2147/aabc.s64482","pdf_url":"https://www.dovepress.com/getfile.php?fileID=28004","source":{"id":"https://openalex.org/S4210184819","display_name":"Advances and Applications in Bioinformatics and Chemistry","issn_l":"1178-6949","issn":["1178-6949"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","doyens","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320348","host_organization_name":"Dove Medical Press","host_organization_lineage":["https://openalex.org/P4310320348","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Dove Medical Press","Taylor & Francis"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances and Applications in Bioinformatics and Chemistry","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.dovepress.com/getfile.php?fileID=28004","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050455034","display_name":"Daniel de Oliveira","orcid":"https://orcid.org/0000-0001-9346-7651","observed_orcids":["https://orcid.org/0000-0001-9346-7651"]},"institutions":[{"id":"https://openalex.org/I161127581","display_name":"Universidade Federal Fluminense","ror":"https://ror.org/02rjhbb08","country_code":"BR","type":"education","lineage":["https://openalex.org/I161127581"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Daniel de Oliveira","raw_affiliation_strings":["Institute of Computing, Fluminense Federal University, Niter\u00f3i, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing, Fluminense Federal University, Niter\u00f3i, Brazil","institution_ids":["https://openalex.org/I161127581"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042169127","display_name":"Kary Oca\u00f1a","orcid":"https://orcid.org/0000-0002-2151-7418","observed_orcids":["https://orcid.org/0000-0002-2151-7418"]},"institutions":[{"id":"https://openalex.org/I4210142352","display_name":"Laborat\u00f3rio Nacional de Computa\u00e7\u00e3o Cient\u00edfica","ror":"https://ror.org/0498ekt05","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210142352"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Kary Oca\u00f1a","raw_affiliation_strings":["National Laboratory of Scientific Computing, Petr\u00f3polis, Rio de Janeiro, Brazil","National Laboratory of Scientific Computing, Petr\u00f3polis, Rio de Janeiro,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Laboratory of Scientific Computing, Petr\u00f3polis, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I4210142352"]},{"raw_affiliation_string":"National Laboratory of Scientific Computing, Petr\u00f3polis, Rio de Janeiro,","institution_ids":["https://openalex.org/I4210142352"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2320,"currency":"USD","value_usd":2320},"apc_paid":{"value":2320,"currency":"USD","value_usd":2320},"fwci":7.7136,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.96857671,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"8","issue":null,"first_page":"23","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.2939000129699707,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.2939000129699707,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.24379999935626984,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.17479999363422394,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/parallel-computing","display_name":"parallel computing","score":0.996999979019165},{"id":"https://openalex.org/keywords/genomic-data","display_name":"genomic data","score":0.43799999356269836},{"id":"https://openalex.org/keywords/high-performance-computing","display_name":"high-performance computing","score":0.9959999918937683},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"bioinformatics","score":0.8650000095367432},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"cloud computing","score":0.8619999885559082},{"id":"https://openalex.org/keywords/grid-computing","display_name":"grid computing","score":0.9819999933242798},{"id":"https://openalex.org/keywords/cluster-computing","display_name":"cluster computing","score":0.8460000157356262},{"id":"https://openalex.org/keywords/gpu-computing","display_name":"GPU computing","score":0.8999999761581421},{"id":"https://openalex.org/keywords/genomic-data-processing","display_name":"genomic data processing","score":0.5849999785423279}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7984393835067749},{"id":"https://openalex.org/C13600138","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Petabyte","level":3,"score":0.7065690159797668},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6551507711410522},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.6310100555419922},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5747896432876587},{"id":"https://openalex.org/C67953723","wikidata":"https://www.wikidata.org/wiki/Q192525","display_name":"Workstation","level":2,"score":0.5704383850097656},{"id":"https://openalex.org/C199683683","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Terabyte","level":2,"score":0.5640487670898438},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5536704659461975},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.5376653671264648},{"id":"https://openalex.org/C2781172179","wikidata":"https://www.wikidata.org/wiki/Q853109","display_name":"Parallelism (grammar)","level":2,"score":0.5004630088806152},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5001392364501953},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.49912428855895996},{"id":"https://openalex.org/C106515295","wikidata":"https://www.wikidata.org/wiki/Q26806595","display_name":"Parallel processing","level":2,"score":0.48481646180152893},{"id":"https://openalex.org/C2779851693","wikidata":"https://www.wikidata.org/wiki/Q183484","display_name":"Graphics processing unit","level":2,"score":0.4681829512119293},{"id":"https://openalex.org/C76831024","wikidata":"https://www.wikidata.org/wiki/Q5227096","display_name":"Data-intensive computing","level":4,"score":0.459168016910553},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.4585208296775818},{"id":"https://openalex.org/C29140674","wikidata":"https://www.wikidata.org/wiki/Q206637","display_name":"Computer cluster","level":2,"score":0.444191575050354},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.398883581161499},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.38254255056381226},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.35230928659439087},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.18713471293449402},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1506902575492859},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.2147/aabc.s64482","doi":"https://doi.org/10.2147/aabc.s64482","is_oa":true,"landing_page_url":"https://doi.org/10.2147/aabc.s64482","pdf_url":"https://www.dovepress.com/getfile.php?fileID=28004","source":{"id":"https://openalex.org/S4210184819","display_name":"Advances and Applications in Bioinformatics and Chemistry","issn_l":"1178-6949","issn":["1178-6949"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","doyens","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320348","host_organization_name":"Dove Medical Press","host_organization_lineage":["https://openalex.org/P4310320348","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Dove Medical Press","Taylor & Francis"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances and Applications in Bioinformatics and Chemistry","raw_type":"journal-article"},{"id":"pmid:26604801","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26604801","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances and applications in bioinformatics and chemistry : AABC","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4655901","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4655901","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Adv Appl Bioinform Chem","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:00b171e45f7c49c291f29232092c0d99","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/00b171e45f7c49c291f29232092c0d99","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Advances and Applications in Bioinformatics and Chemistry, Vol 2015, Iss default, Pp 23-35 (2015)","raw_type":"article"},{"id":"pmh:oai:dovepress.com/24608","doi":null,"is_oa":true,"landing_page_url":"https://www.dovepress.com/parallel-computing-in-genomic-research-advances-and-applications-peer-reviewed-article-AABC","pdf_url":null,"source":{"id":"https://openalex.org/S4306401012","display_name":"Dove Medical Press (Taylor and Francis Group)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Review"}],"best_oa_location":{"id":"doi:10.2147/aabc.s64482","doi":"https://doi.org/10.2147/aabc.s64482","is_oa":true,"landing_page_url":"https://doi.org/10.2147/aabc.s64482","pdf_url":"https://www.dovepress.com/getfile.php?fileID=28004","source":{"id":"https://openalex.org/S4210184819","display_name":"Advances and Applications in Bioinformatics and Chemistry","issn_l":"1178-6949","issn":["1178-6949"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","doyens","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320348","host_organization_name":"Dove Medical Press","host_organization_lineage":["https://openalex.org/P4310320348","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Dove Medical Press","Taylor & Francis"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances and Applications in Bioinformatics and Chemistry","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[{"id":"https://openalex.org/study-designs/systematic-review","display_name":"Systematic Review"}],"awards":[{"id":"https://openalex.org/G1840770272","display_name":null,"funder_award_id":"E-26/","funder_id":"https://openalex.org/F4320322749","funder_display_name":"Funda\u00e7\u00e3o Carlos Chagas Filho de Amparo \u00e0 Pesquisa do Estado do Rio de Janeiro"},{"id":"https://openalex.org/G187588942","display_name":null,"funder_award_id":"E-26/111","funder_id":"https://openalex.org/F4320322749","funder_display_name":"Funda\u00e7\u00e3o Carlos Chagas Filho de Amparo \u00e0 Pesquisa do Estado do Rio de Janeiro"},{"id":"https://openalex.org/G3203392005","display_name":null,"funder_award_id":"2013-3","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"}],"funders":[{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322749","display_name":"Funda\u00e7\u00e3o Carlos Chagas Filho de Amparo \u00e0 Pesquisa do Estado do Rio de Janeiro","ror":"https://ror.org/03kk0s825"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2174696350.pdf","grobid_xml":"https://content.openalex.org/works/W2174696350.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W74053542","https://openalex.org/W147373330","https://openalex.org/W1552506623","https://openalex.org/W1597108197","https://openalex.org/W1957583170","https://openalex.org/W1971514365","https://openalex.org/W1973094248","https://openalex.org/W1976468481","https://openalex.org/W1977109114","https://openalex.org/W1982455101","https://openalex.org/W1991462891","https://openalex.org/W2006017338","https://openalex.org/W2011544632","https://openalex.org/W2017614184","https://openalex.org/W2017952818","https://openalex.org/W2028817191","https://openalex.org/W2038733937","https://openalex.org/W2040513965","https://openalex.org/W2060594888","https://openalex.org/W2064050001","https://openalex.org/W2076432916","https://openalex.org/W2081930221","https://openalex.org/W2084734290","https://openalex.org/W2095057899","https://openalex.org/W2096120508","https://openalex.org/W2096128336","https://openalex.org/W2096538323","https://openalex.org/W2097288488","https://openalex.org/W2099802454","https://openalex.org/W2112419798","https://openalex.org/W2114296561","https://openalex.org/W2117495487","https://openalex.org/W2122425433","https://openalex.org/W2123134606","https://openalex.org/W2125119899","https://openalex.org/W2138193360","https://openalex.org/W2151184753","https://openalex.org/W2154513453","https://openalex.org/W2155523802","https://openalex.org/W2160363604","https://openalex.org/W2168082814","https://openalex.org/W2169328938","https://openalex.org/W2170421047","https://openalex.org/W2170587743","https://openalex.org/W2173213060","https://openalex.org/W2293540551","https://openalex.org/W2540399434","https://openalex.org/W4210484678","https://openalex.org/W4242169979","https://openalex.org/W4242481248","https://openalex.org/W4248758183","https://openalex.org/W4392909747","https://openalex.org/W6684709955"],"related_works":["https://openalex.org/W1538652242","https://openalex.org/W2011521129","https://openalex.org/W4379164835","https://openalex.org/W2461968736","https://openalex.org/W4386544342","https://openalex.org/W612951489","https://openalex.org/W2185866686","https://openalex.org/W2931267163","https://openalex.org/W1977658424","https://openalex.org/W2520913399"],"abstract_inverted_index":{"Today's":[0],"genomic":[1,109,157],"experiments":[2,70,110,158],"have":[3,99],"to":[4,57,88,103,140,159],"process":[5,22],"the":[6,15,52,59,84,127,142],"so-called":[7],"\"biological":[8],"big":[9],"data\"":[10],"that":[11,125,148],"is":[12,139],"now":[13],"reaching":[14],"size":[16],"of":[17,26,64,123],"Terabytes":[18],"and":[19,42,56,62,79,92,95,114,134,146,164],"Petabytes.":[20],"To":[21],"this":[23,65],"huge":[24],"amount":[25],"data,":[27],"scientists":[28,87,105,153],"may":[29],"require":[30],"weeks":[31],"or":[32],"months":[33],"if":[34],"they":[35],"use":[36],"their":[37,108,156],"own":[38],"workstations.":[39],"Parallelism":[40],"techniques":[41,94,163],"high-performance":[43],"computing":[44],"(HPC)":[45],"environments":[46,73],"can":[47,149],"be":[48,150],"applied":[49],"for":[50,106],"reducing":[51],"total":[53],"processing":[54,81,107],"time":[55],"ease":[58],"management,":[60],"treatment,":[61],"analyses":[63],"data.":[66],"However,":[67],"running":[68,155],"bioinformatics":[69],"in":[71],"HPC":[72,112,165],"such":[74],"as":[75],"clouds,":[76],"grids,":[77],"clusters,":[78],"graphics":[80],"unit":[82],"requires":[83],"expertise":[85],"from":[86,161],"integrate":[89],"computational,":[90],"biological,":[91],"mathematical":[93],"technologies.":[96],"Several":[97],"solutions":[98],"already":[100],"been":[101],"proposed":[102],"allow":[104],"using":[111],"capabilities":[113],"parallelism":[115,162],"techniques.":[116],"This":[117],"article":[118],"brings":[119],"a":[120],"systematic":[121],"review":[122],"literature":[124],"surveys":[126],"most":[128],"recently":[129],"published":[130],"research":[131],"involving":[132],"genomics":[133],"parallel":[135],"computing.":[136],"Our":[137],"objective":[138],"gather":[141],"main":[143],"characteristics,":[144],"benefits,":[145],"challenges":[147],"considered":[151],"by":[152],"when":[154],"benefit":[160],"capabilities.":[166]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":2}],"updated_date":"2026-10-16T09:59:22.235173","created_date":"2016-06-24T00:00:00"}